data_4QXP
#
_model_server_result.job_id            2j-Vkf5iwcnsIzZ9ZIIq4A 
_model_server_result.datetime_utc      '2024-11-22 06:37:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4QXP 
#
_exptl.entry_id    4QXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.291 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.97 
_cell.angle_gamma         90 
_cell.entry_id            4QXP 
_cell.length_a            36.57 
_cell.length_b            77.919 
_cell.length_c            79.634 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C17 H14 O4' 
_chem_comp.formula_weight    282.291 
_chem_comp.id                1YE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAG CAF 1YE doub 1 n y 
CAG CAP 1YE sing 2 n y 
CAK CAM 1YE sing 3 n n 
CAK CAP 1YE sing 4 n n 
CAF CAI 1YE sing 5 n y 
CAM OAC 1YE doub 6 n n 
CAM OAE 1YE sing 7 n n 
CAP CAU 1YE doub 8 n y 
CAI CAR 1YE doub 9 n y 
CAU CAR 1YE sing 10 n y 
CAU OAL 1YE sing 11 n n 
CAR CAQ 1YE sing 12 n n 
OAL CAT 1YE sing 13 n n 
CAQ OAD 1YE doub 14 n n 
CAQ CAS 1YE sing 15 n n 
CAT CAS 1YE doub 16 n y 
CAT CAO 1YE sing 17 n y 
CAB CAO 1YE sing 18 n n 
CAS CAJ 1YE sing 19 n y 
CAO CAN 1YE doub 20 n y 
CAJ CAH 1YE doub 21 n y 
CAN CAH 1YE sing 22 n y 
CAN CAA 1YE sing 23 n n 
CAJ H1 1YE sing 24 n n 
CAH H2 1YE sing 25 n n 
CAA H3 1YE sing 26 n n 
CAA H4 1YE sing 27 n n 
CAA H5 1YE sing 28 n n 
CAB H6 1YE sing 29 n n 
CAB H7 1YE sing 30 n n 
CAB H8 1YE sing 31 n n 
CAI H9 1YE sing 32 n n 
CAF H10 1YE sing 33 n n 
CAG H11 1YE sing 34 n n 
CAK H12 1YE sing 35 n n 
CAK H13 1YE sing 36 n n 
OAE H14 1YE sing 37 n n 
#
_atom_sites.entry_id                     4QXP 
_atom_sites.fract_transf_matrix[1][1]    0.027345 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004317 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1YE A 1 401 1 1YE DRG . 
D 2 1YE B 1 401 1 1YE DRG . 
E 3 HOH A 1 501 2 HOH HOH . 
E 3 HOH A 2 502 4 HOH HOH . 
E 3 HOH A 3 503 5 HOH HOH . 
E 3 HOH A 4 504 7 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 10 HOH HOH . 
E 3 HOH A 7 507 11 HOH HOH . 
E 3 HOH A 8 508 12 HOH HOH . 
E 3 HOH A 9 509 13 HOH HOH . 
E 3 HOH A 10 510 16 HOH HOH . 
E 3 HOH A 11 511 19 HOH HOH . 
E 3 HOH A 12 512 20 HOH HOH . 
E 3 HOH A 13 513 21 HOH HOH . 
E 3 HOH A 14 514 22 HOH HOH . 
E 3 HOH A 15 515 24 HOH HOH . 
E 3 HOH A 16 516 25 HOH HOH . 
E 3 HOH A 17 517 26 HOH HOH . 
E 3 HOH A 18 518 28 HOH HOH . 
E 3 HOH A 19 519 30 HOH HOH . 
E 3 HOH A 20 520 31 HOH HOH . 
E 3 HOH A 21 521 32 HOH HOH . 
E 3 HOH A 22 522 35 HOH HOH . 
E 3 HOH A 23 523 36 HOH HOH . 
E 3 HOH A 24 524 37 HOH HOH . 
E 3 HOH A 25 525 38 HOH HOH . 
E 3 HOH A 26 526 39 HOH HOH . 
E 3 HOH A 27 527 40 HOH HOH . 
E 3 HOH A 28 528 41 HOH HOH . 
E 3 HOH A 29 529 43 HOH HOH . 
E 3 HOH A 30 530 47 HOH HOH . 
E 3 HOH A 31 531 51 HOH HOH . 
E 3 HOH A 32 532 53 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 3 HOH HOH . 
F 3 HOH B 3 503 6 HOH HOH . 
F 3 HOH B 4 504 9 HOH HOH . 
F 3 HOH B 5 505 14 HOH HOH . 
F 3 HOH B 6 506 17 HOH HOH . 
F 3 HOH B 7 507 23 HOH HOH . 
F 3 HOH B 8 508 33 HOH HOH . 
F 3 HOH B 9 509 34 HOH HOH . 
F 3 HOH B 10 510 42 HOH HOH . 
F 3 HOH B 11 511 44 HOH HOH . 
F 3 HOH B 12 512 45 HOH HOH . 
F 3 HOH B 13 513 46 HOH HOH . 
F 3 HOH B 14 514 48 HOH HOH . 
F 3 HOH B 15 515 49 HOH HOH . 
F 3 HOH B 16 516 50 HOH HOH . 
F 3 HOH B 17 517 52 HOH HOH . 
F 3 HOH B 18 518 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAD 1YE . . . C 2 7.647 -76.692 -62.085 1 44.74 ? OAD 1YE 401 A 1 
HETATM 2 C CAQ 1YE . . . C 2 8.003 -77.711 -61.497 1 55.27 ? CAQ 1YE 401 A 1 
HETATM 3 C CAS 1YE . . . C 2 7.089 -78.705 -61.199 1 51.55 ? CAS 1YE 401 A 1 
HETATM 4 C CAJ 1YE . . . C 2 5.76 -78.535 -61.568 1 51.37 ? CAJ 1YE 401 A 1 
HETATM 5 C CAH 1YE . . . C 2 4.84 -79.541 -61.279 1 56 ? CAH 1YE 401 A 1 
HETATM 6 C CAN 1YE . . . C 2 5.237 -80.711 -60.627 1 46.44 ? CAN 1YE 401 A 1 
HETATM 7 C CAA 1YE . . . C 2 4.3 -81.703 -60.347 1 26.68 ? CAA 1YE 401 A 1 
HETATM 8 C CAO 1YE . . . C 2 6.574 -80.882 -60.258 1 45.72 ? CAO 1YE 401 A 1 
HETATM 9 C CAB 1YE . . . C 2 6.99 -82.043 -59.604 1 30.41 ? CAB 1YE 401 A 1 
HETATM 10 C CAT 1YE . . . C 2 7.483 -79.863 -60.537 1 43.76 ? CAT 1YE 401 A 1 
HETATM 11 O OAL 1YE . . . C 2 8.781 -80.059 -60.194 1 36.28 ? OAL 1YE 401 A 1 
HETATM 12 C CAU 1YE . . . C 2 9.705 -79.109 -60.509 1 47.85 ? CAU 1YE 401 A 1 
HETATM 13 C CAR 1YE . . . C 2 9.328 -77.933 -61.155 1 57.72 ? CAR 1YE 401 A 1 
HETATM 14 C CAI 1YE . . . C 2 10.309 -76.99 -61.463 1 52.34 ? CAI 1YE 401 A 1 
HETATM 15 C CAF 1YE . . . C 2 11.633 -77.232 -61.107 1 41.69 ? CAF 1YE 401 A 1 
HETATM 16 C CAG 1YE . . . C 2 11.999 -78.407 -60.453 1 34.93 ? CAG 1YE 401 A 1 
HETATM 17 C CAP 1YE . . . C 2 11.022 -79.346 -60.145 1 47.31 ? CAP 1YE 401 A 1 
HETATM 18 C CAK 1YE . . . C 2 11.361 -80.525 -59.495 1 48.85 ? CAK 1YE 401 A 1 
HETATM 19 C CAM 1YE . . . C 2 11.257 -81.74 -60.416 1 49.85 ? CAM 1YE 401 A 1 
HETATM 20 O OAE 1YE . . . C 2 11.567 -82.84 -59.898 1 44.52 ? OAE 1YE 401 A 1 
HETATM 21 O OAC 1YE . . . C 2 10.89 -81.531 -61.601 1 37.91 ? OAC 1YE 401 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#