data_4QXP # _model_server_result.job_id CWhUF_HkxLSaIl78dBenkA _model_server_result.datetime_utc '2024-11-22 06:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4QXP # _exptl.entry_id 4QXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.97 _cell.angle_gamma 90 _cell.entry_id 4QXP _cell.length_a 36.57 _cell.length_b 77.919 _cell.length_c 79.634 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4QXP _atom_sites.fract_transf_matrix[1][1] 0.027345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1YE A 1 401 1 1YE DRG . D 2 1YE B 1 401 1 1YE DRG . E 3 HOH A 1 501 2 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 7 HOH HOH . E 3 HOH A 5 505 8 HOH HOH . E 3 HOH A 6 506 10 HOH HOH . E 3 HOH A 7 507 11 HOH HOH . E 3 HOH A 8 508 12 HOH HOH . E 3 HOH A 9 509 13 HOH HOH . E 3 HOH A 10 510 16 HOH HOH . E 3 HOH A 11 511 19 HOH HOH . E 3 HOH A 12 512 20 HOH HOH . E 3 HOH A 13 513 21 HOH HOH . E 3 HOH A 14 514 22 HOH HOH . E 3 HOH A 15 515 24 HOH HOH . E 3 HOH A 16 516 25 HOH HOH . E 3 HOH A 17 517 26 HOH HOH . E 3 HOH A 18 518 28 HOH HOH . E 3 HOH A 19 519 30 HOH HOH . E 3 HOH A 20 520 31 HOH HOH . E 3 HOH A 21 521 32 HOH HOH . E 3 HOH A 22 522 35 HOH HOH . E 3 HOH A 23 523 36 HOH HOH . E 3 HOH A 24 524 37 HOH HOH . E 3 HOH A 25 525 38 HOH HOH . E 3 HOH A 26 526 39 HOH HOH . E 3 HOH A 27 527 40 HOH HOH . E 3 HOH A 28 528 41 HOH HOH . E 3 HOH A 29 529 43 HOH HOH . E 3 HOH A 30 530 47 HOH HOH . E 3 HOH A 31 531 51 HOH HOH . E 3 HOH A 32 532 53 HOH HOH . F 3 HOH B 1 501 1 HOH HOH . F 3 HOH B 2 502 3 HOH HOH . F 3 HOH B 3 503 6 HOH HOH . F 3 HOH B 4 504 9 HOH HOH . F 3 HOH B 5 505 14 HOH HOH . F 3 HOH B 6 506 17 HOH HOH . F 3 HOH B 7 507 23 HOH HOH . F 3 HOH B 8 508 33 HOH HOH . F 3 HOH B 9 509 34 HOH HOH . F 3 HOH B 10 510 42 HOH HOH . F 3 HOH B 11 511 44 HOH HOH . F 3 HOH B 12 512 45 HOH HOH . F 3 HOH B 13 513 46 HOH HOH . F 3 HOH B 14 514 48 HOH HOH . F 3 HOH B 15 515 49 HOH HOH . F 3 HOH B 16 516 50 HOH HOH . F 3 HOH B 17 517 52 HOH HOH . F 3 HOH B 18 518 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . D 2 13.814 -74.811 -57.156 1 41.47 ? OAD 1YE 401 B 1 HETATM 2 C CAQ 1YE . . . D 2 13.45 -75.957 -56.917 1 45.68 ? CAQ 1YE 401 B 1 HETATM 3 C CAS 1YE . . . D 2 14.342 -76.902 -56.447 1 42.75 ? CAS 1YE 401 B 1 HETATM 4 C CAJ 1YE . . . D 2 15.671 -76.55 -56.238 1 42.35 ? CAJ 1YE 401 B 1 HETATM 5 C CAH 1YE . . . D 2 16.562 -77.506 -55.749 1 49.36 ? CAH 1YE 401 B 1 HETATM 6 C CAN 1YE . . . D 2 16.123 -78.806 -55.462 1 48.99 ? CAN 1YE 401 B 1 HETATM 7 C CAA 1YE . . . D 2 17.016 -79.758 -54.97 1 26.42 ? CAA 1YE 401 B 1 HETATM 8 C CAO 1YE . . . D 2 14.786 -79.154 -55.664 1 51.59 ? CAO 1YE 401 B 1 HETATM 9 C CAB 1YE . . . D 2 14.292 -80.436 -55.39 1 28.74 ? CAB 1YE 401 B 1 HETATM 10 C CAT 1YE . . . D 2 13.929 -78.201 -56.179 1 49.39 ? CAT 1YE 401 B 1 HETATM 11 O OAL 1YE . . . D 2 12.621 -78.571 -56.317 1 46.58 ? OAL 1YE 401 B 1 HETATM 12 C CAU 1YE . . . D 2 11.725 -77.635 -56.724 1 40.76 ? CAU 1YE 401 B 1 HETATM 13 C CAR 1YE . . . D 2 12.132 -76.337 -57.038 1 46.46 ? CAR 1YE 401 B 1 HETATM 14 C CAI 1YE . . . D 2 11.168 -75.414 -57.44 1 47.74 ? CAI 1YE 401 B 1 HETATM 15 C CAF 1YE . . . D 2 9.841 -75.826 -57.549 1 48.69 ? CAF 1YE 401 B 1 HETATM 16 C CAG 1YE . . . D 2 9.444 -77.132 -57.259 1 36.91 ? CAG 1YE 401 B 1 HETATM 17 C CAP 1YE . . . D 2 10.407 -78.046 -56.856 1 38.74 ? CAP 1YE 401 B 1 HETATM 18 C CAK 1YE . . . D 2 10.054 -79.341 -56.541 1 42.21 ? CAK 1YE 401 B 1 HETATM 19 C CAM 1YE . . . D 2 10.081 -79.604 -55.033 1 54.65 ? CAM 1YE 401 B 1 HETATM 20 O OAE 1YE . . . D 2 10.594 -78.735 -54.276 1 48.95 ? OAE 1YE 401 B 1 HETATM 21 O OAC 1YE . . . D 2 9.595 -80.706 -54.692 1 41.3 ? OAC 1YE 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #