data_4R0M
#
_model_server_result.job_id            AKoSakoimQIAtkHZ78BUWw 
_model_server_result.datetime_utc      '2024-12-02 11:19:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r0m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4R0M 
#
_exptl.entry_id    4R0M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              494.395 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4R0M 
_cell.length_a            120.71 
_cell.length_b            120.71 
_cell.length_c            262.78 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R0M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 187 B GLY 187 1_555 A N MSE 188 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 188 B MSE 188 1_555 A N PRO 189 B PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale3 A C SER 201 B SER 201 1_555 A N MSE 202 B MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale4 A C MSE 202 B MSE 202 1_555 A N THR 203 B THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale5 A C VAL 208 B VAL 208 1_555 A N MSE 209 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 209 B MSE 209 1_555 A N ASN 210 B ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C TRP 221 B TRP 221 1_555 A N MSE 222 B MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale8 A C MSE 222 B MSE 222 1_555 A N PRO 223 B PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale9 A C ILE 235 B ILE 235 1_555 A N MSE 236 B MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 A C MSE 236 B MSE 236 1_555 A N ALA 237 B ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C PRO 248 B PRO 248 1_555 A N MSE 249 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 A C MSE 249 B MSE 249 1_555 A N GLU 250 B GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 A C SER 297 B SER 297 1_555 A N MSE 298 B MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 A C MSE 298 B MSE 298 1_555 A N LYS 299 B LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 A C GLY 335 B GLY 335 1_555 A N MSE 336 B MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 A C MSE 336 B MSE 336 1_555 A N THR 337 B THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale17 B C GLY 187 A GLY 187 1_555 B N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale18 B C MSE 188 A MSE 188 1_555 B N PRO 189 A PRO 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale19 B C SER 201 A SER 201 1_555 B N MSE 202 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale20 B C MSE 202 A MSE 202 1_555 B N THR 203 A THR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale21 B C VAL 208 A VAL 208 1_555 B N MSE 209 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale22 B C MSE 209 A MSE 209 1_555 B N ASN 210 A ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? 
covale ? covale23 B C TRP 221 A TRP 221 1_555 B N MSE 222 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale24 B C MSE 222 A MSE 222 1_555 B N PRO 223 A PRO 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale25 B C ILE 235 A ILE 235 1_555 B N MSE 236 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale26 B C MSE 236 A MSE 236 1_555 B N ALA 237 A ALA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale27 B C PRO 248 A PRO 248 1_555 B N MSE 249 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale28 B C MSE 249 A MSE 249 1_555 B N GLU 250 A GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale29 B C SER 297 A SER 297 1_555 B N MSE 298 A MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale30 B C MSE 298 A MSE 298 1_555 B N LYS 299 A LYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 B C GLY 335 A GLY 335 1_555 B N MSE 336 A MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale32 B C MSE 336 A MSE 336 1_555 B N THR 337 A THR 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale33 B C GLU 626 A GLU 626 1_555 B N MSE 627 A MSE 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale34 B C MSE 627 A MSE 627 1_555 B N PHE 628 A PHE 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C19 H23 N6 O8 P' 
_chem_comp.formula_weight    494.395 
_chem_comp.id                FA5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O FA5 doub 83 n n 
C CA FA5 sing 84 n n 
C OP3 FA5 sing 85 n n 
CA N FA5 sing 86 n n 
CA CB FA5 sing 87 n n 
CA HA FA5 sing 88 n n 
N HN1 FA5 sing 89 n n 
N HN2 FA5 sing 90 n n 
CB CG FA5 sing 91 n n 
CB HB1 FA5 sing 92 n n 
CB HB2 FA5 sing 93 n n 
CG CD1 FA5 doub 94 n y 
CG CD2 FA5 sing 95 n y 
CD1 CE1 FA5 sing 96 n y 
CD1 HD1 FA5 sing 97 n n 
CD2 CE2 FA5 doub 98 n y 
CD2 HD2 FA5 sing 99 n n 
CE1 CZ FA5 doub 100 n y 
CE1 HE1 FA5 sing 101 n n 
CE2 CZ FA5 sing 102 n y 
CE2 HE2 FA5 sing 103 n n 
CZ HZ FA5 sing 104 n n 
P OP1 FA5 doub 105 n n 
P OP2 FA5 sing 106 n n 
P OP3 FA5 sing 107 n n 
P O5' FA5 sing 108 n n 
OP2 HOP2 FA5 sing 109 n n 
O5' C5' FA5 sing 110 n n 
C5' C4' FA5 sing 111 n n 
C5' H5' FA5 sing 112 n n 
C5' "H5''" FA5 sing 113 n n 
C4' O4' FA5 sing 114 n n 
C4' C3' FA5 sing 115 n n 
C4' H4' FA5 sing 116 n n 
O4' C1' FA5 sing 117 n n 
C3' O3' FA5 sing 118 n n 
C3' C2' FA5 sing 119 n n 
C3' H3' FA5 sing 120 n n 
O3' "HO'3" FA5 sing 121 n n 
C2' O2' FA5 sing 122 n n 
C2' C1' FA5 sing 123 n n 
C2' H2' FA5 sing 124 n n 
O2' HO2' FA5 sing 125 n n 
C1' N9 FA5 sing 126 n n 
C1' H1' FA5 sing 127 n n 
N9 C8 FA5 sing 128 n y 
N9 C4 FA5 sing 129 n y 
C8 N7 FA5 doub 130 n y 
C8 H8 FA5 sing 131 n n 
N7 C5 FA5 sing 132 n y 
C5 C6 FA5 sing 133 n y 
C5 C4 FA5 doub 134 n y 
C6 N6 FA5 sing 135 n n 
C6 N1 FA5 doub 136 n y 
N6 H61 FA5 sing 137 n n 
N6 H62 FA5 sing 138 n n 
N1 C2 FA5 sing 139 n y 
C2 N3 FA5 doub 140 n y 
C2 H2 FA5 sing 141 n n 
N3 C4 FA5 sing 142 n y 
#
_atom_sites.entry_id                     4R0M 
_atom_sites.fract_transf_matrix[1][1]    0.008284 
_atom_sites.fract_transf_matrix[1][2]    0.004783 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FA5 B 1 701 701 FA5 FA5 . 
D 2 FA5 A 1 701 701 FA5 FA5 . 
E 3 HOH B 1 801 3 HOH HOH . 
E 3 HOH B 2 802 4 HOH HOH . 
E 3 HOH B 3 803 6 HOH HOH . 
E 3 HOH B 4 804 7 HOH HOH . 
E 3 HOH B 5 805 8 HOH HOH . 
E 3 HOH B 6 806 9 HOH HOH . 
E 3 HOH B 7 807 11 HOH HOH . 
E 3 HOH B 8 808 12 HOH HOH . 
E 3 HOH B 9 809 14 HOH HOH . 
E 3 HOH B 10 810 15 HOH HOH . 
E 3 HOH B 11 811 16 HOH HOH . 
E 3 HOH B 12 812 17 HOH HOH . 
E 3 HOH B 13 813 20 HOH HOH . 
E 3 HOH B 14 814 21 HOH HOH . 
E 3 HOH B 15 815 22 HOH HOH . 
E 3 HOH B 16 816 26 HOH HOH . 
F 3 HOH A 1 801 1 HOH HOH . 
F 3 HOH A 2 802 2 HOH HOH . 
F 3 HOH A 3 803 5 HOH HOH . 
F 3 HOH A 4 804 10 HOH HOH . 
F 3 HOH A 5 805 13 HOH HOH . 
F 3 HOH A 6 806 18 HOH HOH . 
F 3 HOH A 7 807 19 HOH HOH . 
F 3 HOH A 8 808 23 HOH HOH . 
F 3 HOH A 9 809 24 HOH HOH . 
F 3 HOH A 10 810 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FA5 . . . D 2 40.85 -28.977 -12.43 0.6 33.1 ? C FA5 701 A 1 
HETATM 2 O O FA5 . . . D 2 40.264 -28.513 -11.464 0.6 33.87 ? O FA5 701 A 1 
HETATM 3 C CA FA5 . . . D 2 40.757 -28.278 -13.763 1 33.81 ? CA FA5 701 A 1 
HETATM 4 N N FA5 . . . D 2 39.343 -28.175 -14.005 1 36.17 ? N FA5 701 A 1 
HETATM 5 C CB FA5 . . . D 2 41.327 -26.851 -13.728 1 34.87 ? CB FA5 701 A 1 
HETATM 6 C CG FA5 . . . D 2 41.147 -25.95 -14.956 0.6 34.62 ? CG FA5 701 A 1 
HETATM 7 C CD1 FA5 . . . D 2 40.037 -26.007 -15.801 1 34.97 ? CD1 FA5 701 A 1 
HETATM 8 C CD2 FA5 . . . D 2 42.131 -24.994 -15.24 0.6 34.57 ? CD2 FA5 701 A 1 
HETATM 9 C CE1 FA5 . . . D 2 39.924 -25.153 -16.909 1 34.7 ? CE1 FA5 701 A 1 
HETATM 10 C CE2 FA5 . . . D 2 42.025 -24.131 -16.337 1 34.72 ? CE2 FA5 701 A 1 
HETATM 11 C CZ FA5 . . . D 2 40.914 -24.208 -17.18 1 34.8 ? CZ FA5 701 A 1 
HETATM 12 P P FA5 . . . D 2 41.067 -31.52 -11.442 1 29.95 ? P FA5 701 A 1 
HETATM 13 O OP1 FA5 . . . D 2 41.693 -31.532 -10.072 1 31.36 ? OP1 FA5 701 A 1 
HETATM 14 O OP2 FA5 . . . D 2 41.243 -32.728 -12.328 1 30.48 ? OP2 FA5 701 A 1 
HETATM 15 O OP3 FA5 . . . D 2 41.61 -30.216 -12.249 0.6 31.75 ? OP3 FA5 701 A 1 
HETATM 16 O O5' FA5 . . . D 2 39.492 -31.291 -11.249 1 29.7 ? O5' FA5 701 A 1 
HETATM 17 C C5' FA5 . . . D 2 38.594 -31.56 -12.316 1 28.94 ? C5' FA5 701 A 1 
HETATM 18 C C4' FA5 . . . D 2 37.183 -31.473 -11.777 1 28.35 ? C4' FA5 701 A 1 
HETATM 19 O O4' FA5 . . . D 2 36.892 -30.16 -11.296 1 28.27 ? O4' FA5 701 A 1 
HETATM 20 C C3' FA5 . . . D 2 36.153 -31.724 -12.856 1 28.38 ? C3' FA5 701 A 1 
HETATM 21 O O3' FA5 . . . D 2 35.946 -33.122 -13.069 1 28.66 ? O3' FA5 701 A 1 
HETATM 22 C C2' FA5 . . . D 2 34.932 -31.034 -12.301 1 28.3 ? C2' FA5 701 A 1 
HETATM 23 O O2' FA5 . . . D 2 34.255 -31.915 -11.401 1 27.8 ? O2' FA5 701 A 1 
HETATM 24 C C1' FA5 . . . D 2 35.508 -29.867 -11.52 1 28.43 ? C1' FA5 701 A 1 
HETATM 25 N N9 FA5 . . . D 2 35.359 -28.62 -12.314 1 29.1 ? N9 FA5 701 A 1 
HETATM 26 C C8 FA5 . . . D 2 36.319 -28.02 -13.047 1 29.06 ? C8 FA5 701 A 1 
HETATM 27 N N7 FA5 . . . D 2 35.857 -26.894 -13.645 1 28.72 ? N7 FA5 701 A 1 
HETATM 28 C C5 FA5 . . . D 2 34.564 -26.76 -13.295 1 29.13 ? C5 FA5 701 A 1 
HETATM 29 C C6 FA5 . . . D 2 33.468 -25.797 -13.573 1 29.26 ? C6 FA5 701 A 1 
HETATM 30 N N6 FA5 . . . D 2 33.666 -24.719 -14.367 1 28.97 ? N6 FA5 701 A 1 
HETATM 31 N N1 FA5 . . . D 2 32.259 -26.032 -13.006 1 29.63 ? N1 FA5 701 A 1 
HETATM 32 C C2 FA5 . . . D 2 32.038 -27.1 -12.212 1 29.31 ? C2 FA5 701 A 1 
HETATM 33 N N3 FA5 . . . D 2 32.985 -28.009 -11.918 1 29.22 ? N3 FA5 701 A 1 
HETATM 34 C C4 FA5 . . . D 2 34.24 -27.899 -12.419 1 29.01 ? C4 FA5 701 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#