data_4QYR # _model_server_result.job_id -cjFs3YqI9sM1p-AC7cT8A _model_server_result.datetime_utc '2024-12-10 16:05:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3201}' # _entry.id 4QYR # _exptl.entry_id 4QYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QYR _cell.length_a 145.418 _cell.length_b 145.418 _cell.length_c 67.718 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 87 A LEU 2625 1_555 A N MSE 88 A MSE 2626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 88 A MSE 2626 1_555 A N ASP 89 A ASP 2627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C SER 150 A SER 2688 1_555 A N MSE 151 A MSE 2689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 151 A MSE 2689 1_555 A N LEU 152 A LEU 2690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C GLU 193 A GLU 2731 1_555 A N MSE 194 A MSE 2732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 194 A MSE 2732 1_555 A N ALA 195 A ALA 2733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C HIS 213 A HIS 2751 1_555 A N MSE 214 A MSE 2752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 214 A MSE 2752 1_555 A N ALA 215 A ALA 2753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C GLY 216 A GLY 2754 1_555 A N MSE 217 A MSE 2755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 217 A MSE 2755 1_555 A N LEU 218 A LEU 2756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C ALA 291 A ALA 2829 1_555 A N MSE 292 A MSE 2830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 292 A MSE 2830 1_555 A N ARG 293 A ARG 2831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C ALA 369 A ALA 2907 1_555 A N MSE 370 A MSE 2908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 370 A MSE 2908 1_555 A N ARG 371 A ARG 2909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C ALA 501 A ALA 3039 1_555 A N MSE 502 A MSE 3040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 502 A MSE 3040 1_555 A N GLU 503 A GLU 3041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C SER 512 A SER 3050 1_555 A N MSE 513 A MSE 3051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 A C MSE 513 A MSE 3051 1_555 A N ASP 514 A ASP 3052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 A C ALA 581 A ALA 3119 1_555 A N MSE 582 A MSE 3120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C MSE 582 A MSE 3120 1_555 A N HIS 583 A HIS 3121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 4QYR _atom_sites.fract_transf_matrix[1][1] 0.006877 _atom_sites.fract_transf_matrix[1][2] 0.00397 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 3201 3160 GOL GOL . C 3 ACY A 1 3202 3161 ACY ACY . D 4 CL A 1 3203 3162 CL CL . E 5 HOH A 1 3301 1 HOH HOH . E 5 HOH A 2 3302 2 HOH HOH . E 5 HOH A 3 3303 3 HOH HOH . E 5 HOH A 4 3304 4 HOH HOH . E 5 HOH A 5 3305 5 HOH HOH . E 5 HOH A 6 3306 6 HOH HOH . E 5 HOH A 7 3307 7 HOH HOH . E 5 HOH A 8 3308 8 HOH HOH . E 5 HOH A 9 3309 9 HOH HOH . E 5 HOH A 10 3310 10 HOH HOH . E 5 HOH A 11 3311 11 HOH HOH . E 5 HOH A 12 3312 12 HOH HOH . E 5 HOH A 13 3313 13 HOH HOH . E 5 HOH A 14 3314 14 HOH HOH . E 5 HOH A 15 3315 15 HOH HOH . E 5 HOH A 16 3316 16 HOH HOH . E 5 HOH A 17 3317 17 HOH HOH . E 5 HOH A 18 3318 18 HOH HOH . E 5 HOH A 19 3319 19 HOH HOH . E 5 HOH A 20 3320 20 HOH HOH . E 5 HOH A 21 3321 21 HOH HOH . E 5 HOH A 22 3322 22 HOH HOH . E 5 HOH A 23 3323 23 HOH HOH . E 5 HOH A 24 3324 24 HOH HOH . E 5 HOH A 25 3325 25 HOH HOH . E 5 HOH A 26 3326 26 HOH HOH . E 5 HOH A 27 3327 27 HOH HOH . E 5 HOH A 28 3328 28 HOH HOH . E 5 HOH A 29 3329 29 HOH HOH . E 5 HOH A 30 3330 30 HOH HOH . E 5 HOH A 31 3331 31 HOH HOH . E 5 HOH A 32 3332 32 HOH HOH . E 5 HOH A 33 3333 33 HOH HOH . E 5 HOH A 34 3334 34 HOH HOH . E 5 HOH A 35 3335 35 HOH HOH . E 5 HOH A 36 3336 36 HOH HOH . E 5 HOH A 37 3337 37 HOH HOH . E 5 HOH A 38 3338 38 HOH HOH . E 5 HOH A 39 3339 39 HOH HOH . E 5 HOH A 40 3340 40 HOH HOH . E 5 HOH A 41 3341 41 HOH HOH . E 5 HOH A 42 3342 42 HOH HOH . E 5 HOH A 43 3343 43 HOH HOH . E 5 HOH A 44 3344 44 HOH HOH . E 5 HOH A 45 3345 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 56.314 57.519 7.193 1 93.15 ? C1 GOL 3201 A 1 HETATM 2 O O1 GOL . . . B 2 55.313 58.149 7.966 1 92.17 ? O1 GOL 3201 A 1 HETATM 3 C C2 GOL . . . B 2 56.761 58.431 6.049 1 92.91 ? C2 GOL 3201 A 1 HETATM 4 O O2 GOL . . . B 2 58.171 58.461 5.982 1 94.07 ? O2 GOL 3201 A 1 HETATM 5 C C3 GOL . . . B 2 56.223 57.906 4.726 1 89.88 ? C3 GOL 3201 A 1 HETATM 6 O O3 GOL . . . B 2 56.953 56.753 4.376 1 88.93 ? O3 GOL 3201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #