data_4R1Z # _model_server_result.job_id 2hbOJ3H4_IQq0_0q653lSw _model_server_result.datetime_utc '2024-11-25 07:39:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4R1Z # _exptl.entry_id 4R1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.509 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Abiraterone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R1Z _cell.length_a 136.63 _cell.length_b 136.63 _cell.length_c 135.441 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 146 1_555 B SG CYS 66 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A SG CYS 373 A CYS 453 1_555 C FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 C FE HEM . A HEM 600 1_555 D N22 AER . A AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 B SG CYS 373 B CYS 453 1_555 E FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 E FE HEM . B HEM 600 1_555 F N22 AER . B AER 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C24 H31 N O' _chem_comp.formula_weight 349.509 _chem_comp.id AER _chem_comp.mon_nstd_flag . _chem_comp.name Abiraterone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,8R,9S,10R,13S,14S)-10,13-dimethyl-17-pyridin-3-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 H1 AER sing 1 n n C1 H1A AER sing 2 n n C2 C1 AER sing 3 n n C2 H2 AER sing 4 n n C2 H2A AER sing 5 n n C3 C2 AER sing 6 n n C3 H3 AER sing 7 n n O3 C3 AER sing 8 n n O3 HO3 AER sing 9 n n C4 C3 AER sing 10 n n C4 C5 AER sing 11 n n C4 H4 AER sing 12 n n C4 H4A AER sing 13 n n C5 C10 AER sing 14 n n C6 C5 AER doub 15 n n C6 C7 AER sing 16 n n C6 H6 AER sing 17 n n C7 C8 AER sing 18 n n C7 H7 AER sing 19 n n C7 H7A AER sing 20 n n C8 C14 AER sing 21 n n C8 C9 AER sing 22 n n C8 H8 AER sing 23 n n C9 C11 AER sing 24 n n C9 H9 AER sing 25 n n C10 C1 AER sing 26 n n C10 C9 AER sing 27 n n C11 C12 AER sing 28 n n C11 H11 AER sing 29 n n C11 H11A AER sing 30 n n C12 H12 AER sing 31 n n C12 H12A AER sing 32 n n C13 C12 AER sing 33 n n C13 C17 AER sing 34 n n C14 C13 AER sing 35 n n C14 H14 AER sing 36 n n C15 C14 AER sing 37 n n C15 C16 AER sing 38 n n C15 H15 AER sing 39 n n C15 H15A AER sing 40 n n C16 C17 AER doub 41 n n C16 H16 AER sing 42 n n C17 C20 AER sing 43 n n C18 C13 AER sing 44 n n C18 H18 AER sing 45 n n C18 H18A AER sing 46 n n C18 H18B AER sing 47 n n C19 C10 AER sing 48 n n C19 H19 AER sing 49 n n C19 H19A AER sing 50 n n C19 H19B AER sing 51 n n C20 C25 AER doub 52 n y C20 C21 AER sing 53 n y C21 N22 AER doub 54 n y C21 H21 AER sing 55 n n N22 C23 AER sing 56 n y C23 H23 AER sing 57 n n C24 C23 AER doub 58 n y C24 H24 AER sing 59 n n C25 C24 AER sing 60 n y C25 H25 AER sing 61 n n # _atom_sites.entry_id 4R1Z _atom_sites.fract_transf_matrix[1][1] 0.007319 _atom_sites.fract_transf_matrix[1][2] 0.004226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 600 600 HEM HEM . D 3 AER A 1 601 601 AER AER . E 2 HEM B 1 600 600 HEM HEM . F 3 AER B 1 601 601 AER AER . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 7 HOH HOH . G 4 HOH A 8 708 8 HOH HOH . G 4 HOH A 9 709 9 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 14 HOH HOH . G 4 HOH A 12 712 15 HOH HOH . H 4 HOH B 1 701 11 HOH HOH . H 4 HOH B 2 702 12 HOH HOH . H 4 HOH B 3 703 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AER . . . D 3 72.821 51.127 29.381 1 42.12 ? C1 AER 601 A 1 HETATM 2 C C2 AER . . . D 3 73.536 50.329 28.312 1 40.91 ? C2 AER 601 A 1 HETATM 3 C C3 AER . . . D 3 73.127 50.796 26.935 1 40.79 ? C3 AER 601 A 1 HETATM 4 O O3 AER . . . D 3 73.753 49.964 25.928 1 41.53 ? O3 AER 601 A 1 HETATM 5 C C4 AER . . . D 3 73.501 52.26 26.79 1 40.15 ? C4 AER 601 A 1 HETATM 6 C C5 AER . . . D 3 72.985 53.112 27.927 1 40.12 ? C5 AER 601 A 1 HETATM 7 C C6 AER . . . D 3 72.474 54.315 27.638 1 38.71 ? C6 AER 601 A 1 HETATM 8 C C7 AER . . . D 3 71.992 55.304 28.665 1 38.98 ? C7 AER 601 A 1 HETATM 9 C C8 AER . . . D 3 72.273 54.886 30.095 1 39.7 ? C8 AER 601 A 1 HETATM 10 C C9 AER . . . D 3 72.168 53.377 30.261 1 41.13 ? C9 AER 601 A 1 HETATM 11 C C10 AER . . . D 3 73.137 52.621 29.342 1 42.33 ? C10 AER 601 A 1 HETATM 12 C C11 AER . . . D 3 72.225 52.917 31.73 1 37.79 ? C11 AER 601 A 1 HETATM 13 C C12 AER . . . D 3 71.276 53.715 32.626 1 37.61 ? C12 AER 601 A 1 HETATM 14 C C13 AER . . . D 3 71.509 55.187 32.467 1 38.11 ? C13 AER 601 A 1 HETATM 15 C C14 AER . . . D 3 71.232 55.484 31.02 1 39.63 ? C14 AER 601 A 1 HETATM 16 C C15 AER . . . D 3 71.037 56.986 30.96 1 42.12 ? C15 AER 601 A 1 HETATM 17 C C16 AER . . . D 3 70.138 57.193 32.157 1 43.26 ? C16 AER 601 A 1 HETATM 18 C C17 AER . . . D 3 70.654 56.197 33.217 1 43.06 ? C17 AER 601 A 1 HETATM 19 C C18 AER . . . D 3 72.92 55.553 32.893 1 37.7 ? C18 AER 601 A 1 HETATM 20 C C19 AER . . . D 3 74.594 52.851 29.736 1 43.66 ? C19 AER 601 A 1 HETATM 21 C C20 AER . . . D 3 69.682 55.72 34.256 1 46.68 ? C20 AER 601 A 1 HETATM 22 C C21 AER . . . D 3 68.348 56.157 34.327 1 48.7 ? C21 AER 601 A 1 HETATM 23 N N22 AER . . . D 3 67.496 55.777 35.298 1 48.41 ? N22 AER 601 A 1 HETATM 24 C C23 AER . . . D 3 67.94 54.979 36.267 1 50.26 ? C23 AER 601 A 1 HETATM 25 C C24 AER . . . D 3 69.262 54.533 36.272 1 51.09 ? C24 AER 601 A 1 HETATM 26 C C25 AER . . . D 3 70.147 54.911 35.282 1 47.12 ? C25 AER 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #