data_4R1Z # _model_server_result.job_id 3CzctNCP5qapBYHWImLzWg _model_server_result.datetime_utc '2024-10-12 12:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 4R1Z # _exptl.entry_id 4R1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R1Z _cell.length_a 136.63 _cell.length_b 136.63 _cell.length_c 135.441 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 66 B CYS 146 1_555 A SG CYS 66 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 C FE HEM . A HEM 600 1_555 D N22 AER . A AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 E FE HEM . B HEM 600 1_555 F N22 AER . B AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc3 B SG CYS 373 B CYS 453 1_555 E FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A SG CYS 373 A CYS 453 1_555 C FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 4R1Z _atom_sites.fract_transf_matrix[1][1] 0.007319 _atom_sites.fract_transf_matrix[1][2] 0.004226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 600 600 HEM HEM . D 3 AER A 1 601 601 AER AER . E 2 HEM B 1 600 600 HEM HEM . F 3 AER B 1 601 601 AER AER . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 7 HOH HOH . G 4 HOH A 8 708 8 HOH HOH . G 4 HOH A 9 709 9 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 14 HOH HOH . G 4 HOH A 12 712 15 HOH HOH . H 4 HOH B 1 701 11 HOH HOH . H 4 HOH B 2 702 12 HOH HOH . H 4 HOH B 3 703 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 67.819 59.751 36.063 1 50.38 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . C 2 66.048 56.411 39.044 1 52.3 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . C 2 63.986 54.227 35.293 1 54.66 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . C 2 65.467 57.712 32.338 1 47.94 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . C 2 67.528 59.01 37.189 1 52.49 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . C 2 68.185 59.161 38.435 1 48.89 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . C 2 67.681 58.233 39.245 1 49.1 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . C 2 66.717 57.5 38.549 1 50.6 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . C 2 68.095 58.055 40.663 1 53.86 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . C 2 69.251 60.151 38.825 1 46.79 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . C 2 68.66 61.207 39.737 1 51.63 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . C 2 69.636 62.333 39.961 1 50.4 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . C 2 69.335 63.306 40.722 1 51.79 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . C 2 70.727 62.269 39.366 1 45.12 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . C 2 65.329 55.507 38.256 1 51.83 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . C 2 64.722 54.329 38.771 1 48.31 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . C 2 64.132 53.682 37.758 1 50.13 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . C 2 64.421 54.523 36.565 1 52.05 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . C 2 64.69 53.815 40.171 1 49.23 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . C 2 63.397 52.402 37.942 1 49.92 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . C 2 62.841 51.663 36.975 1 48.91 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . C 2 64.179 54.981 34.159 1 52.56 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . C 2 63.649 54.648 32.92 1 51.33 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . C 2 64.068 55.618 32.057 1 50.03 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . C 2 64.837 56.575 32.786 1 47.91 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . C 2 62.782 53.443 32.582 1 49.37 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . C 2 63.582 55.533 30.687 1 57.41 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . C 2 63.635 56.531 29.849 1 62.64 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . C 2 66.248 58.537 33.172 1 48.32 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . C 2 66.985 59.697 32.658 1 46.26 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . C 2 67.629 60.248 33.682 1 44.62 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . C 2 67.296 59.434 34.832 1 47.1 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . C 2 67.04 60.208 31.255 1 48.32 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . C 2 68.532 61.444 33.647 1 42.21 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . C 2 67.802 62.664 34.187 1 41.01 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . C 2 68.733 63.855 34.212 1 40.4 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . C 2 68.425 65.014 33.831 1 35.59 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . C 2 69.875 63.685 34.649 1 44.75 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . C 2 66.685 57.923 37.261 1 53.4 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . C 2 65.104 55.586 36.947 1 51.99 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . C 2 64.894 56.112 34.073 1 50.12 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . C 2 66.45 58.444 34.504 1 49.55 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . C 2 65.834 57.077 35.66 1 57.67 ? FE HEM 600 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #