data_4R20
#
_model_server_result.job_id            LH1MvvIyPsYgQhpLp_VpGw 
_model_server_result.datetime_utc      '2024-11-25 08:18:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    4R20 
#
_exptl.entry_id    4R20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.73 
_cell.angle_gamma         90 
_cell.entry_id            4R20 
_cell.length_a            57.01 
_cell.length_b            79.77 
_cell.length_c            95.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 227 A CYS 242 1_555 E HG HG . A HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc2 A O CYS 320 A CYS 335 1_555 F HG HG . A HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc3 A SG CYS 320 A CYS 335 1_555 F HG HG . A HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc4 A SG CYS 425 A CYS 440 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc5 A SG CYS 450 A CYS 465 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc6 A O PRO 451 A PRO 466 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? 
metalc ? metalc7 A O ALA 454 A ALA 469 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc8 A O SER 455 A SER 470 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc9 C FE HEM . A HEM 601 1_555 D N22 AER . A AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc10 B O CYS 320 B CYS 335 1_555 K HG HG . B HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? 
metalc ? metalc11 B SG CYS 425 B CYS 440 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc12 H FE HEM . B HEM 601 1_555 I N22 AER . B AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 190 n n 
CHA C4D HEM doub 191 n n 
CHA HHA HEM sing 192 n n 
CHB C4A HEM sing 193 n n 
CHB C1B HEM doub 194 n n 
CHB HHB HEM sing 195 n n 
CHC C4B HEM sing 196 n n 
CHC C1C HEM doub 197 n n 
CHC HHC HEM sing 198 n n 
CHD C4C HEM doub 199 n n 
CHD C1D HEM sing 200 n n 
CHD HHD HEM sing 201 n n 
C1A C2A HEM doub 202 n y 
C1A NA HEM sing 203 n y 
C2A C3A HEM sing 204 n y 
C2A CAA HEM sing 205 n n 
C3A C4A HEM doub 206 n y 
C3A CMA HEM sing 207 n n 
C4A NA HEM sing 208 n y 
CMA HMA HEM sing 209 n n 
CMA HMAA HEM sing 210 n n 
CMA HMAB HEM sing 211 n n 
CAA CBA HEM sing 212 n n 
CAA HAA HEM sing 213 n n 
CAA HAAA HEM sing 214 n n 
CBA CGA HEM sing 215 n n 
CBA HBA HEM sing 216 n n 
CBA HBAA HEM sing 217 n n 
CGA O1A HEM doub 218 n n 
CGA O2A HEM sing 219 n n 
C1B C2B HEM sing 220 n n 
C1B NB HEM sing 221 n n 
C2B C3B HEM doub 222 n n 
C2B CMB HEM sing 223 n n 
C3B C4B HEM sing 224 n n 
C3B CAB HEM sing 225 n n 
C4B NB HEM doub 226 n n 
CMB HMB HEM sing 227 n n 
CMB HMBA HEM sing 228 n n 
CMB HMBB HEM sing 229 n n 
CAB CBB HEM doub 230 n n 
CAB HAB HEM sing 231 n n 
CBB HBB HEM sing 232 n n 
CBB HBBA HEM sing 233 n n 
C1C C2C HEM sing 234 n y 
C1C NC HEM sing 235 n y 
C2C C3C HEM doub 236 n y 
C2C CMC HEM sing 237 n n 
C3C C4C HEM sing 238 n y 
C3C CAC HEM sing 239 n n 
C4C NC HEM sing 240 n y 
CMC HMC HEM sing 241 n n 
CMC HMCA HEM sing 242 n n 
CMC HMCB HEM sing 243 n n 
CAC CBC HEM doub 244 n n 
CAC HAC HEM sing 245 n n 
CBC HBC HEM sing 246 n n 
CBC HBCA HEM sing 247 n n 
C1D C2D HEM sing 248 n n 
C1D ND HEM doub 249 n n 
C2D C3D HEM doub 250 n n 
C2D CMD HEM sing 251 n n 
C3D C4D HEM sing 252 n n 
C3D CAD HEM sing 253 n n 
C4D ND HEM sing 254 n n 
CMD HMD HEM sing 255 n n 
CMD HMDA HEM sing 256 n n 
CMD HMDB HEM sing 257 n n 
CAD CBD HEM sing 258 n n 
CAD HAD HEM sing 259 n n 
CAD HADA HEM sing 260 n n 
CBD CGD HEM sing 261 n n 
CBD HBD HEM sing 262 n n 
CBD HBDA HEM sing 263 n n 
CGD O1D HEM doub 264 n n 
CGD O2D HEM sing 265 n n 
O2A H2A HEM sing 266 n n 
O2D H2D HEM sing 267 n n 
FE NA HEM sing 268 n n 
FE NB HEM sing 269 n n 
FE NC HEM sing 270 n n 
FE ND HEM sing 271 n n 
#
_atom_sites.entry_id                     4R20 
_atom_sites.fract_transf_matrix[1][1]    0.017541 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000836 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 600 HEM HEM . 
D 3 AER A 1 602 601 AER AER . 
E 4 HG A 1 603 1 HG HG . 
F 4 HG A 1 604 2 HG HG . 
G 4 HG A 1 605 3 HG HG . 
H 2 HEM B 1 601 600 HEM HEM . 
I 3 AER B 1 602 601 AER AER . 
J 4 HG B 1 603 4 HG HG . 
K 4 HG B 1 604 5 HG HG . 
L 5 HOH A 1 701 7 HOH HOH . 
L 5 HOH A 2 702 23 HOH HOH . 
L 5 HOH A 3 703 25 HOH HOH . 
M 5 HOH B 1 701 8 HOH HOH . 
M 5 HOH B 2 702 9 HOH HOH . 
M 5 HOH B 3 703 10 HOH HOH . 
M 5 HOH B 4 704 11 HOH HOH . 
M 5 HOH B 5 705 12 HOH HOH . 
M 5 HOH B 6 706 13 HOH HOH . 
M 5 HOH B 7 707 14 HOH HOH . 
M 5 HOH B 8 708 24 HOH HOH . 
M 5 HOH B 9 709 36 HOH HOH . 
M 5 HOH B 10 710 37 HOH HOH . 
M 5 HOH B 11 711 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 40.297 8.969 96.4 1 41.35 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . H 2 37.789 5.336 98.262 1 42.8 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . H 2 37.38 3.417 93.799 1 43.73 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . H 2 39.678 7.322 91.999 1 40.63 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . H 2 39.64 8.138 97.246 1 44.85 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . H 2 39.612 8.375 98.632 1 44.6 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . H 2 38.898 7.357 99.191 1 43.33 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . H 2 38.499 6.504 98.123 1 44.94 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . H 2 38.567 7.139 100.638 1 43.02 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . H 2 40.302 9.626 99.127 1 45.76 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . H 2 40.514 9.913 100.595 1 47.43 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . H 2 41.375 11.162 100.612 1 48.47 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . H 2 40.913 12.281 100.852 1 47.6 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . H 2 42.591 11.121 100.366 1 58.04 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . H 2 37.473 4.509 97.189 1 44.6 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . H 2 36.773 3.308 97.366 1 47.15 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . H 2 36.604 2.728 96.166 1 45.61 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . H 2 37.285 3.608 95.179 1 42.96 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . H 2 36.256 2.726 98.643 1 53.67 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . H 2 35.932 1.426 96.104 1 51.34 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . H 2 35.929 0.654 95.031 1 57.68 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . H 2 37.952 4.341 92.894 1 45.74 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . H 2 37.935 4.254 91.482 1 42.92 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . H 2 38.595 5.352 90.965 1 43.47 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . H 2 38.987 6.157 92.065 1 42.68 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . H 2 37.329 3.184 90.627 1 40.32 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . H 2 38.716 5.563 89.518 1 46.8 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . H 2 39.153 6.667 88.927 1 51.7 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . H 2 40.021 8.037 93.131 1 40.48 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . H 2 40.812 9.273 93.024 1 41.55 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . H 2 40.967 9.74 94.241 1 41.67 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . H 2 40.3 8.755 95.078 1 39.13 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . H 2 41.355 9.967 91.814 1 42.44 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . H 2 41.736 10.983 94.627 1 43.87 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . H 2 40.877 12.186 95.004 1 49.16 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . H 2 41.78 13.344 95.404 1 53.32 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . H 2 41.389 14.523 95.377 1 52.15 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . H 2 42.95 13.16 95.777 1 55.73 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . H 2 38.999 6.984 96.941 1 44.22 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . H 2 37.755 4.652 95.889 1 44.37 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . H 2 38.603 5.506 93.211 1 43.76 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . H 2 39.754 7.757 94.404 1 38.95 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . H 2 38.81 6.283 95.115 1 48.24 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#