data_4R0M # _model_server_result.job_id GIySK13UbowV4lIEwyhIlA _model_server_result.datetime_utc '2024-11-30 07:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4R0M # _exptl.entry_id 4R0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.395 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R0M _cell.length_a 120.71 _cell.length_b 120.71 _cell.length_c 262.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 187 B GLY 187 1_555 A N MSE 188 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 188 B MSE 188 1_555 A N PRO 189 B PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C SER 201 B SER 201 1_555 A N MSE 202 B MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C MSE 202 B MSE 202 1_555 A N THR 203 B THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale5 A C VAL 208 B VAL 208 1_555 A N MSE 209 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 209 B MSE 209 1_555 A N ASN 210 B ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C TRP 221 B TRP 221 1_555 A N MSE 222 B MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 A C MSE 222 B MSE 222 1_555 A N PRO 223 B PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale9 A C ILE 235 B ILE 235 1_555 A N MSE 236 B MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 236 B MSE 236 1_555 A N ALA 237 B ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C PRO 248 B PRO 248 1_555 A N MSE 249 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 249 B MSE 249 1_555 A N GLU 250 B GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C SER 297 B SER 297 1_555 A N MSE 298 B MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 298 B MSE 298 1_555 A N LYS 299 B LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C GLY 335 B GLY 335 1_555 A N MSE 336 B MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 336 B MSE 336 1_555 A N THR 337 B THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C GLY 187 A GLY 187 1_555 B N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MSE 188 A MSE 188 1_555 B N PRO 189 A PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale19 B C SER 201 A SER 201 1_555 B N MSE 202 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale20 B C MSE 202 A MSE 202 1_555 B N THR 203 A THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale21 B C VAL 208 A VAL 208 1_555 B N MSE 209 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale22 B C MSE 209 A MSE 209 1_555 B N ASN 210 A ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale23 B C TRP 221 A TRP 221 1_555 B N MSE 222 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale24 B C MSE 222 A MSE 222 1_555 B N PRO 223 A PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale25 B C ILE 235 A ILE 235 1_555 B N MSE 236 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C MSE 236 A MSE 236 1_555 B N ALA 237 A ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 B C PRO 248 A PRO 248 1_555 B N MSE 249 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 B C MSE 249 A MSE 249 1_555 B N GLU 250 A GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 B C SER 297 A SER 297 1_555 B N MSE 298 A MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale30 B C MSE 298 A MSE 298 1_555 B N LYS 299 A LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 B C GLY 335 A GLY 335 1_555 B N MSE 336 A MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale32 B C MSE 336 A MSE 336 1_555 B N THR 337 A THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 B C GLU 626 A GLU 626 1_555 B N MSE 627 A MSE 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale34 B C MSE 627 A MSE 627 1_555 B N PHE 628 A PHE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C19 H23 N6 O8 P' _chem_comp.formula_weight 494.395 _chem_comp.id FA5 _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O FA5 doub 83 n n C CA FA5 sing 84 n n C OP3 FA5 sing 85 n n CA N FA5 sing 86 n n CA CB FA5 sing 87 n n CA HA FA5 sing 88 n n N HN1 FA5 sing 89 n n N HN2 FA5 sing 90 n n CB CG FA5 sing 91 n n CB HB1 FA5 sing 92 n n CB HB2 FA5 sing 93 n n CG CD1 FA5 doub 94 n y CG CD2 FA5 sing 95 n y CD1 CE1 FA5 sing 96 n y CD1 HD1 FA5 sing 97 n n CD2 CE2 FA5 doub 98 n y CD2 HD2 FA5 sing 99 n n CE1 CZ FA5 doub 100 n y CE1 HE1 FA5 sing 101 n n CE2 CZ FA5 sing 102 n y CE2 HE2 FA5 sing 103 n n CZ HZ FA5 sing 104 n n P OP1 FA5 doub 105 n n P OP2 FA5 sing 106 n n P OP3 FA5 sing 107 n n P O5' FA5 sing 108 n n OP2 HOP2 FA5 sing 109 n n O5' C5' FA5 sing 110 n n C5' C4' FA5 sing 111 n n C5' H5' FA5 sing 112 n n C5' "H5''" FA5 sing 113 n n C4' O4' FA5 sing 114 n n C4' C3' FA5 sing 115 n n C4' H4' FA5 sing 116 n n O4' C1' FA5 sing 117 n n C3' O3' FA5 sing 118 n n C3' C2' FA5 sing 119 n n C3' H3' FA5 sing 120 n n O3' "HO'3" FA5 sing 121 n n C2' O2' FA5 sing 122 n n C2' C1' FA5 sing 123 n n C2' H2' FA5 sing 124 n n O2' HO2' FA5 sing 125 n n C1' N9 FA5 sing 126 n n C1' H1' FA5 sing 127 n n N9 C8 FA5 sing 128 n y N9 C4 FA5 sing 129 n y C8 N7 FA5 doub 130 n y C8 H8 FA5 sing 131 n n N7 C5 FA5 sing 132 n y C5 C6 FA5 sing 133 n y C5 C4 FA5 doub 134 n y C6 N6 FA5 sing 135 n n C6 N1 FA5 doub 136 n y N6 H61 FA5 sing 137 n n N6 H62 FA5 sing 138 n n N1 C2 FA5 sing 139 n y C2 N3 FA5 doub 140 n y C2 H2 FA5 sing 141 n n N3 C4 FA5 sing 142 n y # _atom_sites.entry_id 4R0M _atom_sites.fract_transf_matrix[1][1] 0.008284 _atom_sites.fract_transf_matrix[1][2] 0.004783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FA5 B 1 701 701 FA5 FA5 . D 2 FA5 A 1 701 701 FA5 FA5 . E 3 HOH B 1 801 3 HOH HOH . E 3 HOH B 2 802 4 HOH HOH . E 3 HOH B 3 803 6 HOH HOH . E 3 HOH B 4 804 7 HOH HOH . E 3 HOH B 5 805 8 HOH HOH . E 3 HOH B 6 806 9 HOH HOH . E 3 HOH B 7 807 11 HOH HOH . E 3 HOH B 8 808 12 HOH HOH . E 3 HOH B 9 809 14 HOH HOH . E 3 HOH B 10 810 15 HOH HOH . E 3 HOH B 11 811 16 HOH HOH . E 3 HOH B 12 812 17 HOH HOH . E 3 HOH B 13 813 20 HOH HOH . E 3 HOH B 14 814 21 HOH HOH . E 3 HOH B 15 815 22 HOH HOH . E 3 HOH B 16 816 26 HOH HOH . F 3 HOH A 1 801 1 HOH HOH . F 3 HOH A 2 802 2 HOH HOH . F 3 HOH A 3 803 5 HOH HOH . F 3 HOH A 4 804 10 HOH HOH . F 3 HOH A 5 805 13 HOH HOH . F 3 HOH A 6 806 18 HOH HOH . F 3 HOH A 7 807 19 HOH HOH . F 3 HOH A 8 808 23 HOH HOH . F 3 HOH A 9 809 24 HOH HOH . F 3 HOH A 10 810 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FA5 . . . C 2 42.722 20.225 -35.403 0.6 33.9 ? C FA5 701 B 1 HETATM 2 O O FA5 . . . C 2 42.528 19.768 -36.523 0.6 34.65 ? O FA5 701 B 1 HETATM 3 C CA FA5 . . . C 2 42.228 19.482 -34.188 1 34.42 ? CA FA5 701 B 1 HETATM 4 N N FA5 . . . C 2 40.842 19.195 -34.47 1 36.01 ? N FA5 701 B 1 HETATM 5 C CB FA5 . . . C 2 42.974 18.158 -33.968 1 35.54 ? CB FA5 701 B 1 HETATM 6 C CG FA5 . . . C 2 42.5 17.209 -32.86 1 35.3 ? CG FA5 701 B 1 HETATM 7 C CD1 FA5 . . . C 2 41.247 17.284 -32.25 1 35.37 ? CD1 FA5 701 B 1 HETATM 8 C CD2 FA5 . . . C 2 43.367 16.192 -32.438 1 35.43 ? CD2 FA5 701 B 1 HETATM 9 C CE1 FA5 . . . C 2 40.879 16.379 -31.246 1 35.06 ? CE1 FA5 701 B 1 HETATM 10 C CE2 FA5 . . . C 2 43.008 15.278 -31.441 1 34.98 ? CE2 FA5 701 B 1 HETATM 11 C CZ FA5 . . . C 2 41.755 15.373 -30.839 1 35.11 ? CZ FA5 701 B 1 HETATM 12 P P FA5 . . . C 2 43.08 22.793 -36.224 1 31.13 ? P FA5 701 B 1 HETATM 13 O OP1 FA5 . . . C 2 43.952 22.734 -37.45 1 32.33 ? OP1 FA5 701 B 1 HETATM 14 O OP2 FA5 . . . C 2 43.131 24.025 -35.356 1 31.12 ? OP2 FA5 701 B 1 HETATM 15 O OP3 FA5 . . . C 2 43.412 21.509 -35.287 0.6 32.75 ? OP3 FA5 701 B 1 HETATM 16 O O5' FA5 . . . C 2 41.565 22.591 -36.737 1 31.02 ? O5' FA5 701 B 1 HETATM 17 C C5' FA5 . . . C 2 40.441 22.654 -35.863 1 30.16 ? C5' FA5 701 B 1 HETATM 18 C C4' FA5 . . . C 2 39.181 22.494 -36.7 1 29.9 ? C4' FA5 701 B 1 HETATM 19 O O4' FA5 . . . C 2 39.088 21.192 -37.291 1 29.53 ? O4' FA5 701 B 1 HETATM 20 C C3' FA5 . . . C 2 37.91 22.636 -35.888 1 29.97 ? C3' FA5 701 B 1 HETATM 21 O O3' FA5 . . . C 2 37.558 24.002 -35.676 1 30.72 ? O3' FA5 701 B 1 HETATM 22 C C2' FA5 . . . C 2 36.903 21.918 -36.757 1 30.42 ? C2' FA5 701 B 1 HETATM 23 O O2' FA5 . . . C 2 36.421 22.786 -37.789 1 30.32 ? O2' FA5 701 B 1 HETATM 24 C C1' FA5 . . . C 2 37.713 20.812 -37.4 1 30.19 ? C1' FA5 701 B 1 HETATM 25 N N9 FA5 . . . C 2 37.46 19.547 -36.663 1 31.15 ? N9 FA5 701 B 1 HETATM 26 C C8 FA5 . . . C 2 38.284 18.986 -35.759 1 31.08 ? C8 FA5 701 B 1 HETATM 27 N N7 FA5 . . . C 2 37.772 17.832 -35.265 1 31.43 ? N7 FA5 701 B 1 HETATM 28 C C5 FA5 . . . C 2 36.579 17.639 -35.855 1 31.59 ? C5 FA5 701 B 1 HETATM 29 C C6 FA5 . . . C 2 35.504 16.617 -35.794 1 31.76 ? C6 FA5 701 B 1 HETATM 30 N N6 FA5 . . . C 2 35.604 15.542 -34.979 1 32.13 ? N6 FA5 701 B 1 HETATM 31 N N1 FA5 . . . C 2 34.414 16.793 -36.579 1 31.88 ? N1 FA5 701 B 1 HETATM 32 C C2 FA5 . . . C 2 34.294 17.861 -37.395 1 31.82 ? C2 FA5 701 B 1 HETATM 33 N N3 FA5 . . . C 2 35.231 18.822 -37.506 1 31.55 ? N3 FA5 701 B 1 HETATM 34 C C4 FA5 . . . C 2 36.375 18.773 -36.774 1 31.51 ? C4 FA5 701 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #