data_4R0O # _model_server_result.job_id y0av9NJz6jFNmHje3yei_A _model_server_result.datetime_utc '2024-10-11 02:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 4R0O # _exptl.entry_id 4R0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 113.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methylpyrrolidine-2,5-dione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R0O _cell.length_a 116.14 _cell.length_b 116.14 _cell.length_c 172.14 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 46 A CYS 45 1_555 F C1 LCY . A LCY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale2 B SG CYS 46 B CYS 45 1_555 H C1 LCY . B LCY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? covale ? covale3 C SG CYS 46 C CYS 45 1_555 J C1 LCY . C LCY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? covale ? covale4 D SG CYS 46 D CYS 45 1_555 L C1 LCY . D LCY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? metalc ? metalc1 A ND1 HIS 40 A HIS 39 1_555 E CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc2 A SG CYS 90 A CYS 89 1_555 E CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A ND1 HIS 93 A HIS 92 1_555 E CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc4 A SD MET 98 A MET 97 1_555 E CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 B ND1 HIS 40 B HIS 39 1_555 G CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc6 B SG CYS 90 B CYS 89 1_555 G CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 B ND1 HIS 93 B HIS 92 1_555 G CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc8 B SD MET 98 B MET 97 1_555 G CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 C ND1 HIS 40 C HIS 39 1_555 I CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 C SG CYS 90 C CYS 89 1_555 I CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 C ND1 HIS 93 C HIS 92 1_555 I CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc12 C SD MET 98 C MET 97 1_555 I CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 D ND1 HIS 40 D HIS 39 1_555 K CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 D SG CYS 90 D CYS 89 1_555 K CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc15 D ND1 HIS 93 D HIS 92 1_555 K CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc16 D SD MET 98 D MET 97 1_555 K CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C5 H7 N O2' _chem_comp.formula_weight 113.115 _chem_comp.id LCY _chem_comp.mon_nstd_flag . _chem_comp.name 1-methylpyrrolidine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LCY sing 171 n n C1 C4 LCY sing 172 n n C2 C3 LCY sing 173 n n C3 O2 LCY doub 174 n n C3 N1 LCY sing 175 n n N1 C4 LCY sing 176 n n N1 C5 LCY sing 177 n n C4 O1 LCY doub 178 n n C1 H1 LCY sing 179 n n C1 H1A LCY sing 180 n n C2 H2 LCY sing 181 n n C2 H2A LCY sing 182 n n C5 H5 LCY sing 183 n n C5 H5A LCY sing 184 n n C5 H5B LCY sing 185 n n # _atom_sites.entry_id 4R0O _atom_sites.fract_transf_matrix[1][1] 0.00861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU A 1 201 1 CU CU . F 3 LCY A 1 202 1 LCY LCY . G 2 CU B 1 201 2 CU CU . H 3 LCY B 1 202 2 LCY LCY . I 2 CU C 1 201 3 CU CU . J 3 LCY C 1 202 3 LCY LCY . K 2 CU D 1 201 4 CU CU . L 3 LCY D 1 202 4 LCY LCY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LCY . . . J 3 28.404 25.353 35.135 1 175.98 ? C1 LCY 202 C 1 HETATM 2 C C2 LCY . . . J 3 27.76 24.207 35.898 1 165.15 ? C2 LCY 202 C 1 HETATM 3 C C3 LCY . . . J 3 26.294 24.557 35.827 1 171.64 ? C3 LCY 202 C 1 HETATM 4 O O2 LCY . . . J 3 25.429 23.87 36.344 1 178.47 ? O2 LCY 202 C 1 HETATM 5 N N1 LCY . . . J 3 26.081 25.679 35.143 1 170.9 ? N1 LCY 202 C 1 HETATM 6 C C4 LCY . . . J 3 27.231 26.211 34.74 1 186.89 ? C4 LCY 202 C 1 HETATM 7 O O1 LCY . . . J 3 27.355 27.257 34.123 1 205.24 ? O1 LCY 202 C 1 HETATM 8 C C5 LCY . . . J 3 24.768 26.243 34.868 1 146.35 ? C5 LCY 202 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #