data_4QXQ # _model_server_result.job_id IvwbnQtX7nUpEGpnOhPKIA _model_server_result.datetime_utc '2024-11-30 07:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4QXQ # _exptl.entry_id 4QXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QXQ _cell.length_a 147.954 _cell.length_b 147.954 _cell.length_c 36.122 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4QXQ _atom_sites.fract_transf_matrix[1][1] 0.006759 _atom_sites.fract_transf_matrix[1][2] 0.003902 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1YE A 1 401 1 1YE DRG . D 3 SO4 A 1 402 1 SO4 SO4 . E 2 1YE B 1 401 2 1YE DRG . F 4 HOH A 1 501 1 HOH HOH . F 4 HOH A 2 502 6 HOH HOH . F 4 HOH A 3 503 8 HOH HOH . F 4 HOH A 4 504 10 HOH HOH . F 4 HOH A 5 505 12 HOH HOH . F 4 HOH A 6 506 13 HOH HOH . F 4 HOH A 7 507 24 HOH HOH . F 4 HOH A 8 508 26 HOH HOH . F 4 HOH A 9 509 27 HOH HOH . F 4 HOH A 10 510 29 HOH HOH . F 4 HOH A 11 511 31 HOH HOH . F 4 HOH A 12 512 33 HOH HOH . F 4 HOH A 13 513 34 HOH HOH . F 4 HOH A 14 514 37 HOH HOH . F 4 HOH A 15 515 41 HOH HOH . F 4 HOH A 16 516 42 HOH HOH . F 4 HOH A 17 517 44 HOH HOH . F 4 HOH A 18 518 47 HOH HOH . F 4 HOH A 19 519 49 HOH HOH . F 4 HOH A 20 520 50 HOH HOH . F 4 HOH A 21 521 52 HOH HOH . F 4 HOH A 22 522 54 HOH HOH . F 4 HOH A 23 523 55 HOH HOH . F 4 HOH A 24 524 56 HOH HOH . F 4 HOH A 25 525 61 HOH HOH . F 4 HOH A 26 526 62 HOH HOH . G 4 HOH B 1 501 2 HOH HOH . G 4 HOH B 2 502 3 HOH HOH . G 4 HOH B 3 503 4 HOH HOH . G 4 HOH B 4 504 5 HOH HOH . G 4 HOH B 5 505 7 HOH HOH . G 4 HOH B 6 506 9 HOH HOH . G 4 HOH B 7 507 11 HOH HOH . G 4 HOH B 8 508 14 HOH HOH . G 4 HOH B 9 509 15 HOH HOH . G 4 HOH B 10 510 16 HOH HOH . G 4 HOH B 11 511 17 HOH HOH . G 4 HOH B 12 512 18 HOH HOH . G 4 HOH B 13 513 20 HOH HOH . G 4 HOH B 14 514 21 HOH HOH . G 4 HOH B 15 515 22 HOH HOH . G 4 HOH B 16 516 25 HOH HOH . G 4 HOH B 17 517 30 HOH HOH . G 4 HOH B 18 518 32 HOH HOH . G 4 HOH B 19 519 35 HOH HOH . G 4 HOH B 20 520 36 HOH HOH . G 4 HOH B 21 521 38 HOH HOH . G 4 HOH B 22 522 39 HOH HOH . G 4 HOH B 23 523 40 HOH HOH . G 4 HOH B 24 524 43 HOH HOH . G 4 HOH B 25 525 45 HOH HOH . G 4 HOH B 26 526 51 HOH HOH . G 4 HOH B 27 527 53 HOH HOH . G 4 HOH B 28 528 57 HOH HOH . G 4 HOH B 29 529 58 HOH HOH . G 4 HOH B 30 530 59 HOH HOH . G 4 HOH B 31 531 60 HOH HOH . G 4 HOH B 32 532 63 HOH HOH . G 4 HOH B 33 533 64 HOH HOH . G 4 HOH B 34 534 66 HOH HOH . G 4 HOH B 35 535 67 HOH HOH . G 4 HOH B 36 536 68 HOH HOH . G 4 HOH B 37 537 69 HOH HOH . G 4 HOH B 38 538 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . C 2 162.991 49.038 5.565 1 28.9 ? OAD 1YE 401 A 1 HETATM 2 C CAQ 1YE . . . C 2 163.951 49.693 5.137 1 31.88 ? CAQ 1YE 401 A 1 HETATM 3 C CAS 1YE . . . C 2 165.012 50.082 5.948 1 28.82 ? CAS 1YE 401 A 1 HETATM 4 C CAJ 1YE . . . C 2 165.024 49.798 7.306 1 26.98 ? CAJ 1YE 401 A 1 HETATM 5 C CAH 1YE . . . C 2 166.13 50.171 8.071 1 28.53 ? CAH 1YE 401 A 1 HETATM 6 C CAN 1YE . . . C 2 167.237 50.842 7.499 1 31.26 ? CAN 1YE 401 A 1 HETATM 7 C CAA 1YE . . . C 2 168.386 51.246 8.285 1 24.52 ? CAA 1YE 401 A 1 HETATM 8 C CAO 1YE . . . C 2 167.2 51.163 6.135 1 30.95 ? CAO 1YE 401 A 1 HETATM 9 C CAB 1YE . . . C 2 168.248 51.869 5.487 1 23.5 ? CAB 1YE 401 A 1 HETATM 10 C CAT 1YE . . . C 2 166.056 50.821 5.426 1 31.37 ? CAT 1YE 401 A 1 HETATM 11 O OAL 1YE . . . C 2 166.098 51.093 4.116 1 29.82 ? OAL 1YE 401 A 1 HETATM 12 C CAU 1YE . . . C 2 165.125 50.661 3.28 1 23.2 ? CAU 1YE 401 A 1 HETATM 13 C CAR 1YE . . . C 2 164.03 49.989 3.787 1 24.45 ? CAR 1YE 401 A 1 HETATM 14 C CAI 1YE . . . C 2 163.05 49.542 2.893 1 23.7 ? CAI 1YE 401 A 1 HETATM 15 C CAF 1YE . . . C 2 163.148 49.831 1.533 1 24.9 ? CAF 1YE 401 A 1 HETATM 16 C CAG 1YE . . . C 2 164.257 50.533 1.042 1 24.7 ? CAG 1YE 401 A 1 HETATM 17 C CAP 1YE . . . C 2 165.25 50.993 1.925 1 29.9 ? CAP 1YE 401 A 1 HETATM 18 C CAK 1YE . . . C 2 166.386 51.724 1.462 1 26.2 ? CAK 1YE 401 A 1 HETATM 19 C CAM 1YE . . . C 2 167.789 51.131 1.752 1 39.78 ? CAM 1YE 401 A 1 HETATM 20 O OAE 1YE . . . C 2 167.893 49.935 2.148 1 40.47 ? OAE 1YE 401 A 1 HETATM 21 O OAC 1YE . . . C 2 168.731 51.931 1.552 1 41.66 ? OAC 1YE 401 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #