data_4R10
#
_model_server_result.job_id            0hqMYzIWh0NsDjJCguRlnA 
_model_server_result.datetime_utc      '2024-11-24 11:55:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r10 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    4R10 
#
_exptl.entry_id    4R10 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4R10 
_cell.length_a            84.72 
_cell.length_b            84.72 
_cell.length_c            136.989 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R10 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            ILE 
_struct_conn.ptnr1_label_seq_id             72 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             ILE 
_struct_conn.ptnr1_auth_seq_id              1211 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            SEP 
_struct_conn.ptnr2_label_seq_id             73 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             SEP 
_struct_conn.ptnr2_auth_seq_id              1212 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.33 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4R10 
_atom_sites.fract_transf_matrix[1][1]    0.011804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 1001 1001 SO4 SO4 . 
D 4 EDO A 1 1002 2001 EDO EGL . 
E 5 HOH A 1 1101 1 HOH HOH . 
E 5 HOH A 2 1102 3 HOH HOH . 
E 5 HOH A 3 1103 4 HOH HOH . 
E 5 HOH A 4 1104 5 HOH HOH . 
E 5 HOH A 5 1105 6 HOH HOH . 
E 5 HOH A 6 1106 7 HOH HOH . 
E 5 HOH A 7 1107 8 HOH HOH . 
E 5 HOH A 8 1108 9 HOH HOH . 
E 5 HOH A 9 1109 10 HOH HOH . 
E 5 HOH A 10 1110 11 HOH HOH . 
E 5 HOH A 11 1111 12 HOH HOH . 
E 5 HOH A 12 1112 13 HOH HOH . 
E 5 HOH A 13 1113 14 HOH HOH . 
E 5 HOH A 14 1114 15 HOH HOH . 
E 5 HOH A 15 1115 17 HOH HOH . 
E 5 HOH A 16 1116 18 HOH HOH . 
E 5 HOH A 17 1117 19 HOH HOH . 
E 5 HOH A 18 1118 22 HOH HOH . 
E 5 HOH A 19 1119 23 HOH HOH . 
E 5 HOH A 20 1120 24 HOH HOH . 
E 5 HOH A 21 1121 25 HOH HOH . 
E 5 HOH A 22 1122 26 HOH HOH . 
E 5 HOH A 23 1123 27 HOH HOH . 
E 5 HOH A 24 1124 28 HOH HOH . 
E 5 HOH A 25 1125 29 HOH HOH . 
E 5 HOH A 26 1126 30 HOH HOH . 
E 5 HOH A 27 1127 31 HOH HOH . 
E 5 HOH A 28 1128 32 HOH HOH . 
E 5 HOH A 29 1129 33 HOH HOH . 
E 5 HOH A 30 1130 34 HOH HOH . 
E 5 HOH A 31 1131 36 HOH HOH . 
E 5 HOH A 32 1132 37 HOH HOH . 
E 5 HOH A 33 1133 38 HOH HOH . 
E 5 HOH A 34 1134 39 HOH HOH . 
E 5 HOH A 35 1135 40 HOH HOH . 
E 5 HOH A 36 1136 41 HOH HOH . 
E 5 HOH A 37 1137 42 HOH HOH . 
E 5 HOH A 38 1138 43 HOH HOH . 
E 5 HOH A 39 1139 44 HOH HOH . 
E 5 HOH A 40 1140 45 HOH HOH . 
E 5 HOH A 41 1141 46 HOH HOH . 
E 5 HOH A 42 1142 47 HOH HOH . 
E 5 HOH A 43 1143 48 HOH HOH . 
E 5 HOH A 44 1144 49 HOH HOH . 
E 5 HOH A 45 1145 50 HOH HOH . 
E 5 HOH A 46 1146 51 HOH HOH . 
E 5 HOH A 47 1147 52 HOH HOH . 
E 5 HOH A 48 1148 53 HOH HOH . 
E 5 HOH A 49 1149 54 HOH HOH . 
E 5 HOH A 50 1150 55 HOH HOH . 
E 5 HOH A 51 1151 56 HOH HOH . 
E 5 HOH A 52 1152 57 HOH HOH . 
E 5 HOH A 53 1153 58 HOH HOH . 
E 5 HOH A 54 1154 59 HOH HOH . 
E 5 HOH A 55 1155 60 HOH HOH . 
E 5 HOH A 56 1156 62 HOH HOH . 
E 5 HOH A 57 1157 63 HOH HOH . 
E 5 HOH A 58 1158 64 HOH HOH . 
E 5 HOH A 59 1159 65 HOH HOH . 
E 5 HOH A 60 1160 66 HOH HOH . 
E 5 HOH A 61 1161 67 HOH HOH . 
E 5 HOH A 62 1162 68 HOH HOH . 
E 5 HOH A 63 1163 69 HOH HOH . 
E 5 HOH A 64 1164 70 HOH HOH . 
E 5 HOH A 65 1165 71 HOH HOH . 
E 5 HOH A 66 1166 72 HOH HOH . 
E 5 HOH A 67 1167 73 HOH HOH . 
E 5 HOH A 68 1168 74 HOH HOH . 
E 5 HOH A 69 1169 75 HOH HOH . 
E 5 HOH A 70 1170 76 HOH HOH . 
E 5 HOH A 71 1171 77 HOH HOH . 
E 5 HOH A 72 1172 78 HOH HOH . 
E 5 HOH A 73 1173 79 HOH HOH . 
E 5 HOH A 74 1174 80 HOH HOH . 
E 5 HOH A 75 1175 81 HOH HOH . 
E 5 HOH A 76 1176 82 HOH HOH . 
E 5 HOH A 77 1177 83 HOH HOH . 
E 5 HOH A 78 1178 84 HOH HOH . 
E 5 HOH A 79 1179 85 HOH HOH . 
E 5 HOH A 80 1180 86 HOH HOH . 
E 5 HOH A 81 1181 87 HOH HOH . 
E 5 HOH A 82 1182 88 HOH HOH . 
E 5 HOH A 83 1183 89 HOH HOH . 
E 5 HOH A 84 1184 90 HOH HOH . 
E 5 HOH A 85 1185 91 HOH HOH . 
E 5 HOH A 86 1186 92 HOH HOH . 
E 5 HOH A 87 1187 93 HOH HOH . 
E 5 HOH A 88 1188 94 HOH HOH . 
E 5 HOH A 89 1189 95 HOH HOH . 
E 5 HOH A 90 1190 96 HOH HOH . 
E 5 HOH A 91 1191 97 HOH HOH . 
E 5 HOH A 92 1192 98 HOH HOH . 
E 5 HOH A 93 1193 99 HOH HOH . 
E 5 HOH A 94 1194 100 HOH HOH . 
E 5 HOH A 95 1195 101 HOH HOH . 
E 5 HOH A 96 1196 102 HOH HOH . 
E 5 HOH A 97 1197 103 HOH HOH . 
E 5 HOH A 98 1198 104 HOH HOH . 
E 5 HOH A 99 1199 105 HOH HOH . 
E 5 HOH A 100 1200 106 HOH HOH . 
E 5 HOH A 101 1201 107 HOH HOH . 
E 5 HOH A 102 1202 108 HOH HOH . 
E 5 HOH A 103 1203 110 HOH HOH . 
E 5 HOH A 104 1204 111 HOH HOH . 
E 5 HOH A 105 1205 112 HOH HOH . 
E 5 HOH A 106 1206 113 HOH HOH . 
E 5 HOH A 107 1207 114 HOH HOH . 
E 5 HOH A 108 1208 115 HOH HOH . 
E 5 HOH A 109 1209 116 HOH HOH . 
E 5 HOH A 110 1210 117 HOH HOH . 
E 5 HOH A 111 1211 118 HOH HOH . 
E 5 HOH A 112 1212 119 HOH HOH . 
E 5 HOH A 113 1213 120 HOH HOH . 
E 5 HOH A 114 1214 121 HOH HOH . 
E 5 HOH A 115 1215 122 HOH HOH . 
E 5 HOH A 116 1216 124 HOH HOH . 
E 5 HOH A 117 1217 125 HOH HOH . 
E 5 HOH A 118 1218 126 HOH HOH . 
E 5 HOH A 119 1219 127 HOH HOH . 
E 5 HOH A 120 1220 128 HOH HOH . 
E 5 HOH A 121 1221 129 HOH HOH . 
E 5 HOH A 122 1222 130 HOH HOH . 
E 5 HOH A 123 1223 131 HOH HOH . 
E 5 HOH A 124 1224 132 HOH HOH . 
E 5 HOH A 125 1225 134 HOH HOH . 
E 5 HOH A 126 1226 135 HOH HOH . 
E 5 HOH A 127 1227 136 HOH HOH . 
E 5 HOH A 128 1228 137 HOH HOH . 
E 5 HOH A 129 1229 138 HOH HOH . 
E 5 HOH A 130 1230 139 HOH HOH . 
E 5 HOH A 131 1231 140 HOH HOH . 
E 5 HOH A 132 1232 141 HOH HOH . 
E 5 HOH A 133 1233 142 HOH HOH . 
E 5 HOH A 134 1234 143 HOH HOH . 
E 5 HOH A 135 1235 144 HOH HOH . 
E 5 HOH A 136 1236 145 HOH HOH . 
E 5 HOH A 137 1237 146 HOH HOH . 
E 5 HOH A 138 1238 147 HOH HOH . 
E 5 HOH A 139 1239 148 HOH HOH . 
E 5 HOH A 140 1240 149 HOH HOH . 
E 5 HOH A 141 1241 150 HOH HOH . 
E 5 HOH A 142 1242 151 HOH HOH . 
E 5 HOH A 143 1243 152 HOH HOH . 
E 5 HOH A 144 1244 153 HOH HOH . 
E 5 HOH A 145 1245 154 HOH HOH . 
E 5 HOH A 146 1246 155 HOH HOH . 
E 5 HOH A 147 1247 156 HOH HOH . 
E 5 HOH A 148 1248 157 HOH HOH . 
E 5 HOH A 149 1249 158 HOH HOH . 
E 5 HOH A 150 1250 159 HOH HOH . 
E 5 HOH A 151 1251 161 HOH HOH . 
E 5 HOH A 152 1252 162 HOH HOH . 
E 5 HOH A 153 1253 163 HOH HOH . 
E 5 HOH A 154 1254 164 HOH HOH . 
E 5 HOH A 155 1255 165 HOH HOH . 
E 5 HOH A 156 1256 166 HOH HOH . 
E 5 HOH A 157 1257 167 HOH HOH . 
E 5 HOH A 158 1258 168 HOH HOH . 
E 5 HOH A 159 1259 169 HOH HOH . 
E 5 HOH A 160 1260 170 HOH HOH . 
E 5 HOH A 161 1261 171 HOH HOH . 
E 5 HOH A 162 1262 172 HOH HOH . 
E 5 HOH A 163 1263 173 HOH HOH . 
E 5 HOH A 164 1264 174 HOH HOH . 
E 5 HOH A 165 1265 175 HOH HOH . 
E 5 HOH A 166 1266 176 HOH HOH . 
E 5 HOH A 167 1267 177 HOH HOH . 
E 5 HOH A 168 1268 178 HOH HOH . 
E 5 HOH A 169 1269 180 HOH HOH . 
E 5 HOH A 170 1270 182 HOH HOH . 
E 5 HOH A 171 1271 183 HOH HOH . 
E 5 HOH A 172 1272 184 HOH HOH . 
E 5 HOH A 173 1273 185 HOH HOH . 
E 5 HOH A 174 1274 186 HOH HOH . 
F 5 HOH B 1 1301 2 HOH HOH . 
F 5 HOH B 2 1302 16 HOH HOH . 
F 5 HOH B 3 1303 20 HOH HOH . 
F 5 HOH B 4 1304 21 HOH HOH . 
F 5 HOH B 5 1305 35 HOH HOH . 
F 5 HOH B 6 1306 61 HOH HOH . 
F 5 HOH B 7 1307 109 HOH HOH . 
F 5 HOH B 8 1308 123 HOH HOH . 
F 5 HOH B 9 1309 133 HOH HOH . 
F 5 HOH B 10 1310 160 HOH HOH . 
F 5 HOH B 11 1311 179 HOH HOH . 
F 5 HOH B 12 1312 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -44.509 -48.295 -3.323 1 38.08 ? C1 EDO 1002 A 1 
HETATM 2 O O1 EDO . . . D 4 -44.157 -49.662 -3.116 1 55.16 ? O1 EDO 1002 A 1 
HETATM 3 C C2 EDO . . . D 4 -43.335 -47.404 -2.95 1 36.7 ? C2 EDO 1002 A 1 
HETATM 4 O O2 EDO . . . D 4 -42.187 -47.764 -3.719 1 34.45 ? O2 EDO 1002 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#