data_4QXR # _model_server_result.job_id DdlMVg3M1MWF4AQwAiDrwQ _model_server_result.datetime_utc '2024-10-11 01:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4QXR # _exptl.entry_id 4QXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QXR _cell.length_a 148.576 _cell.length_b 148.576 _cell.length_c 36.202 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4QXR _atom_sites.fract_transf_matrix[1][1] 0.006731 _atom_sites.fract_transf_matrix[1][2] 0.003886 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1YE A 1 401 1 1YE DRG . D 3 SO4 A 1 402 1 SO4 SO4 . E 2 1YE B 1 401 2 1YE DRG . F 4 HOH A 1 501 2 HOH HOH . F 4 HOH A 2 502 3 HOH HOH . F 4 HOH A 3 503 6 HOH HOH . F 4 HOH A 4 504 16 HOH HOH . F 4 HOH A 5 505 17 HOH HOH . F 4 HOH A 6 506 18 HOH HOH . F 4 HOH A 7 507 24 HOH HOH . F 4 HOH A 8 508 25 HOH HOH . F 4 HOH A 9 509 26 HOH HOH . F 4 HOH A 10 510 28 HOH HOH . F 4 HOH A 11 511 29 HOH HOH . F 4 HOH A 12 512 30 HOH HOH . F 4 HOH A 13 513 31 HOH HOH . F 4 HOH A 14 514 32 HOH HOH . F 4 HOH A 15 515 34 HOH HOH . F 4 HOH A 16 516 35 HOH HOH . F 4 HOH A 17 517 38 HOH HOH . F 4 HOH A 18 518 46 HOH HOH . F 4 HOH A 19 519 50 HOH HOH . F 4 HOH A 20 520 65 HOH HOH . F 4 HOH A 21 521 66 HOH HOH . F 4 HOH A 22 522 67 HOH HOH . G 4 HOH B 1 501 1 HOH HOH . G 4 HOH B 2 502 4 HOH HOH . G 4 HOH B 3 503 5 HOH HOH . G 4 HOH B 4 504 7 HOH HOH . G 4 HOH B 5 505 8 HOH HOH . G 4 HOH B 6 506 9 HOH HOH . G 4 HOH B 7 507 10 HOH HOH . G 4 HOH B 8 508 12 HOH HOH . G 4 HOH B 9 509 13 HOH HOH . G 4 HOH B 10 510 14 HOH HOH . G 4 HOH B 11 511 15 HOH HOH . G 4 HOH B 12 512 19 HOH HOH . G 4 HOH B 13 513 21 HOH HOH . G 4 HOH B 14 514 22 HOH HOH . G 4 HOH B 15 515 23 HOH HOH . G 4 HOH B 16 516 39 HOH HOH . G 4 HOH B 17 517 40 HOH HOH . G 4 HOH B 18 518 42 HOH HOH . G 4 HOH B 19 519 45 HOH HOH . G 4 HOH B 20 520 47 HOH HOH . G 4 HOH B 21 521 49 HOH HOH . G 4 HOH B 22 522 51 HOH HOH . G 4 HOH B 23 523 52 HOH HOH . G 4 HOH B 24 524 54 HOH HOH . G 4 HOH B 25 525 55 HOH HOH . G 4 HOH B 26 526 56 HOH HOH . G 4 HOH B 27 527 59 HOH HOH . G 4 HOH B 28 528 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . E 2 108.474 -38.473 -3.971 1 36.96 ? OAD 1YE 401 B 1 HETATM 2 C CAQ 1YE . . . E 2 108.627 -39.628 -4.372 1 49.22 ? CAQ 1YE 401 B 1 HETATM 3 C CAS 1YE . . . E 2 108.52 -40.709 -3.521 1 43.19 ? CAS 1YE 401 B 1 HETATM 4 C CAJ 1YE . . . E 2 108.227 -40.522 -2.176 1 31.16 ? CAJ 1YE 401 B 1 HETATM 5 C CAH 1YE . . . E 2 108.129 -41.637 -1.347 1 32.15 ? CAH 1YE 401 B 1 HETATM 6 C CAN 1YE . . . E 2 108.311 -42.932 -1.845 1 47.34 ? CAN 1YE 401 B 1 HETATM 7 C CAA 1YE . . . E 2 108.213 -44.057 -1.015 1 30.55 ? CAA 1YE 401 B 1 HETATM 8 C CAO 1YE . . . E 2 108.594 -43.114 -3.197 1 44.08 ? CAO 1YE 401 B 1 HETATM 9 C CAB 1YE . . . E 2 108.784 -44.373 -3.763 1 31.6 ? CAB 1YE 401 B 1 HETATM 10 C CAT 1YE . . . E 2 108.702 -42.002 -4.005 1 44.81 ? CAT 1YE 401 B 1 HETATM 11 O OAL 1YE . . . E 2 108.961 -42.249 -5.314 1 40.22 ? OAL 1YE 401 B 1 HETATM 12 C CAU 1YE . . . E 2 109.053 -41.199 -6.163 1 34.93 ? CAU 1YE 401 B 1 HETATM 13 C CAR 1YE . . . E 2 108.884 -39.89 -5.703 1 42.08 ? CAR 1YE 401 B 1 HETATM 14 C CAI 1YE . . . E 2 108.976 -38.828 -6.597 1 36.3 ? CAI 1YE 401 B 1 HETATM 15 C CAF 1YE . . . E 2 109.251 -39.098 -7.93 1 38.45 ? CAF 1YE 401 B 1 HETATM 16 C CAG 1YE . . . E 2 109.418 -40.405 -8.378 1 43.73 ? CAG 1YE 401 B 1 HETATM 17 C CAP 1YE . . . E 2 109.326 -41.476 -7.499 1 34.19 ? CAP 1YE 401 B 1 HETATM 18 C CAK 1YE . . . E 2 109.511 -42.771 -7.991 1 41.63 ? CAK 1YE 401 B 1 HETATM 19 C CAM 1YE . . . E 2 108.391 -43.779 -7.682 1 52.21 ? CAM 1YE 401 B 1 HETATM 20 O OAE 1YE . . . E 2 107.239 -43.341 -7.449 1 53.23 ? OAE 1YE 401 B 1 HETATM 21 O OAC 1YE . . . E 2 108.735 -44.98 -7.713 1 50.44 ? OAC 1YE 401 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #