data_4QZ8
#
_model_server_result.job_id            eSb0iFiazKumL8QxZfGczw 
_model_server_result.datetime_utc      '2024-10-18 16:29:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qz8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":603}' 
#
_entry.id    4QZ8 
#
_exptl.entry_id    4QZ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.158 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.98 
_cell.angle_gamma         90 
_cell.entry_id            4QZ8 
_cell.length_a            59.329 
_cell.length_b            74.259 
_cell.length_c            118.969 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QZ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 143 A THR 253 1_555 F NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc2 A O VAL 145 A VAL 255 1_555 F NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc3 A O VAL 148 A VAL 258 1_555 F NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc5 A OD2 ASP 235 A ASP 345 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 E MG MG . A MG 601 1_555 G O2A DCT . A DCT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc7 E MG MG . A MG 601 1_555 G O2B DCT . A DCT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc8 E MG MG . A MG 601 1_555 G O2G DCT . A DCT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc9 E MG MG . A MG 601 1_555 H O HOH . A HOH 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc10 F NA NA . A NA 602 1_555 D OP1 DA 5 U DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
hydrog WATSON-CRICK hydrog1 B N1 DA 1 D DA 1 1_555 C N3 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N6 DA 1 D DA 1 1_555 C O4 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N1 DA 2 D DA 2 1_555 C N3 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N6 DA 2 D DA 2 1_555 C O4 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N1 DA 3 D DA 3 1_555 C N3 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N6 DA 3 D DA 3 1_555 C O4 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 DA 4 D DA 4 1_555 C N3 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N6 DA 4 D DA 4 1_555 C O4 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N1 DA 5 D DA 5 1_555 C N3 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N6 DA 5 D DA 5 1_555 C O4 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C9 H16 N3 O12 P3' 
_chem_comp.formula_weight    451.158 
_chem_comp.id                DCT 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DCT sing 156 n n 
N1 C6 DCT sing 157 n n 
N1 C1' DCT sing 158 n n 
C2 N3 DCT sing 159 n n 
C2 O2 DCT doub 160 n n 
N3 C4 DCT doub 161 n n 
C4 C5 DCT sing 162 n n 
C4 N4 DCT sing 163 n n 
C5 C6 DCT doub 164 n n 
C5 H5 DCT sing 165 n n 
C6 H6 DCT sing 166 n n 
N4 HN41 DCT sing 167 n n 
N4 HN42 DCT sing 168 n n 
C1' C2' DCT sing 169 n n 
C1' O4' DCT sing 170 n n 
C1' H1' DCT sing 171 n n 
C2' C3' DCT sing 172 n n 
C2' H2' DCT sing 173 n n 
C2' "H2''" DCT sing 174 n n 
C3' C4' DCT sing 175 n n 
C3' "H3'1" DCT sing 176 n n 
C3' "H3'2" DCT sing 177 n n 
C4' O4' DCT sing 178 n n 
C4' C5' DCT sing 179 n n 
C4' H4' DCT sing 180 n n 
C5' O5' DCT sing 181 n n 
C5' H5' DCT sing 182 n n 
C5' "H5''" DCT sing 183 n n 
O5' PA DCT sing 184 n n 
PA O1A DCT doub 185 n n 
PA O2A DCT sing 186 n n 
PA O3A DCT sing 187 n n 
O2A HOA2 DCT sing 188 n n 
O3A PB DCT sing 189 n n 
PB O1B DCT doub 190 n n 
PB O2B DCT sing 191 n n 
PB O3B DCT sing 192 n n 
O2B HOB2 DCT sing 193 n n 
O3B PG DCT sing 194 n n 
PG O1G DCT doub 195 n n 
PG O2G DCT sing 196 n n 
PG O3G DCT sing 197 n n 
O2G HOG2 DCT sing 198 n n 
O3G HOG3 DCT sing 199 n n 
#
_atom_sites.entry_id                     4QZ8 
_atom_sites.fract_transf_matrix[1][1]    0.016855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002363 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013466 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 MG A 1 601 1 MG MG . 
F 5 NA A 1 602 2 NA NA . 
G 6 DCT A 1 603 1 DCT DCT . 
H 7 HOH A 1 701 1 HOH HOH . 
H 7 HOH A 2 702 2 HOH HOH . 
H 7 HOH A 3 703 4 HOH HOH . 
H 7 HOH A 4 704 5 HOH HOH . 
H 7 HOH A 5 705 6 HOH HOH . 
H 7 HOH A 6 706 7 HOH HOH . 
H 7 HOH A 7 707 8 HOH HOH . 
H 7 HOH A 8 708 9 HOH HOH . 
H 7 HOH A 9 709 10 HOH HOH . 
H 7 HOH A 10 710 11 HOH HOH . 
H 7 HOH A 11 711 13 HOH HOH . 
H 7 HOH A 12 712 14 HOH HOH . 
H 7 HOH A 13 713 15 HOH HOH . 
H 7 HOH A 14 714 17 HOH HOH . 
H 7 HOH A 15 715 18 HOH HOH . 
H 7 HOH A 16 716 19 HOH HOH . 
H 7 HOH A 17 717 20 HOH HOH . 
H 7 HOH A 18 718 21 HOH HOH . 
H 7 HOH A 19 719 23 HOH HOH . 
H 7 HOH A 20 720 24 HOH HOH . 
H 7 HOH A 21 721 25 HOH HOH . 
H 7 HOH A 22 722 26 HOH HOH . 
H 7 HOH A 23 723 27 HOH HOH . 
H 7 HOH A 24 724 28 HOH HOH . 
H 7 HOH A 25 725 30 HOH HOH . 
H 7 HOH A 26 726 31 HOH HOH . 
H 7 HOH A 27 727 34 HOH HOH . 
H 7 HOH A 28 728 35 HOH HOH . 
H 7 HOH A 29 729 37 HOH HOH . 
H 7 HOH A 30 730 39 HOH HOH . 
H 7 HOH A 31 731 40 HOH HOH . 
H 7 HOH A 32 732 41 HOH HOH . 
H 7 HOH A 33 733 43 HOH HOH . 
H 7 HOH A 34 734 44 HOH HOH . 
H 7 HOH A 35 735 46 HOH HOH . 
H 7 HOH A 36 736 47 HOH HOH . 
H 7 HOH A 37 737 49 HOH HOH . 
H 7 HOH A 38 738 50 HOH HOH . 
H 7 HOH A 39 739 54 HOH HOH . 
H 7 HOH A 40 740 57 HOH HOH . 
H 7 HOH A 41 741 58 HOH HOH . 
H 7 HOH A 42 742 59 HOH HOH . 
H 7 HOH A 43 743 60 HOH HOH . 
H 7 HOH A 44 744 62 HOH HOH . 
H 7 HOH A 45 745 63 HOH HOH . 
H 7 HOH A 46 746 64 HOH HOH . 
H 7 HOH A 47 747 65 HOH HOH . 
H 7 HOH A 48 748 66 HOH HOH . 
H 7 HOH A 49 749 67 HOH HOH . 
H 7 HOH A 50 750 68 HOH HOH . 
H 7 HOH A 51 751 69 HOH HOH . 
H 7 HOH A 52 752 70 HOH HOH . 
H 7 HOH A 53 753 71 HOH HOH . 
H 7 HOH A 54 754 72 HOH HOH . 
H 7 HOH A 55 755 73 HOH HOH . 
H 7 HOH A 56 756 74 HOH HOH . 
H 7 HOH A 57 757 75 HOH HOH . 
H 7 HOH A 58 758 76 HOH HOH . 
H 7 HOH A 59 759 78 HOH HOH . 
H 7 HOH A 60 760 80 HOH HOH . 
H 7 HOH A 61 761 81 HOH HOH . 
H 7 HOH A 62 762 83 HOH HOH . 
H 7 HOH A 63 763 86 HOH HOH . 
H 7 HOH A 64 764 87 HOH HOH . 
H 7 HOH A 65 765 89 HOH HOH . 
I 7 HOH D 1 101 3 HOH HOH . 
I 7 HOH D 2 102 12 HOH HOH . 
I 7 HOH D 3 103 16 HOH HOH . 
I 7 HOH D 4 104 22 HOH HOH . 
I 7 HOH D 5 105 29 HOH HOH . 
I 7 HOH D 6 106 32 HOH HOH . 
I 7 HOH D 7 107 38 HOH HOH . 
I 7 HOH D 8 108 42 HOH HOH . 
I 7 HOH D 9 109 55 HOH HOH . 
I 7 HOH D 10 110 79 HOH HOH . 
J 7 HOH T 1 101 36 HOH HOH . 
J 7 HOH T 2 102 48 HOH HOH . 
J 7 HOH T 3 103 51 HOH HOH . 
J 7 HOH T 4 104 52 HOH HOH . 
J 7 HOH T 5 105 53 HOH HOH . 
J 7 HOH T 6 106 56 HOH HOH . 
J 7 HOH T 7 107 61 HOH HOH . 
J 7 HOH T 8 108 88 HOH HOH . 
K 7 HOH U 1 101 33 HOH HOH . 
K 7 HOH U 2 102 45 HOH HOH . 
K 7 HOH U 3 103 77 HOH HOH . 
K 7 HOH U 4 104 82 HOH HOH . 
K 7 HOH U 5 105 84 HOH HOH . 
K 7 HOH U 6 106 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCT . . . G 6 6.918 -1.675 31.803 1 54.13 ? N1 DCT 603 A 1 
HETATM 2 C C2 DCT . . . G 6 6.956 -2.299 30.574 1 51.63 ? C2 DCT 603 A 1 
HETATM 3 N N3 DCT . . . G 6 5.889 -3.032 30.156 1 50.87 ? N3 DCT 603 A 1 
HETATM 4 C C4 DCT . . . G 6 4.747 -3.173 30.923 1 51.29 ? C4 DCT 603 A 1 
HETATM 5 C C5 DCT . . . G 6 4.635 -2.594 32.224 1 52.55 ? C5 DCT 603 A 1 
HETATM 6 C C6 DCT . . . G 6 5.727 -1.829 32.645 1 55.39 ? C6 DCT 603 A 1 
HETATM 7 O O2 DCT . . . G 6 7.927 -2.222 29.86 1 53.42 ? O2 DCT 603 A 1 
HETATM 8 N N4 DCT . . . G 6 3.703 -3.9 30.455 1 51.4 ? N4 DCT 603 A 1 
HETATM 9 C C1' DCT . . . G 6 8.048 -0.935 32.306 1 53.35 ? C1' DCT 603 A 1 
HETATM 10 C C2' DCT . . . G 6 7.929 0.539 32.068 1 55.23 ? C2' DCT 603 A 1 
HETATM 11 C C3' DCT . . . G 6 7.385 1.11 33.404 1 56.68 ? C3' DCT 603 A 1 
HETATM 12 C C4' DCT . . . G 6 8.066 0.189 34.405 1 56.24 ? C4' DCT 603 A 1 
HETATM 13 O O4' DCT . . . G 6 8.129 -1.113 33.726 1 55.16 ? O4' DCT 603 A 1 
HETATM 14 C C5' DCT . . . G 6 7.149 0.304 35.549 1 55.32 ? C5' DCT 603 A 1 
HETATM 15 O O5' DCT . . . G 6 5.965 -0.404 35.422 1 60.24 ? O5' DCT 603 A 1 
HETATM 16 P PA DCT . . . G 6 4.661 0.446 35.996 1 68.3 ? PA DCT 603 A 1 
HETATM 17 O O1A DCT . . . G 6 3.281 -0.351 35.701 1 67.28 ? O1A DCT 603 A 1 
HETATM 18 O O2A DCT . . . G 6 4.786 0.592 37.471 1 71.82 ? O2A DCT 603 A 1 
HETATM 19 O O3A DCT . . . G 6 4.925 1.83 35.138 1 67.72 ? O3A DCT 603 A 1 
HETATM 20 P PB DCT . . . G 6 4.407 3.301 35.281 1 66.75 ? PB DCT 603 A 1 
HETATM 21 O O1B DCT . . . G 6 5.163 4.15 34.248 1 55.66 ? O1B DCT 603 A 1 
HETATM 22 O O2B DCT . . . G 6 5.342 3.746 36.56 1 72 ? O2B DCT 603 A 1 
HETATM 23 O O3B DCT . . . G 6 2.907 3.843 35.577 1 71.22 ? O3B DCT 603 A 1 
HETATM 24 P PG DCT . . . G 6 2.303 4.391 36.982 1 74.15 ? PG DCT 603 A 1 
HETATM 25 O O1G DCT . . . G 6 0.695 4.281 37.084 1 69.66 ? O1G DCT 603 A 1 
HETATM 26 O O2G DCT . . . G 6 2.798 3.623 38.153 1 77.99 ? O2G DCT 603 A 1 
HETATM 27 O O3G DCT . . . G 6 2.953 5.922 37.118 1 75.67 ? O3G DCT 603 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#