data_4QZF # _model_server_result.job_id vFmudjROanMctvMro-YXgQ _model_server_result.datetime_utc '2024-11-22 06:48:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 4QZF # _exptl.entry_id 4QZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.78 _cell.angle_gamma 90 _cell.entry_id 4QZF _cell.length_a 56.426 _cell.length_b 74.955 _cell.length_c 125.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 143 A THR 253 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 A O VAL 145 A VAL 255 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 A O VAL 148 A VAL 258 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc5 A OD2 ASP 233 A ASP 343 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A OD1 ASP 235 A ASP 345 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 A OD2 ASP 324 A ASP 434 1_555 F MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 E MG MG . A MG 601 1_555 H O2G DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 E MG MG . A MG 601 1_555 H O2A DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 E MG MG . A MG 601 1_555 H O2B DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 F MG MG . A MG 602 1_555 H O2A DCT . A DCT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc12 G NA NA . A NA 603 1_555 D OP1 DA 5 U DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 D DA 1 1_555 C N3 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 D DA 1 1_555 C O4 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 2 D DA 2 1_555 C N3 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 2 D DA 2 1_555 C O4 DT 4 T DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DA 3 D DA 3 1_555 C N3 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N6 DA 3 D DA 3 1_555 C O4 DT 3 T DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DA 4 D DA 4 1_555 C N3 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 DA 4 D DA 4 1_555 C O4 DT 2 T DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 5 D DA 5 1_555 C N3 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 5 D DA 5 1_555 C O4 DT 1 T DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DC MISPAIR' hydrog11 C N3 DA 7 T DA 7 1_555 D N4 DC 6 U DC 6 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QZF _atom_sites.fract_transf_matrix[1][1] 0.017722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG A 1 601 1 MG MG . F 4 MG A 1 602 2 MG MG . G 5 NA A 1 603 3 NA NA . H 6 DCT A 1 604 1 DCT DCT . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 4 HOH HOH . I 7 HOH A 3 703 5 HOH HOH . I 7 HOH A 4 704 6 HOH HOH . I 7 HOH A 5 705 7 HOH HOH . I 7 HOH A 6 706 9 HOH HOH . I 7 HOH A 7 707 10 HOH HOH . I 7 HOH A 8 708 11 HOH HOH . I 7 HOH A 9 709 12 HOH HOH . I 7 HOH A 10 710 13 HOH HOH . I 7 HOH A 11 711 14 HOH HOH . I 7 HOH A 12 712 15 HOH HOH . I 7 HOH A 13 713 16 HOH HOH . I 7 HOH A 14 714 17 HOH HOH . I 7 HOH A 15 715 18 HOH HOH . I 7 HOH A 16 716 19 HOH HOH . I 7 HOH A 17 717 20 HOH HOH . I 7 HOH A 18 718 21 HOH HOH . I 7 HOH A 19 719 22 HOH HOH . I 7 HOH A 20 720 23 HOH HOH . I 7 HOH A 21 721 24 HOH HOH . I 7 HOH A 22 722 25 HOH HOH . I 7 HOH A 23 723 27 HOH HOH . I 7 HOH A 24 724 28 HOH HOH . I 7 HOH A 25 725 29 HOH HOH . I 7 HOH A 26 726 30 HOH HOH . I 7 HOH A 27 727 31 HOH HOH . I 7 HOH A 28 728 32 HOH HOH . I 7 HOH A 29 729 34 HOH HOH . I 7 HOH A 30 730 35 HOH HOH . I 7 HOH A 31 731 36 HOH HOH . I 7 HOH A 32 732 37 HOH HOH . I 7 HOH A 33 733 38 HOH HOH . I 7 HOH A 34 734 39 HOH HOH . I 7 HOH A 35 735 40 HOH HOH . I 7 HOH A 36 736 41 HOH HOH . I 7 HOH A 37 737 42 HOH HOH . I 7 HOH A 38 738 44 HOH HOH . I 7 HOH A 39 739 45 HOH HOH . I 7 HOH A 40 740 46 HOH HOH . I 7 HOH A 41 741 47 HOH HOH . I 7 HOH A 42 742 48 HOH HOH . I 7 HOH A 43 743 49 HOH HOH . I 7 HOH A 44 744 50 HOH HOH . I 7 HOH A 45 745 51 HOH HOH . I 7 HOH A 46 746 53 HOH HOH . I 7 HOH A 47 747 54 HOH HOH . I 7 HOH A 48 748 55 HOH HOH . I 7 HOH A 49 749 56 HOH HOH . I 7 HOH A 50 750 57 HOH HOH . I 7 HOH A 51 751 58 HOH HOH . I 7 HOH A 52 752 59 HOH HOH . I 7 HOH A 53 753 60 HOH HOH . I 7 HOH A 54 754 62 HOH HOH . I 7 HOH A 55 755 63 HOH HOH . I 7 HOH A 56 756 65 HOH HOH . I 7 HOH A 57 757 66 HOH HOH . I 7 HOH A 58 758 68 HOH HOH . I 7 HOH A 59 759 69 HOH HOH . I 7 HOH A 60 760 70 HOH HOH . I 7 HOH A 61 761 71 HOH HOH . I 7 HOH A 62 762 72 HOH HOH . I 7 HOH A 63 763 73 HOH HOH . I 7 HOH A 64 764 74 HOH HOH . I 7 HOH A 65 765 75 HOH HOH . I 7 HOH A 66 766 76 HOH HOH . I 7 HOH A 67 767 77 HOH HOH . I 7 HOH A 68 768 78 HOH HOH . I 7 HOH A 69 769 79 HOH HOH . I 7 HOH A 70 770 80 HOH HOH . I 7 HOH A 71 771 81 HOH HOH . I 7 HOH A 72 772 82 HOH HOH . I 7 HOH A 73 773 83 HOH HOH . I 7 HOH A 74 774 84 HOH HOH . I 7 HOH A 75 775 87 HOH HOH . I 7 HOH A 76 776 88 HOH HOH . I 7 HOH A 77 777 89 HOH HOH . I 7 HOH A 78 778 90 HOH HOH . I 7 HOH A 79 779 91 HOH HOH . I 7 HOH A 80 780 92 HOH HOH . I 7 HOH A 81 781 94 HOH HOH . I 7 HOH A 82 782 95 HOH HOH . I 7 HOH A 83 783 96 HOH HOH . I 7 HOH A 84 784 97 HOH HOH . I 7 HOH A 85 785 98 HOH HOH . I 7 HOH A 86 786 99 HOH HOH . J 7 HOH D 1 101 26 HOH HOH . J 7 HOH D 2 102 43 HOH HOH . J 7 HOH D 3 103 52 HOH HOH . J 7 HOH D 4 104 67 HOH HOH . K 7 HOH T 1 101 2 HOH HOH . K 7 HOH T 2 102 3 HOH HOH . K 7 HOH T 3 103 8 HOH HOH . K 7 HOH T 4 104 33 HOH HOH . K 7 HOH T 5 105 61 HOH HOH . K 7 HOH T 6 106 64 HOH HOH . K 7 HOH T 7 107 85 HOH HOH . L 7 HOH U 1 101 86 HOH HOH . L 7 HOH U 2 102 93 HOH HOH . L 7 HOH U 3 103 100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 10.341 _atom_site.Cartn_y 5.999 _atom_site.Cartn_z 38.237 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.95 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #