data_4QXS # _model_server_result.job_id 2aDzZkuyuFc-CMZja8ZcEw _model_server_result.datetime_utc '2024-11-28 19:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4QXS # _exptl.entry_id 4QXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QXS _cell.length_a 110.65 _cell.length_b 110.65 _cell.length_c 77.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.65 110.65 38.96 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4QXS _atom_sites.fract_transf_matrix[1][1] 0.009038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 F 1 401 1 PO4 PO4 . C 2 PO4 F 1 402 2 PO4 PO4 . D 3 WC1 F 1 403 1 WC1 WC1 . E 4 GOL F 1 404 1 GOL GOL . F 5 HOH F 1 501 1 HOH HOH . F 5 HOH F 2 502 2 HOH HOH . F 5 HOH F 3 503 3 HOH HOH . F 5 HOH F 4 504 4 HOH HOH . F 5 HOH F 5 505 5 HOH HOH . F 5 HOH F 6 506 6 HOH HOH . F 5 HOH F 7 507 7 HOH HOH . F 5 HOH F 8 508 8 HOH HOH . F 5 HOH F 9 509 9 HOH HOH . F 5 HOH F 10 510 10 HOH HOH . F 5 HOH F 11 511 11 HOH HOH . F 5 HOH F 12 512 12 HOH HOH . F 5 HOH F 13 513 13 HOH HOH . F 5 HOH F 14 514 14 HOH HOH . F 5 HOH F 15 515 15 HOH HOH . F 5 HOH F 16 516 16 HOH HOH . F 5 HOH F 17 517 17 HOH HOH . F 5 HOH F 18 518 18 HOH HOH . F 5 HOH F 19 519 19 HOH HOH . F 5 HOH F 20 520 20 HOH HOH . F 5 HOH F 21 521 21 HOH HOH . F 5 HOH F 22 522 22 HOH HOH . F 5 HOH F 23 523 23 HOH HOH . F 5 HOH F 24 524 24 HOH HOH . F 5 HOH F 25 525 25 HOH HOH . F 5 HOH F 26 526 26 HOH HOH . F 5 HOH F 27 527 27 HOH HOH . F 5 HOH F 28 528 28 HOH HOH . F 5 HOH F 29 529 29 HOH HOH . F 5 HOH F 30 530 30 HOH HOH . F 5 HOH F 31 531 31 HOH HOH . F 5 HOH F 32 532 32 HOH HOH . F 5 HOH F 33 533 33 HOH HOH . F 5 HOH F 34 534 34 HOH HOH . F 5 HOH F 35 535 35 HOH HOH . F 5 HOH F 36 536 36 HOH HOH . F 5 HOH F 37 537 37 HOH HOH . F 5 HOH F 38 538 38 HOH HOH . F 5 HOH F 39 539 39 HOH HOH . F 5 HOH F 40 540 40 HOH HOH . F 5 HOH F 41 541 41 HOH HOH . F 5 HOH F 42 542 42 HOH HOH . F 5 HOH F 43 543 43 HOH HOH . F 5 HOH F 44 544 44 HOH HOH . F 5 HOH F 45 545 45 HOH HOH . F 5 HOH F 46 546 46 HOH HOH . F 5 HOH F 47 547 47 HOH HOH . F 5 HOH F 48 548 48 HOH HOH . F 5 HOH F 49 549 49 HOH HOH . F 5 HOH F 50 550 50 HOH HOH . F 5 HOH F 51 551 51 HOH HOH . F 5 HOH F 52 552 53 HOH HOH . F 5 HOH F 53 553 54 HOH HOH . F 5 HOH F 54 554 55 HOH HOH . F 5 HOH F 55 555 56 HOH HOH . F 5 HOH F 56 556 57 HOH HOH . F 5 HOH F 57 557 58 HOH HOH . F 5 HOH F 58 558 59 HOH HOH . F 5 HOH F 59 559 60 HOH HOH . F 5 HOH F 60 560 61 HOH HOH . F 5 HOH F 61 561 62 HOH HOH . F 5 HOH F 62 562 63 HOH HOH . F 5 HOH F 63 563 64 HOH HOH . F 5 HOH F 64 564 65 HOH HOH . F 5 HOH F 65 565 66 HOH HOH . F 5 HOH F 66 566 67 HOH HOH . F 5 HOH F 67 567 68 HOH HOH . F 5 HOH F 68 568 69 HOH HOH . F 5 HOH F 69 569 70 HOH HOH . F 5 HOH F 70 570 71 HOH HOH . F 5 HOH F 71 571 72 HOH HOH . F 5 HOH F 72 572 73 HOH HOH . F 5 HOH F 73 573 74 HOH HOH . F 5 HOH F 74 574 75 HOH HOH . F 5 HOH F 75 575 76 HOH HOH . F 5 HOH F 76 576 77 HOH HOH . F 5 HOH F 77 577 78 HOH HOH . F 5 HOH F 78 578 79 HOH HOH . F 5 HOH F 79 579 80 HOH HOH . F 5 HOH F 80 580 81 HOH HOH . F 5 HOH F 81 581 82 HOH HOH . F 5 HOH F 82 582 83 HOH HOH . F 5 HOH F 83 583 84 HOH HOH . F 5 HOH F 84 584 85 HOH HOH . F 5 HOH F 85 585 86 HOH HOH . F 5 HOH F 86 586 87 HOH HOH . F 5 HOH F 87 587 88 HOH HOH . F 5 HOH F 88 588 89 HOH HOH . F 5 HOH F 89 589 90 HOH HOH . F 5 HOH F 90 590 91 HOH HOH . F 5 HOH F 91 591 92 HOH HOH . F 5 HOH F 92 592 93 HOH HOH . F 5 HOH F 93 593 94 HOH HOH . F 5 HOH F 94 594 95 HOH HOH . F 5 HOH F 95 595 96 HOH HOH . F 5 HOH F 96 596 97 HOH HOH . F 5 HOH F 97 597 98 HOH HOH . F 5 HOH F 98 598 99 HOH HOH . F 5 HOH F 99 599 100 HOH HOH . F 5 HOH F 100 600 101 HOH HOH . F 5 HOH F 101 601 102 HOH HOH . F 5 HOH F 102 602 103 HOH HOH . F 5 HOH F 103 603 104 HOH HOH . F 5 HOH F 104 604 105 HOH HOH . F 5 HOH F 105 605 106 HOH HOH . F 5 HOH F 106 606 107 HOH HOH . F 5 HOH F 107 607 108 HOH HOH . F 5 HOH F 108 608 109 HOH HOH . F 5 HOH F 109 609 110 HOH HOH . F 5 HOH F 110 610 111 HOH HOH . F 5 HOH F 111 611 112 HOH HOH . F 5 HOH F 112 612 113 HOH HOH . F 5 HOH F 113 613 114 HOH HOH . F 5 HOH F 114 614 115 HOH HOH . F 5 HOH F 115 615 116 HOH HOH . F 5 HOH F 116 616 117 HOH HOH . F 5 HOH F 117 617 118 HOH HOH . F 5 HOH F 118 618 119 HOH HOH . F 5 HOH F 119 619 120 HOH HOH . F 5 HOH F 120 620 121 HOH HOH . F 5 HOH F 121 621 122 HOH HOH . F 5 HOH F 122 622 123 HOH HOH . F 5 HOH F 123 623 124 HOH HOH . F 5 HOH F 124 624 125 HOH HOH . F 5 HOH F 125 625 126 HOH HOH . F 5 HOH F 126 626 127 HOH HOH . F 5 HOH F 127 627 128 HOH HOH . F 5 HOH F 128 628 129 HOH HOH . F 5 HOH F 129 629 130 HOH HOH . F 5 HOH F 130 630 131 HOH HOH . F 5 HOH F 131 631 132 HOH HOH . F 5 HOH F 132 632 133 HOH HOH . F 5 HOH F 133 633 134 HOH HOH . F 5 HOH F 134 634 135 HOH HOH . F 5 HOH F 135 635 136 HOH HOH . F 5 HOH F 136 636 137 HOH HOH . F 5 HOH F 137 637 138 HOH HOH . F 5 HOH F 138 638 139 HOH HOH . F 5 HOH F 139 639 140 HOH HOH . F 5 HOH F 140 640 141 HOH HOH . F 5 HOH F 141 641 142 HOH HOH . F 5 HOH F 142 642 143 HOH HOH . F 5 HOH F 143 643 144 HOH HOH . F 5 HOH F 144 644 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 11.621 98.762 12.767 1 65.77 ? C1 GOL 404 F 1 HETATM 2 O O1 GOL . . . E 4 10.997 98.248 13.932 1 59.6 ? O1 GOL 404 F 1 HETATM 3 C C2 GOL . . . E 4 11.717 97.749 11.66 1 63.93 ? C2 GOL 404 F 1 HETATM 4 O O2 GOL . . . E 4 12.442 98.548 10.747 1 68.95 ? O2 GOL 404 F 1 HETATM 5 C C3 GOL . . . E 4 12.481 96.52 12.108 1 57.94 ? C3 GOL 404 F 1 HETATM 6 O O3 GOL . . . E 4 13.605 96.18 11.302 1 51.17 ? O3 GOL 404 F 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #