data_4R0M # _model_server_result.job_id 7H2hHbVuF4P4YPFlSlYd3A _model_server_result.datetime_utc '2024-10-13 01:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4R0M # _exptl.entry_id 4R0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.395 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R0M _cell.length_a 120.71 _cell.length_b 120.71 _cell.length_c 262.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 187 B GLY 187 1_555 A N MSE 188 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 188 B MSE 188 1_555 A N PRO 189 B PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C SER 201 B SER 201 1_555 A N MSE 202 B MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C MSE 202 B MSE 202 1_555 A N THR 203 B THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale5 A C VAL 208 B VAL 208 1_555 A N MSE 209 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 209 B MSE 209 1_555 A N ASN 210 B ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C TRP 221 B TRP 221 1_555 A N MSE 222 B MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 A C MSE 222 B MSE 222 1_555 A N PRO 223 B PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale9 A C ILE 235 B ILE 235 1_555 A N MSE 236 B MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 236 B MSE 236 1_555 A N ALA 237 B ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C PRO 248 B PRO 248 1_555 A N MSE 249 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 249 B MSE 249 1_555 A N GLU 250 B GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C SER 297 B SER 297 1_555 A N MSE 298 B MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 298 B MSE 298 1_555 A N LYS 299 B LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C GLY 335 B GLY 335 1_555 A N MSE 336 B MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 336 B MSE 336 1_555 A N THR 337 B THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C GLY 187 A GLY 187 1_555 B N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MSE 188 A MSE 188 1_555 B N PRO 189 A PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale19 B C SER 201 A SER 201 1_555 B N MSE 202 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale20 B C MSE 202 A MSE 202 1_555 B N THR 203 A THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale21 B C VAL 208 A VAL 208 1_555 B N MSE 209 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale22 B C MSE 209 A MSE 209 1_555 B N ASN 210 A ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale23 B C TRP 221 A TRP 221 1_555 B N MSE 222 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale24 B C MSE 222 A MSE 222 1_555 B N PRO 223 A PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale25 B C ILE 235 A ILE 235 1_555 B N MSE 236 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C MSE 236 A MSE 236 1_555 B N ALA 237 A ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 B C PRO 248 A PRO 248 1_555 B N MSE 249 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 B C MSE 249 A MSE 249 1_555 B N GLU 250 A GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 B C SER 297 A SER 297 1_555 B N MSE 298 A MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale30 B C MSE 298 A MSE 298 1_555 B N LYS 299 A LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 B C GLY 335 A GLY 335 1_555 B N MSE 336 A MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale32 B C MSE 336 A MSE 336 1_555 B N THR 337 A THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 B C GLU 626 A GLU 626 1_555 B N MSE 627 A MSE 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale34 B C MSE 627 A MSE 627 1_555 B N PHE 628 A PHE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C19 H23 N6 O8 P' _chem_comp.formula_weight 494.395 _chem_comp.id FA5 _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R0M _atom_sites.fract_transf_matrix[1][1] 0.008284 _atom_sites.fract_transf_matrix[1][2] 0.004783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FA5 B 1 701 701 FA5 FA5 . D 2 FA5 A 1 701 701 FA5 FA5 . E 3 HOH B 1 801 3 HOH HOH . E 3 HOH B 2 802 4 HOH HOH . E 3 HOH B 3 803 6 HOH HOH . E 3 HOH B 4 804 7 HOH HOH . E 3 HOH B 5 805 8 HOH HOH . E 3 HOH B 6 806 9 HOH HOH . E 3 HOH B 7 807 11 HOH HOH . E 3 HOH B 8 808 12 HOH HOH . E 3 HOH B 9 809 14 HOH HOH . E 3 HOH B 10 810 15 HOH HOH . E 3 HOH B 11 811 16 HOH HOH . E 3 HOH B 12 812 17 HOH HOH . E 3 HOH B 13 813 20 HOH HOH . E 3 HOH B 14 814 21 HOH HOH . E 3 HOH B 15 815 22 HOH HOH . E 3 HOH B 16 816 26 HOH HOH . F 3 HOH A 1 801 1 HOH HOH . F 3 HOH A 2 802 2 HOH HOH . F 3 HOH A 3 803 5 HOH HOH . F 3 HOH A 4 804 10 HOH HOH . F 3 HOH A 5 805 13 HOH HOH . F 3 HOH A 6 806 18 HOH HOH . F 3 HOH A 7 807 19 HOH HOH . F 3 HOH A 8 808 23 HOH HOH . F 3 HOH A 9 809 24 HOH HOH . F 3 HOH A 10 810 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FA5 . . . D 2 40.85 -28.977 -12.43 0.6 33.1 ? C FA5 701 A 1 HETATM 2 O O FA5 . . . D 2 40.264 -28.513 -11.464 0.6 33.87 ? O FA5 701 A 1 HETATM 3 C CA FA5 . . . D 2 40.757 -28.278 -13.763 1 33.81 ? CA FA5 701 A 1 HETATM 4 N N FA5 . . . D 2 39.343 -28.175 -14.005 1 36.17 ? N FA5 701 A 1 HETATM 5 C CB FA5 . . . D 2 41.327 -26.851 -13.728 1 34.87 ? CB FA5 701 A 1 HETATM 6 C CG FA5 . . . D 2 41.147 -25.95 -14.956 0.6 34.62 ? CG FA5 701 A 1 HETATM 7 C CD1 FA5 . . . D 2 40.037 -26.007 -15.801 1 34.97 ? CD1 FA5 701 A 1 HETATM 8 C CD2 FA5 . . . D 2 42.131 -24.994 -15.24 0.6 34.57 ? CD2 FA5 701 A 1 HETATM 9 C CE1 FA5 . . . D 2 39.924 -25.153 -16.909 1 34.7 ? CE1 FA5 701 A 1 HETATM 10 C CE2 FA5 . . . D 2 42.025 -24.131 -16.337 1 34.72 ? CE2 FA5 701 A 1 HETATM 11 C CZ FA5 . . . D 2 40.914 -24.208 -17.18 1 34.8 ? CZ FA5 701 A 1 HETATM 12 P P FA5 . . . D 2 41.067 -31.52 -11.442 1 29.95 ? P FA5 701 A 1 HETATM 13 O OP1 FA5 . . . D 2 41.693 -31.532 -10.072 1 31.36 ? OP1 FA5 701 A 1 HETATM 14 O OP2 FA5 . . . D 2 41.243 -32.728 -12.328 1 30.48 ? OP2 FA5 701 A 1 HETATM 15 O OP3 FA5 . . . D 2 41.61 -30.216 -12.249 0.6 31.75 ? OP3 FA5 701 A 1 HETATM 16 O O5' FA5 . . . D 2 39.492 -31.291 -11.249 1 29.7 ? O5' FA5 701 A 1 HETATM 17 C C5' FA5 . . . D 2 38.594 -31.56 -12.316 1 28.94 ? C5' FA5 701 A 1 HETATM 18 C C4' FA5 . . . D 2 37.183 -31.473 -11.777 1 28.35 ? C4' FA5 701 A 1 HETATM 19 O O4' FA5 . . . D 2 36.892 -30.16 -11.296 1 28.27 ? O4' FA5 701 A 1 HETATM 20 C C3' FA5 . . . D 2 36.153 -31.724 -12.856 1 28.38 ? C3' FA5 701 A 1 HETATM 21 O O3' FA5 . . . D 2 35.946 -33.122 -13.069 1 28.66 ? O3' FA5 701 A 1 HETATM 22 C C2' FA5 . . . D 2 34.932 -31.034 -12.301 1 28.3 ? C2' FA5 701 A 1 HETATM 23 O O2' FA5 . . . D 2 34.255 -31.915 -11.401 1 27.8 ? O2' FA5 701 A 1 HETATM 24 C C1' FA5 . . . D 2 35.508 -29.867 -11.52 1 28.43 ? C1' FA5 701 A 1 HETATM 25 N N9 FA5 . . . D 2 35.359 -28.62 -12.314 1 29.1 ? N9 FA5 701 A 1 HETATM 26 C C8 FA5 . . . D 2 36.319 -28.02 -13.047 1 29.06 ? C8 FA5 701 A 1 HETATM 27 N N7 FA5 . . . D 2 35.857 -26.894 -13.645 1 28.72 ? N7 FA5 701 A 1 HETATM 28 C C5 FA5 . . . D 2 34.564 -26.76 -13.295 1 29.13 ? C5 FA5 701 A 1 HETATM 29 C C6 FA5 . . . D 2 33.468 -25.797 -13.573 1 29.26 ? C6 FA5 701 A 1 HETATM 30 N N6 FA5 . . . D 2 33.666 -24.719 -14.367 1 28.97 ? N6 FA5 701 A 1 HETATM 31 N N1 FA5 . . . D 2 32.259 -26.032 -13.006 1 29.63 ? N1 FA5 701 A 1 HETATM 32 C C2 FA5 . . . D 2 32.038 -27.1 -12.212 1 29.31 ? C2 FA5 701 A 1 HETATM 33 N N3 FA5 . . . D 2 32.985 -28.009 -11.918 1 29.22 ? N3 FA5 701 A 1 HETATM 34 C C4 FA5 . . . D 2 34.24 -27.899 -12.419 1 29.01 ? C4 FA5 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #