data_4QZE # _model_server_result.job_id tY5Wc5s4TzlEE1pqvFhIow _model_server_result.datetime_utc '2024-11-13 05:28:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 4QZE # _exptl.entry_id 4QZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.19 _cell.angle_gamma 90 _cell.entry_id 4QZE _cell.length_a 58.033 _cell.length_b 71.608 _cell.length_c 113.948 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 143 A THR 253 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 A O VAL 145 A VAL 255 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A O VAL 148 A VAL 258 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 A OD2 ASP 233 A ASP 343 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 A OD2 ASP 235 A ASP 345 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 A OD1 ASP 235 A ASP 345 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc8 A OD2 ASP 324 A ASP 434 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc9 E MG MG . A MG 601 1_555 H O2B DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 E MG MG . A MG 601 1_555 H O2A DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc11 E MG MG . A MG 601 1_555 H O2G DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 E MG MG . A MG 601 1_555 I O HOH . A HOH 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc13 F MG MG . A MG 602 1_555 H O2A DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc14 G NA NA . A NA 603 1_555 I O HOH . A HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc15 G NA NA . A NA 603 1_555 D OP1 DA 5 U DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc16 G NA NA . A NA 603 1_555 L O HOH . U HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 D DA 1 1_555 C N3 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 D DA 1 1_555 C O4 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 2 D DA 2 1_555 C N3 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 2 D DA 2 1_555 C O4 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DA 3 D DA 3 1_555 C N3 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N6 DA 3 D DA 3 1_555 C O4 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DA 4 D DA 4 1_555 C N3 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 DA 4 D DA 4 1_555 C O4 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 5 D DA 5 1_555 C N3 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 5 D DA 5 1_555 C O4 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QZE _atom_sites.fract_transf_matrix[1][1] 0.017232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG A 1 601 1 MG MG . F 4 MG A 1 602 2 MG MG . G 5 NA A 1 603 3 NA NA . H 6 DCT A 1 604 1 DCT DCT . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 2 HOH HOH . I 7 HOH A 3 703 3 HOH HOH . I 7 HOH A 4 704 4 HOH HOH . I 7 HOH A 5 705 5 HOH HOH . I 7 HOH A 6 706 6 HOH HOH . I 7 HOH A 7 707 9 HOH HOH . I 7 HOH A 8 708 10 HOH HOH . I 7 HOH A 9 709 11 HOH HOH . I 7 HOH A 10 710 12 HOH HOH . I 7 HOH A 11 711 13 HOH HOH . I 7 HOH A 12 712 14 HOH HOH . I 7 HOH A 13 713 15 HOH HOH . I 7 HOH A 14 714 16 HOH HOH . I 7 HOH A 15 715 17 HOH HOH . I 7 HOH A 16 716 18 HOH HOH . I 7 HOH A 17 717 19 HOH HOH . I 7 HOH A 18 718 20 HOH HOH . I 7 HOH A 19 719 22 HOH HOH . I 7 HOH A 20 720 23 HOH HOH . I 7 HOH A 21 721 24 HOH HOH . I 7 HOH A 22 722 25 HOH HOH . I 7 HOH A 23 723 26 HOH HOH . I 7 HOH A 24 724 27 HOH HOH . I 7 HOH A 25 725 28 HOH HOH . I 7 HOH A 26 726 29 HOH HOH . I 7 HOH A 27 727 30 HOH HOH . I 7 HOH A 28 728 31 HOH HOH . I 7 HOH A 29 729 32 HOH HOH . I 7 HOH A 30 730 33 HOH HOH . I 7 HOH A 31 731 34 HOH HOH . I 7 HOH A 32 732 36 HOH HOH . I 7 HOH A 33 733 37 HOH HOH . I 7 HOH A 34 734 39 HOH HOH . I 7 HOH A 35 735 40 HOH HOH . I 7 HOH A 36 736 41 HOH HOH . I 7 HOH A 37 737 43 HOH HOH . I 7 HOH A 38 738 45 HOH HOH . I 7 HOH A 39 739 46 HOH HOH . I 7 HOH A 40 740 47 HOH HOH . I 7 HOH A 41 741 48 HOH HOH . I 7 HOH A 42 742 49 HOH HOH . I 7 HOH A 43 743 50 HOH HOH . I 7 HOH A 44 744 51 HOH HOH . I 7 HOH A 45 745 52 HOH HOH . I 7 HOH A 46 746 53 HOH HOH . I 7 HOH A 47 747 54 HOH HOH . I 7 HOH A 48 748 55 HOH HOH . I 7 HOH A 49 749 57 HOH HOH . I 7 HOH A 50 750 58 HOH HOH . I 7 HOH A 51 751 60 HOH HOH . I 7 HOH A 52 752 61 HOH HOH . I 7 HOH A 53 753 62 HOH HOH . I 7 HOH A 54 754 64 HOH HOH . I 7 HOH A 55 755 65 HOH HOH . I 7 HOH A 56 756 66 HOH HOH . I 7 HOH A 57 757 67 HOH HOH . I 7 HOH A 58 758 68 HOH HOH . I 7 HOH A 59 759 69 HOH HOH . I 7 HOH A 60 760 70 HOH HOH . I 7 HOH A 61 761 71 HOH HOH . I 7 HOH A 62 762 72 HOH HOH . I 7 HOH A 63 763 74 HOH HOH . I 7 HOH A 64 764 75 HOH HOH . I 7 HOH A 65 765 76 HOH HOH . I 7 HOH A 66 766 77 HOH HOH . I 7 HOH A 67 767 78 HOH HOH . I 7 HOH A 68 768 79 HOH HOH . I 7 HOH A 69 769 80 HOH HOH . I 7 HOH A 70 770 83 HOH HOH . I 7 HOH A 71 771 84 HOH HOH . I 7 HOH A 72 772 85 HOH HOH . I 7 HOH A 73 773 86 HOH HOH . I 7 HOH A 74 774 87 HOH HOH . I 7 HOH A 75 775 89 HOH HOH . I 7 HOH A 76 776 90 HOH HOH . I 7 HOH A 77 777 91 HOH HOH . I 7 HOH A 78 778 93 HOH HOH . I 7 HOH A 79 779 96 HOH HOH . I 7 HOH A 80 780 97 HOH HOH . I 7 HOH A 81 781 99 HOH HOH . I 7 HOH A 82 782 101 HOH HOH . I 7 HOH A 83 783 102 HOH HOH . I 7 HOH A 84 784 103 HOH HOH . I 7 HOH A 85 785 104 HOH HOH . I 7 HOH A 86 786 105 HOH HOH . I 7 HOH A 87 787 106 HOH HOH . I 7 HOH A 88 788 107 HOH HOH . I 7 HOH A 89 789 111 HOH HOH . I 7 HOH A 90 790 113 HOH HOH . I 7 HOH A 91 791 114 HOH HOH . I 7 HOH A 92 792 115 HOH HOH . I 7 HOH A 93 793 116 HOH HOH . I 7 HOH A 94 794 119 HOH HOH . I 7 HOH A 95 795 120 HOH HOH . I 7 HOH A 96 796 121 HOH HOH . I 7 HOH A 97 797 122 HOH HOH . I 7 HOH A 98 798 123 HOH HOH . I 7 HOH A 99 799 124 HOH HOH . I 7 HOH A 100 800 125 HOH HOH . I 7 HOH A 101 801 126 HOH HOH . I 7 HOH A 102 802 130 HOH HOH . I 7 HOH A 103 803 131 HOH HOH . I 7 HOH A 104 804 132 HOH HOH . I 7 HOH A 105 805 133 HOH HOH . I 7 HOH A 106 806 134 HOH HOH . I 7 HOH A 107 807 135 HOH HOH . I 7 HOH A 108 808 136 HOH HOH . I 7 HOH A 109 809 137 HOH HOH . I 7 HOH A 110 810 138 HOH HOH . I 7 HOH A 111 811 139 HOH HOH . I 7 HOH A 112 812 140 HOH HOH . I 7 HOH A 113 813 141 HOH HOH . I 7 HOH A 114 814 142 HOH HOH . I 7 HOH A 115 815 143 HOH HOH . I 7 HOH A 116 816 144 HOH HOH . I 7 HOH A 117 817 145 HOH HOH . I 7 HOH A 118 818 146 HOH HOH . I 7 HOH A 119 819 147 HOH HOH . I 7 HOH A 120 820 148 HOH HOH . I 7 HOH A 121 821 149 HOH HOH . I 7 HOH A 122 822 150 HOH HOH . I 7 HOH A 123 823 151 HOH HOH . I 7 HOH A 124 824 152 HOH HOH . I 7 HOH A 125 825 154 HOH HOH . I 7 HOH A 126 826 155 HOH HOH . I 7 HOH A 127 827 156 HOH HOH . I 7 HOH A 128 828 157 HOH HOH . I 7 HOH A 129 829 158 HOH HOH . I 7 HOH A 130 830 160 HOH HOH . I 7 HOH A 131 831 161 HOH HOH . I 7 HOH A 132 832 162 HOH HOH . I 7 HOH A 133 833 163 HOH HOH . I 7 HOH A 134 834 164 HOH HOH . I 7 HOH A 135 835 165 HOH HOH . I 7 HOH A 136 836 166 HOH HOH . I 7 HOH A 137 837 167 HOH HOH . I 7 HOH A 138 838 169 HOH HOH . I 7 HOH A 139 839 171 HOH HOH . I 7 HOH A 140 840 172 HOH HOH . I 7 HOH A 141 841 173 HOH HOH . I 7 HOH A 142 842 174 HOH HOH . I 7 HOH A 143 843 176 HOH HOH . I 7 HOH A 144 844 177 HOH HOH . I 7 HOH A 145 845 178 HOH HOH . I 7 HOH A 146 846 179 HOH HOH . I 7 HOH A 147 847 180 HOH HOH . I 7 HOH A 148 848 185 HOH HOH . I 7 HOH A 149 849 187 HOH HOH . I 7 HOH A 150 850 189 HOH HOH . I 7 HOH A 151 851 190 HOH HOH . I 7 HOH A 152 852 191 HOH HOH . I 7 HOH A 153 853 193 HOH HOH . I 7 HOH A 154 854 194 HOH HOH . I 7 HOH A 155 855 195 HOH HOH . I 7 HOH A 156 856 196 HOH HOH . I 7 HOH A 157 857 197 HOH HOH . I 7 HOH A 158 858 198 HOH HOH . I 7 HOH A 159 859 199 HOH HOH . I 7 HOH A 160 860 201 HOH HOH . I 7 HOH A 161 861 202 HOH HOH . I 7 HOH A 162 862 203 HOH HOH . I 7 HOH A 163 863 204 HOH HOH . I 7 HOH A 164 864 205 HOH HOH . I 7 HOH A 165 865 206 HOH HOH . I 7 HOH A 166 866 207 HOH HOH . I 7 HOH A 167 867 208 HOH HOH . I 7 HOH A 168 868 211 HOH HOH . I 7 HOH A 169 869 213 HOH HOH . J 7 HOH D 1 101 8 HOH HOH . J 7 HOH D 2 102 21 HOH HOH . J 7 HOH D 3 103 35 HOH HOH . J 7 HOH D 4 104 38 HOH HOH . J 7 HOH D 5 105 56 HOH HOH . J 7 HOH D 6 106 63 HOH HOH . J 7 HOH D 7 107 82 HOH HOH . J 7 HOH D 8 108 92 HOH HOH . J 7 HOH D 9 109 95 HOH HOH . J 7 HOH D 10 110 98 HOH HOH . J 7 HOH D 11 111 109 HOH HOH . J 7 HOH D 12 112 112 HOH HOH . J 7 HOH D 13 113 117 HOH HOH . J 7 HOH D 14 114 118 HOH HOH . J 7 HOH D 15 115 159 HOH HOH . J 7 HOH D 16 116 168 HOH HOH . J 7 HOH D 17 117 170 HOH HOH . J 7 HOH D 18 118 186 HOH HOH . J 7 HOH D 19 119 200 HOH HOH . J 7 HOH D 20 120 209 HOH HOH . K 7 HOH T 1 101 7 HOH HOH . K 7 HOH T 2 102 44 HOH HOH . K 7 HOH T 3 103 59 HOH HOH . K 7 HOH T 4 104 73 HOH HOH . K 7 HOH T 5 105 81 HOH HOH . K 7 HOH T 6 106 88 HOH HOH . K 7 HOH T 7 107 108 HOH HOH . K 7 HOH T 8 108 110 HOH HOH . K 7 HOH T 9 109 127 HOH HOH . K 7 HOH T 10 110 128 HOH HOH . K 7 HOH T 11 111 129 HOH HOH . K 7 HOH T 12 112 153 HOH HOH . K 7 HOH T 13 113 175 HOH HOH . K 7 HOH T 14 114 181 HOH HOH . K 7 HOH T 15 115 182 HOH HOH . K 7 HOH T 16 116 183 HOH HOH . K 7 HOH T 17 117 184 HOH HOH . K 7 HOH T 18 118 188 HOH HOH . K 7 HOH T 19 119 192 HOH HOH . K 7 HOH T 20 120 210 HOH HOH . L 7 HOH U 1 101 42 HOH HOH . L 7 HOH U 2 102 94 HOH HOH . L 7 HOH U 3 103 100 HOH HOH . L 7 HOH U 4 104 212 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.456 _atom_site.Cartn_y -6.47 _atom_site.Cartn_z 39.39 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.08 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #