data_4QYF # _model_server_result.job_id '_dIj-5RVpcll0l8CYvvfKQ' _model_server_result.datetime_utc '2024-11-23 11:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4QYF # _exptl.entry_id 4QYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[3-amino-6-(3-hydroxyphenyl)pyrazin-2-yl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.96 _cell.angle_gamma 90 _cell.entry_id 4QYF _cell.length_a 44.971 _cell.length_b 65.948 _cell.length_c 58.118 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H13 N3 O3' _chem_comp.formula_weight 307.303 _chem_comp.id 3DV _chem_comp.mon_nstd_flag . _chem_comp.name '4-[3-amino-6-(3-hydroxyphenyl)pyrazin-2-yl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C11 3DV doub 1 n n O2 C11 3DV sing 2 n n C11 C8 3DV sing 3 n n C7 C8 3DV doub 4 n y C7 C6 3DV sing 5 n y C8 C9 3DV sing 6 n y C6 C5 3DV doub 7 n y C9 C10 3DV doub 8 n y C5 C10 3DV sing 9 n y C5 C1 3DV sing 10 n n C14 C13 3DV doub 11 n y C14 C15 3DV sing 12 n y C13 C12 3DV sing 13 n y N2 C1 3DV doub 14 n y N2 C4 3DV sing 15 n y C1 C2 3DV sing 16 n y C15 C16 3DV doub 17 n y C12 C4 3DV sing 18 n n C12 C17 3DV doub 19 n y C4 C3 3DV doub 20 n y N3 C2 3DV sing 21 n n C2 N1 3DV doub 22 n y C3 N1 3DV sing 23 n y C16 C17 3DV sing 24 n y C16 O3 3DV sing 25 n n O2 H1 3DV sing 26 n n C7 H2 3DV sing 27 n n C6 H3 3DV sing 28 n n C9 H4 3DV sing 29 n n C10 H5 3DV sing 30 n n C3 H6 3DV sing 31 n n N3 H7 3DV sing 32 n n N3 H8 3DV sing 33 n n C17 H9 3DV sing 34 n n O3 H10 3DV sing 35 n n C15 H11 3DV sing 36 n n C14 H12 3DV sing 37 n n C13 H13 3DV sing 38 n n # _atom_sites.entry_id 4QYF _atom_sites.fract_transf_matrix[1][1] 0.022237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001539 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3DV A 1 301 1 3DV XXX . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 7 HOH HOH . C 3 HOH A 7 407 9 HOH HOH . C 3 HOH A 8 408 10 HOH HOH . C 3 HOH A 9 409 11 HOH HOH . C 3 HOH A 10 410 12 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 14 HOH HOH . C 3 HOH A 13 413 15 HOH HOH . C 3 HOH A 14 414 16 HOH HOH . C 3 HOH A 15 415 17 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 19 HOH HOH . C 3 HOH A 18 418 20 HOH HOH . C 3 HOH A 19 419 21 HOH HOH . C 3 HOH A 20 420 22 HOH HOH . C 3 HOH A 21 421 23 HOH HOH . C 3 HOH A 22 422 24 HOH HOH . C 3 HOH A 23 423 25 HOH HOH . C 3 HOH A 24 424 26 HOH HOH . C 3 HOH A 25 425 27 HOH HOH . C 3 HOH A 26 426 28 HOH HOH . C 3 HOH A 27 427 29 HOH HOH . C 3 HOH A 28 428 30 HOH HOH . C 3 HOH A 29 429 31 HOH HOH . C 3 HOH A 30 430 32 HOH HOH . C 3 HOH A 31 431 33 HOH HOH . C 3 HOH A 32 432 34 HOH HOH . C 3 HOH A 33 433 35 HOH HOH . C 3 HOH A 34 434 36 HOH HOH . C 3 HOH A 35 435 37 HOH HOH . C 3 HOH A 36 436 38 HOH HOH . C 3 HOH A 37 437 39 HOH HOH . C 3 HOH A 38 438 40 HOH HOH . C 3 HOH A 39 439 41 HOH HOH . C 3 HOH A 40 440 42 HOH HOH . C 3 HOH A 41 441 43 HOH HOH . C 3 HOH A 42 442 44 HOH HOH . C 3 HOH A 43 443 45 HOH HOH . C 3 HOH A 44 444 46 HOH HOH . C 3 HOH A 45 445 47 HOH HOH . C 3 HOH A 46 446 48 HOH HOH . C 3 HOH A 47 447 49 HOH HOH . C 3 HOH A 48 448 50 HOH HOH . C 3 HOH A 49 449 51 HOH HOH . C 3 HOH A 50 450 52 HOH HOH . C 3 HOH A 51 451 53 HOH HOH . C 3 HOH A 52 452 54 HOH HOH . C 3 HOH A 53 453 55 HOH HOH . C 3 HOH A 54 454 56 HOH HOH . C 3 HOH A 55 455 57 HOH HOH . C 3 HOH A 56 456 58 HOH HOH . C 3 HOH A 57 457 59 HOH HOH . C 3 HOH A 58 458 60 HOH HOH . C 3 HOH A 59 459 61 HOH HOH . C 3 HOH A 60 460 62 HOH HOH . C 3 HOH A 61 461 63 HOH HOH . C 3 HOH A 62 462 64 HOH HOH . C 3 HOH A 63 463 65 HOH HOH . C 3 HOH A 64 464 66 HOH HOH . C 3 HOH A 65 465 67 HOH HOH . C 3 HOH A 66 466 68 HOH HOH . C 3 HOH A 67 467 69 HOH HOH . C 3 HOH A 68 468 70 HOH HOH . C 3 HOH A 69 469 71 HOH HOH . C 3 HOH A 70 470 73 HOH HOH . C 3 HOH A 71 471 74 HOH HOH . C 3 HOH A 72 472 75 HOH HOH . C 3 HOH A 73 473 76 HOH HOH . C 3 HOH A 74 474 77 HOH HOH . C 3 HOH A 75 475 78 HOH HOH . C 3 HOH A 76 476 79 HOH HOH . C 3 HOH A 77 477 80 HOH HOH . C 3 HOH A 78 478 81 HOH HOH . C 3 HOH A 79 479 82 HOH HOH . C 3 HOH A 80 480 83 HOH HOH . C 3 HOH A 81 481 84 HOH HOH . C 3 HOH A 82 482 86 HOH HOH . C 3 HOH A 83 483 87 HOH HOH . C 3 HOH A 84 484 88 HOH HOH . C 3 HOH A 85 485 89 HOH HOH . C 3 HOH A 86 486 90 HOH HOH . C 3 HOH A 87 487 91 HOH HOH . C 3 HOH A 88 488 92 HOH HOH . C 3 HOH A 89 489 93 HOH HOH . C 3 HOH A 90 490 94 HOH HOH . C 3 HOH A 91 491 95 HOH HOH . C 3 HOH A 92 492 96 HOH HOH . C 3 HOH A 93 493 98 HOH HOH . C 3 HOH A 94 494 99 HOH HOH . C 3 HOH A 95 495 100 HOH HOH . C 3 HOH A 96 496 101 HOH HOH . C 3 HOH A 97 497 102 HOH HOH . C 3 HOH A 98 498 103 HOH HOH . C 3 HOH A 99 499 104 HOH HOH . C 3 HOH A 100 500 105 HOH HOH . C 3 HOH A 101 501 106 HOH HOH . C 3 HOH A 102 502 107 HOH HOH . C 3 HOH A 103 503 108 HOH HOH . C 3 HOH A 104 504 109 HOH HOH . C 3 HOH A 105 505 110 HOH HOH . C 3 HOH A 106 506 111 HOH HOH . C 3 HOH A 107 507 112 HOH HOH . C 3 HOH A 108 508 114 HOH HOH . C 3 HOH A 109 509 115 HOH HOH . C 3 HOH A 110 510 116 HOH HOH . C 3 HOH A 111 511 117 HOH HOH . C 3 HOH A 112 512 118 HOH HOH . C 3 HOH A 113 513 119 HOH HOH . C 3 HOH A 114 514 120 HOH HOH . C 3 HOH A 115 515 121 HOH HOH . C 3 HOH A 116 516 122 HOH HOH . C 3 HOH A 117 517 123 HOH HOH . C 3 HOH A 118 518 125 HOH HOH . C 3 HOH A 119 519 126 HOH HOH . C 3 HOH A 120 520 127 HOH HOH . C 3 HOH A 121 521 129 HOH HOH . C 3 HOH A 122 522 130 HOH HOH . C 3 HOH A 123 523 131 HOH HOH . C 3 HOH A 124 524 132 HOH HOH . C 3 HOH A 125 525 133 HOH HOH . C 3 HOH A 126 526 134 HOH HOH . C 3 HOH A 127 527 135 HOH HOH . C 3 HOH A 128 528 136 HOH HOH . C 3 HOH A 129 529 137 HOH HOH . C 3 HOH A 130 530 138 HOH HOH . C 3 HOH A 131 531 139 HOH HOH . C 3 HOH A 132 532 140 HOH HOH . C 3 HOH A 133 533 141 HOH HOH . C 3 HOH A 134 534 142 HOH HOH . C 3 HOH A 135 535 143 HOH HOH . C 3 HOH A 136 536 144 HOH HOH . C 3 HOH A 137 537 145 HOH HOH . C 3 HOH A 138 538 146 HOH HOH . C 3 HOH A 139 539 147 HOH HOH . C 3 HOH A 140 540 148 HOH HOH . C 3 HOH A 141 541 149 HOH HOH . C 3 HOH A 142 542 150 HOH HOH . C 3 HOH A 143 543 151 HOH HOH . C 3 HOH A 144 544 152 HOH HOH . C 3 HOH A 145 545 153 HOH HOH . C 3 HOH A 146 546 154 HOH HOH . C 3 HOH A 147 547 155 HOH HOH . C 3 HOH A 148 548 156 HOH HOH . C 3 HOH A 149 549 157 HOH HOH . C 3 HOH A 150 550 158 HOH HOH . C 3 HOH A 151 551 159 HOH HOH . C 3 HOH A 152 552 160 HOH HOH . C 3 HOH A 153 553 161 HOH HOH . C 3 HOH A 154 554 162 HOH HOH . C 3 HOH A 155 555 163 HOH HOH . C 3 HOH A 156 556 164 HOH HOH . C 3 HOH A 157 557 165 HOH HOH . C 3 HOH A 158 558 166 HOH HOH . C 3 HOH A 159 559 167 HOH HOH . C 3 HOH A 160 560 168 HOH HOH . C 3 HOH A 161 561 169 HOH HOH . C 3 HOH A 162 562 170 HOH HOH . C 3 HOH A 163 563 171 HOH HOH . C 3 HOH A 164 564 172 HOH HOH . C 3 HOH A 165 565 173 HOH HOH . C 3 HOH A 166 566 174 HOH HOH . C 3 HOH A 167 567 175 HOH HOH . C 3 HOH A 168 568 176 HOH HOH . C 3 HOH A 169 569 177 HOH HOH . C 3 HOH A 170 570 178 HOH HOH . C 3 HOH A 171 571 179 HOH HOH . C 3 HOH A 172 572 180 HOH HOH . C 3 HOH A 173 573 181 HOH HOH . C 3 HOH A 174 574 182 HOH HOH . C 3 HOH A 175 575 183 HOH HOH . C 3 HOH A 176 576 184 HOH HOH . C 3 HOH A 177 577 185 HOH HOH . C 3 HOH A 178 578 186 HOH HOH . C 3 HOH A 179 579 187 HOH HOH . C 3 HOH A 180 580 188 HOH HOH . C 3 HOH A 181 581 189 HOH HOH . C 3 HOH A 182 582 190 HOH HOH . C 3 HOH A 183 583 191 HOH HOH . C 3 HOH A 184 584 192 HOH HOH . C 3 HOH A 185 585 194 HOH HOH . C 3 HOH A 186 586 195 HOH HOH . C 3 HOH A 187 587 196 HOH HOH . C 3 HOH A 188 588 197 HOH HOH . C 3 HOH A 189 589 198 HOH HOH . C 3 HOH A 190 590 200 HOH HOH . C 3 HOH A 191 591 201 HOH HOH . C 3 HOH A 192 592 202 HOH HOH . C 3 HOH A 193 593 203 HOH HOH . C 3 HOH A 194 594 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 3DV . . . B 2 10.817 7.165 15.605 1 36.24 ? O2 3DV 301 A 1 HETATM 2 C C11 3DV . . . B 2 9.756 6.496 15.606 1 34.11 ? C11 3DV 301 A 1 HETATM 3 O O1 3DV . . . B 2 9.652 5.428 14.979 1 30.4 ? O1 3DV 301 A 1 HETATM 4 C C8 3DV . . . B 2 8.589 6.995 16.402 1 35.99 ? C8 3DV 301 A 1 HETATM 5 C C7 3DV . . . B 2 7.304 6.976 15.882 1 36.78 ? C7 3DV 301 A 1 HETATM 6 C C6 3DV . . . B 2 6.236 7.441 16.646 1 35.94 ? C6 3DV 301 A 1 HETATM 7 C C9 3DV . . . B 2 8.787 7.457 17.696 1 38.82 ? C9 3DV 301 A 1 HETATM 8 C C10 3DV . . . B 2 7.729 7.921 18.476 1 37.16 ? C10 3DV 301 A 1 HETATM 9 C C5 3DV . . . B 2 6.436 7.898 17.951 1 35.09 ? C5 3DV 301 A 1 HETATM 10 C C1 3DV . . . B 2 5.264 8.435 18.694 1 34.76 ? C1 3DV 301 A 1 HETATM 11 N N2 3DV . . . B 2 4.039 7.837 18.66 1 32.76 ? N2 3DV 301 A 1 HETATM 12 C C4 3DV . . . B 2 3.004 8.416 19.333 1 33.91 ? C4 3DV 301 A 1 HETATM 13 C C3 3DV . . . B 2 3.187 9.641 20 1 31.82 ? C3 3DV 301 A 1 HETATM 14 N N1 3DV . . . B 2 4.382 10.229 20.011 1 27 ? N1 3DV 301 A 1 HETATM 15 C C2 3DV . . . B 2 5.43 9.656 19.352 1 31.43 ? C2 3DV 301 A 1 HETATM 16 N N3 3DV . . . B 2 6.647 10.26 19.349 1 28.2 ? N3 3DV 301 A 1 HETATM 17 C C12 3DV . . . B 2 1.644 7.826 19.285 1 33.14 ? C12 3DV 301 A 1 HETATM 18 C C17 3DV . . . B 2 0.693 8.106 20.26 1 35.15 ? C17 3DV 301 A 1 HETATM 19 C C16 3DV . . . B 2 -0.585 7.578 20.154 1 35.6 ? C16 3DV 301 A 1 HETATM 20 O O3 3DV . . . B 2 -1.478 7.845 21.141 1 36.81 ? O3 3DV 301 A 1 HETATM 21 C C15 3DV . . . B 2 -0.939 6.788 19.053 1 36.62 ? C15 3DV 301 A 1 HETATM 22 C C14 3DV . . . B 2 0.001 6.534 18.052 1 35.48 ? C14 3DV 301 A 1 HETATM 23 C C13 3DV . . . B 2 1.284 7.065 18.163 1 34.67 ? C13 3DV 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #