data_4R1Z # _model_server_result.job_id g86trFCR2qL09db4BIp4gw _model_server_result.datetime_utc '2025-02-16 17:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 4R1Z # _exptl.entry_id 4R1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R1Z _cell.length_a 136.63 _cell.length_b 136.63 _cell.length_c 135.441 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 146 1_555 B SG CYS 66 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A SG CYS 373 A CYS 453 1_555 C FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 C FE HEM . A HEM 600 1_555 D N22 AER . A AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 B SG CYS 373 B CYS 453 1_555 E FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 E FE HEM . B HEM 600 1_555 F N22 AER . B AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 190 n n CHA C4D HEM doub 191 n n CHA HHA HEM sing 192 n n CHB C4A HEM sing 193 n n CHB C1B HEM doub 194 n n CHB HHB HEM sing 195 n n CHC C4B HEM sing 196 n n CHC C1C HEM doub 197 n n CHC HHC HEM sing 198 n n CHD C4C HEM doub 199 n n CHD C1D HEM sing 200 n n CHD HHD HEM sing 201 n n C1A C2A HEM doub 202 n y C1A NA HEM sing 203 n y C2A C3A HEM sing 204 n y C2A CAA HEM sing 205 n n C3A C4A HEM doub 206 n y C3A CMA HEM sing 207 n n C4A NA HEM sing 208 n y CMA HMA HEM sing 209 n n CMA HMAA HEM sing 210 n n CMA HMAB HEM sing 211 n n CAA CBA HEM sing 212 n n CAA HAA HEM sing 213 n n CAA HAAA HEM sing 214 n n CBA CGA HEM sing 215 n n CBA HBA HEM sing 216 n n CBA HBAA HEM sing 217 n n CGA O1A HEM doub 218 n n CGA O2A HEM sing 219 n n C1B C2B HEM sing 220 n n C1B NB HEM sing 221 n n C2B C3B HEM doub 222 n n C2B CMB HEM sing 223 n n C3B C4B HEM sing 224 n n C3B CAB HEM sing 225 n n C4B NB HEM doub 226 n n CMB HMB HEM sing 227 n n CMB HMBA HEM sing 228 n n CMB HMBB HEM sing 229 n n CAB CBB HEM doub 230 n n CAB HAB HEM sing 231 n n CBB HBB HEM sing 232 n n CBB HBBA HEM sing 233 n n C1C C2C HEM sing 234 n y C1C NC HEM sing 235 n y C2C C3C HEM doub 236 n y C2C CMC HEM sing 237 n n C3C C4C HEM sing 238 n y C3C CAC HEM sing 239 n n C4C NC HEM sing 240 n y CMC HMC HEM sing 241 n n CMC HMCA HEM sing 242 n n CMC HMCB HEM sing 243 n n CAC CBC HEM doub 244 n n CAC HAC HEM sing 245 n n CBC HBC HEM sing 246 n n CBC HBCA HEM sing 247 n n C1D C2D HEM sing 248 n n C1D ND HEM doub 249 n n C2D C3D HEM doub 250 n n C2D CMD HEM sing 251 n n C3D C4D HEM sing 252 n n C3D CAD HEM sing 253 n n C4D ND HEM sing 254 n n CMD HMD HEM sing 255 n n CMD HMDA HEM sing 256 n n CMD HMDB HEM sing 257 n n CAD CBD HEM sing 258 n n CAD HAD HEM sing 259 n n CAD HADA HEM sing 260 n n CBD CGD HEM sing 261 n n CBD HBD HEM sing 262 n n CBD HBDA HEM sing 263 n n CGD O1D HEM doub 264 n n CGD O2D HEM sing 265 n n O2A H2A HEM sing 266 n n O2D H2D HEM sing 267 n n FE NA HEM sing 268 n n FE NB HEM sing 269 n n FE NC HEM sing 270 n n FE ND HEM sing 271 n n # _atom_sites.entry_id 4R1Z _atom_sites.fract_transf_matrix[1][1] 0.007319 _atom_sites.fract_transf_matrix[1][2] 0.004226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 600 600 HEM HEM . D 3 AER A 1 601 601 AER AER . E 2 HEM B 1 600 600 HEM HEM . F 3 AER B 1 601 601 AER AER . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 7 HOH HOH . G 4 HOH A 8 708 8 HOH HOH . G 4 HOH A 9 709 9 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 14 HOH HOH . G 4 HOH A 12 712 15 HOH HOH . H 4 HOH B 1 701 11 HOH HOH . H 4 HOH B 2 702 12 HOH HOH . H 4 HOH B 3 703 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 35.765 65.469 35.624 1 55.56 ? CHA HEM 600 B 1 HETATM 2 C CHB HEM . . . E 2 37.042 66.784 40.073 1 50 ? CHB HEM 600 B 1 HETATM 3 C CHC HEM . . . E 2 39.487 70.484 38.195 1 50.31 ? CHC HEM 600 B 1 HETATM 4 C CHD HEM . . . E 2 38.597 68.911 33.721 1 49.36 ? CHD HEM 600 B 1 HETATM 5 C C1A HEM . . . E 2 35.889 65.515 36.994 1 58.44 ? C1A HEM 600 B 1 HETATM 6 C C2A HEM . . . E 2 35.152 64.695 37.912 1 55.88 ? C2A HEM 600 B 1 HETATM 7 C C3A HEM . . . E 2 35.528 65.098 39.149 1 53.86 ? C3A HEM 600 B 1 HETATM 8 C C4A HEM . . . E 2 36.487 66.118 39.021 1 53.06 ? C4A HEM 600 B 1 HETATM 9 C CMA HEM . . . E 2 35.018 64.531 40.431 1 55.57 ? CMA HEM 600 B 1 HETATM 10 C CAA HEM . . . E 2 34.122 63.615 37.598 1 51.46 ? CAA HEM 600 B 1 HETATM 11 C CBA HEM . . . E 2 34.612 62.195 37.869 1 54.15 ? CBA HEM 600 B 1 HETATM 12 C CGA HEM . . . E 2 33.516 61.176 37.587 1 56.18 ? CGA HEM 600 B 1 HETATM 13 O O1A HEM . . . E 2 33.624 59.96 37.908 1 53.71 ? O1A HEM 600 B 1 HETATM 14 O O2A HEM . . . E 2 32.473 61.538 37.01 1 56.98 ? O2A HEM 600 B 1 HETATM 15 C C1B HEM . . . E 2 37.804 67.932 39.919 1 50.34 ? C1B HEM 600 B 1 HETATM 16 C C2B HEM . . . E 2 38.312 68.655 41.029 1 52.52 ? C2B HEM 600 B 1 HETATM 17 C C3B HEM . . . E 2 39.008 69.686 40.537 1 50.03 ? C3B HEM 600 B 1 HETATM 18 C C4B HEM . . . E 2 38.901 69.593 39.072 1 49.18 ? C4B HEM 600 B 1 HETATM 19 C CMB HEM . . . E 2 38.165 68.385 42.514 1 55.82 ? CMB HEM 600 B 1 HETATM 20 C CAB HEM . . . E 2 39.678 70.646 41.417 1 52.73 ? CAB HEM 600 B 1 HETATM 21 C CBB HEM . . . E 2 40.361 71.701 40.992 1 58.22 ? CBB HEM 600 B 1 HETATM 22 C C1C HEM . . . E 2 39.473 70.375 36.819 1 54.96 ? C1C HEM 600 B 1 HETATM 23 C C2C HEM . . . E 2 40.142 71.249 35.976 1 58.53 ? C2C HEM 600 B 1 HETATM 24 C C3C HEM . . . E 2 39.922 70.843 34.69 1 57.54 ? C3C HEM 600 B 1 HETATM 25 C C4C HEM . . . E 2 39.099 69.658 34.747 1 52.57 ? C4C HEM 600 B 1 HETATM 26 C CMC HEM . . . E 2 40.972 72.444 36.363 1 61.14 ? CMC HEM 600 B 1 HETATM 27 C CAC HEM . . . E 2 40.57 71.617 33.619 1 56.92 ? CAC HEM 600 B 1 HETATM 28 C CBC HEM . . . E 2 40.554 71.253 32.362 1 59.81 ? CBC HEM 600 B 1 HETATM 29 C C1D HEM . . . E 2 37.723 67.847 33.931 1 50.53 ? C1D HEM 600 B 1 HETATM 30 C C2D HEM . . . E 2 37.115 67.119 32.815 1 50.42 ? C2D HEM 600 B 1 HETATM 31 C C3D HEM . . . E 2 36.319 66.166 33.337 1 50.17 ? C3D HEM 600 B 1 HETATM 32 C C4D HEM . . . E 2 36.448 66.317 34.78 1 52.33 ? C4D HEM 600 B 1 HETATM 33 C CMD HEM . . . E 2 37.329 67.374 31.353 1 54.1 ? CMD HEM 600 B 1 HETATM 34 C CAD HEM . . . E 2 35.452 65.149 32.623 1 47.78 ? CAD HEM 600 B 1 HETATM 35 C CBD HEM . . . E 2 36.101 63.775 32.668 1 48.67 ? CBD HEM 600 B 1 HETATM 36 C CGD HEM . . . E 2 35.374 62.75 31.829 1 49.21 ? CGD HEM 600 B 1 HETATM 37 O O1D HEM . . . E 2 35.969 61.934 31.071 1 46.28 ? O1D HEM 600 B 1 HETATM 38 O O2D HEM . . . E 2 34.139 62.693 31.907 1 54.28 ? O2D HEM 600 B 1 HETATM 39 N NA HEM . . . E 2 36.662 66.408 37.698 1 56.27 ? NA HEM 600 B 1 HETATM 40 N NB HEM . . . E 2 38.189 68.507 38.786 1 50.68 ? NB HEM 600 B 1 HETATM 41 N NC HEM . . . E 2 38.834 69.44 36.07 1 52.71 ? NC HEM 600 B 1 HETATM 42 N ND HEM . . . E 2 37.306 67.298 35.084 1 53.21 ? ND HEM 600 B 1 HETATM 43 FE FE HEM . . . E 2 37.693 67.871 36.826 1 65.94 ? FE HEM 600 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #