data_4R1F # _model_server_result.job_id BW6lE2Q4UIOdOesWYMLaXA _model_server_result.datetime_utc '2024-12-23 15:16:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 4R1F # _exptl.entry_id 4R1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.97 _cell.angle_gamma 90 _cell.entry_id 4R1F _cell.length_a 71.015 _cell.length_b 90.492 _cell.length_c 148.293 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 63 A ASN 91 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 E MG MG . A MG 501 1_555 F O1A ADP . A ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 E MG MG . A MG 501 1_555 F O3B ADP . A ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 E MG MG . A MG 501 1_555 Q O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 E MG MG . A MG 501 1_555 Q O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 E MG MG . A MG 501 1_555 Q O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 B OD1 ASN 63 B ASN 91 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 H MG MG . B MG 501 1_555 J O1A ADP . B ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 H MG MG . B MG 501 1_555 J O1B ADP . B ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc10 H MG MG . B MG 501 1_555 R O HOH . B HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 H MG MG . B MG 501 1_555 R O HOH . B HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc12 H MG MG . B MG 501 1_555 R O HOH . B HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc13 C OD1 ASN 63 C ASN 91 1_555 K MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc14 K MG MG . C MG 501 1_555 L O1B ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc15 K MG MG . C MG 501 1_555 L O1A ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc16 K MG MG . C MG 501 1_555 S O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc17 K MG MG . C MG 501 1_555 S O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc18 K MG MG . C MG 501 1_555 S O HOH . C HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc19 D OD1 ASN 63 D ASN 91 1_555 N MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc20 N MG MG . D MG 501 1_555 P O3B ADP . D ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc21 N MG MG . D MG 501 1_555 P O1A ADP . D ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc22 N MG MG . D MG 501 1_555 T O HOH . D HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc23 N MG MG . D MG 501 1_555 T O HOH . D HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc24 N MG MG . D MG 501 1_555 T O HOH . D HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 4R1F _atom_sites.fract_transf_matrix[1][1] 0.014082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 501 900 MG MG . F 3 ADP A 1 502 901 ADP ADP . G 4 GOL A 1 503 599 GOL GOL . H 2 MG B 1 501 902 MG MG . I 5 SO4 B 1 502 909 SO4 SO4 . J 3 ADP B 1 503 903 ADP ADP . K 2 MG C 1 501 904 MG MG . L 3 ADP C 1 502 905 ADP ADP . M 5 SO4 C 1 503 901 SO4 SO4 . N 2 MG D 1 501 906 MG MG . O 5 SO4 D 1 502 908 SO4 SO4 . P 3 ADP D 1 503 907 ADP ADP . Q 6 HOH A 1 601 902 HOH HOH . Q 6 HOH A 2 602 903 HOH HOH . Q 6 HOH A 3 603 906 HOH HOH . Q 6 HOH A 4 604 907 HOH HOH . Q 6 HOH A 5 605 908 HOH HOH . Q 6 HOH A 6 606 910 HOH HOH . Q 6 HOH A 7 607 912 HOH HOH . Q 6 HOH A 8 608 913 HOH HOH . Q 6 HOH A 9 609 916 HOH HOH . Q 6 HOH A 10 610 918 HOH HOH . Q 6 HOH A 11 611 921 HOH HOH . Q 6 HOH A 12 612 922 HOH HOH . Q 6 HOH A 13 613 924 HOH HOH . Q 6 HOH A 14 614 925 HOH HOH . Q 6 HOH A 15 615 926 HOH HOH . Q 6 HOH A 16 616 927 HOH HOH . Q 6 HOH A 17 617 929 HOH HOH . Q 6 HOH A 18 618 930 HOH HOH . Q 6 HOH A 19 619 933 HOH HOH . Q 6 HOH A 20 620 935 HOH HOH . Q 6 HOH A 21 621 938 HOH HOH . Q 6 HOH A 22 622 941 HOH HOH . Q 6 HOH A 23 623 944 HOH HOH . Q 6 HOH A 24 624 945 HOH HOH . Q 6 HOH A 25 625 946 HOH HOH . Q 6 HOH A 26 626 947 HOH HOH . Q 6 HOH A 27 627 948 HOH HOH . Q 6 HOH A 28 628 950 HOH HOH . Q 6 HOH A 29 629 952 HOH HOH . Q 6 HOH A 30 630 954 HOH HOH . Q 6 HOH A 31 631 955 HOH HOH . Q 6 HOH A 32 632 956 HOH HOH . Q 6 HOH A 33 633 958 HOH HOH . Q 6 HOH A 34 634 959 HOH HOH . Q 6 HOH A 35 635 960 HOH HOH . Q 6 HOH A 36 636 932 HOH HOH . Q 6 HOH A 37 637 948 HOH HOH . R 6 HOH B 1 601 910 HOH HOH . R 6 HOH B 2 602 911 HOH HOH . R 6 HOH B 3 603 912 HOH HOH . R 6 HOH B 4 604 914 HOH HOH . R 6 HOH B 5 605 915 HOH HOH . R 6 HOH B 6 606 916 HOH HOH . R 6 HOH B 7 607 917 HOH HOH . R 6 HOH B 8 608 918 HOH HOH . R 6 HOH B 9 609 919 HOH HOH . R 6 HOH B 10 610 920 HOH HOH . R 6 HOH B 11 611 921 HOH HOH . R 6 HOH B 12 612 924 HOH HOH . R 6 HOH B 13 613 925 HOH HOH . R 6 HOH B 14 614 926 HOH HOH . R 6 HOH B 15 615 928 HOH HOH . R 6 HOH B 16 616 929 HOH HOH . R 6 HOH B 17 617 930 HOH HOH . R 6 HOH B 18 618 931 HOH HOH . R 6 HOH B 19 619 933 HOH HOH . R 6 HOH B 20 620 934 HOH HOH . R 6 HOH B 21 621 939 HOH HOH . R 6 HOH B 22 622 941 HOH HOH . R 6 HOH B 23 623 942 HOH HOH . R 6 HOH B 24 624 943 HOH HOH . R 6 HOH B 25 625 945 HOH HOH . R 6 HOH B 26 626 947 HOH HOH . R 6 HOH B 27 627 952 HOH HOH . R 6 HOH B 28 628 953 HOH HOH . R 6 HOH B 29 629 954 HOH HOH . R 6 HOH B 30 630 955 HOH HOH . R 6 HOH B 31 631 962 HOH HOH . R 6 HOH B 32 632 964 HOH HOH . R 6 HOH B 33 633 965 HOH HOH . R 6 HOH B 34 634 967 HOH HOH . R 6 HOH B 35 635 969 HOH HOH . R 6 HOH B 36 636 970 HOH HOH . R 6 HOH B 37 637 971 HOH HOH . R 6 HOH B 38 638 973 HOH HOH . R 6 HOH B 39 639 974 HOH HOH . R 6 HOH B 40 640 975 HOH HOH . R 6 HOH B 41 641 976 HOH HOH . R 6 HOH B 42 642 977 HOH HOH . R 6 HOH B 43 643 978 HOH HOH . R 6 HOH B 44 644 979 HOH HOH . R 6 HOH B 45 645 980 HOH HOH . R 6 HOH B 46 646 981 HOH HOH . S 6 HOH C 1 601 907 HOH HOH . S 6 HOH C 2 602 908 HOH HOH . S 6 HOH C 3 603 909 HOH HOH . S 6 HOH C 4 604 912 HOH HOH . S 6 HOH C 5 605 916 HOH HOH . S 6 HOH C 6 606 918 HOH HOH . S 6 HOH C 7 607 919 HOH HOH . S 6 HOH C 8 608 920 HOH HOH . S 6 HOH C 9 609 921 HOH HOH . S 6 HOH C 10 610 922 HOH HOH . S 6 HOH C 11 611 923 HOH HOH . S 6 HOH C 12 612 925 HOH HOH . S 6 HOH C 13 613 926 HOH HOH . S 6 HOH C 14 614 929 HOH HOH . S 6 HOH C 15 615 930 HOH HOH . S 6 HOH C 16 616 931 HOH HOH . S 6 HOH C 17 617 934 HOH HOH . S 6 HOH C 18 618 935 HOH HOH . S 6 HOH C 19 619 937 HOH HOH . S 6 HOH C 20 620 943 HOH HOH . S 6 HOH C 21 621 944 HOH HOH . S 6 HOH C 22 622 945 HOH HOH . S 6 HOH C 23 623 946 HOH HOH . S 6 HOH C 24 624 948 HOH HOH . S 6 HOH C 25 625 953 HOH HOH . S 6 HOH C 26 626 954 HOH HOH . S 6 HOH C 27 627 955 HOH HOH . S 6 HOH C 28 628 956 HOH HOH . S 6 HOH C 29 629 957 HOH HOH . S 6 HOH C 30 630 960 HOH HOH . S 6 HOH C 31 631 961 HOH HOH . S 6 HOH C 32 632 962 HOH HOH . S 6 HOH C 33 633 963 HOH HOH . S 6 HOH C 34 634 965 HOH HOH . S 6 HOH C 35 635 968 HOH HOH . S 6 HOH C 36 636 971 HOH HOH . S 6 HOH C 37 637 973 HOH HOH . S 6 HOH C 38 638 975 HOH HOH . S 6 HOH C 39 639 976 HOH HOH . S 6 HOH C 40 640 910 HOH HOH . T 6 HOH D 1 601 936 HOH HOH . T 6 HOH D 2 602 912 HOH HOH . T 6 HOH D 3 603 915 HOH HOH . T 6 HOH D 4 604 923 HOH HOH . T 6 HOH D 5 605 926 HOH HOH . T 6 HOH D 6 606 930 HOH HOH . T 6 HOH D 7 607 933 HOH HOH . T 6 HOH D 8 608 936 HOH HOH . T 6 HOH D 9 609 940 HOH HOH . T 6 HOH D 10 610 941 HOH HOH . T 6 HOH D 11 611 942 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 56.639 1.187 76.969 1 66.73 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . G 4 55.794 0.084 76.653 1 59.01 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . G 4 57.203 1.992 75.775 1 66.95 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . G 4 57.422 1.149 74.641 1 76.76 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . G 4 58.573 2.656 76.049 1 71.67 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . G 4 59.282 3.083 74.852 1 67.24 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #