data_4R20 # _model_server_result.job_id JyYQq1ykScA-_p6l1F-a-Q _model_server_result.datetime_utc '2024-10-12 12:25:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 4R20 # _exptl.entry_id 4R20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.509 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Abiraterone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.73 _cell.angle_gamma 90 _cell.entry_id 4R20 _cell.length_a 57.01 _cell.length_b 79.77 _cell.length_c 95.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 227 A CYS 242 1_555 E HG HG . A HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 A O CYS 320 A CYS 335 1_555 F HG HG . A HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 A SG CYS 320 A CYS 335 1_555 F HG HG . A HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc4 A SG CYS 425 A CYS 440 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 A SG CYS 450 A CYS 465 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc6 A O PRO 451 A PRO 466 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc7 A O ALA 454 A ALA 469 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc8 A O SER 455 A SER 470 1_555 G HG HG . A HG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc9 C FE HEM . A HEM 601 1_555 D N22 AER . A AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc10 B O CYS 320 B CYS 335 1_555 K HG HG . B HG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc11 B SG CYS 425 B CYS 440 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 H FE HEM . B HEM 601 1_555 I N22 AER . B AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? # _chem_comp.formula 'C24 H31 N O' _chem_comp.formula_weight 349.509 _chem_comp.id AER _chem_comp.mon_nstd_flag . _chem_comp.name Abiraterone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,8R,9S,10R,13S,14S)-10,13-dimethyl-17-pyridin-3-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 H1 AER sing 1 n n C1 H1A AER sing 2 n n C2 C1 AER sing 3 n n C2 H2 AER sing 4 n n C2 H2A AER sing 5 n n C3 C2 AER sing 6 n n C3 H3 AER sing 7 n n O3 C3 AER sing 8 n n O3 HO3 AER sing 9 n n C4 C3 AER sing 10 n n C4 C5 AER sing 11 n n C4 H4 AER sing 12 n n C4 H4A AER sing 13 n n C5 C10 AER sing 14 n n C6 C5 AER doub 15 n n C6 C7 AER sing 16 n n C6 H6 AER sing 17 n n C7 C8 AER sing 18 n n C7 H7 AER sing 19 n n C7 H7A AER sing 20 n n C8 C14 AER sing 21 n n C8 C9 AER sing 22 n n C8 H8 AER sing 23 n n C9 C11 AER sing 24 n n C9 H9 AER sing 25 n n C10 C1 AER sing 26 n n C10 C9 AER sing 27 n n C11 C12 AER sing 28 n n C11 H11 AER sing 29 n n C11 H11A AER sing 30 n n C12 H12 AER sing 31 n n C12 H12A AER sing 32 n n C13 C12 AER sing 33 n n C13 C17 AER sing 34 n n C14 C13 AER sing 35 n n C14 H14 AER sing 36 n n C15 C14 AER sing 37 n n C15 C16 AER sing 38 n n C15 H15 AER sing 39 n n C15 H15A AER sing 40 n n C16 C17 AER doub 41 n n C16 H16 AER sing 42 n n C17 C20 AER sing 43 n n C18 C13 AER sing 44 n n C18 H18 AER sing 45 n n C18 H18A AER sing 46 n n C18 H18B AER sing 47 n n C19 C10 AER sing 48 n n C19 H19 AER sing 49 n n C19 H19A AER sing 50 n n C19 H19B AER sing 51 n n C20 C25 AER doub 52 n y C20 C21 AER sing 53 n y C21 N22 AER doub 54 n y C21 H21 AER sing 55 n n N22 C23 AER sing 56 n y C23 H23 AER sing 57 n n C24 C23 AER doub 58 n y C24 H24 AER sing 59 n n C25 C24 AER sing 60 n y C25 H25 AER sing 61 n n # _atom_sites.entry_id 4R20 _atom_sites.fract_transf_matrix[1][1] 0.017541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000836 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 600 HEM HEM . D 3 AER A 1 602 601 AER AER . E 4 HG A 1 603 1 HG HG . F 4 HG A 1 604 2 HG HG . G 4 HG A 1 605 3 HG HG . H 2 HEM B 1 601 600 HEM HEM . I 3 AER B 1 602 601 AER AER . J 4 HG B 1 603 4 HG HG . K 4 HG B 1 604 5 HG HG . L 5 HOH A 1 701 7 HOH HOH . L 5 HOH A 2 702 23 HOH HOH . L 5 HOH A 3 703 25 HOH HOH . M 5 HOH B 1 701 8 HOH HOH . M 5 HOH B 2 702 9 HOH HOH . M 5 HOH B 3 703 10 HOH HOH . M 5 HOH B 4 704 11 HOH HOH . M 5 HOH B 5 705 12 HOH HOH . M 5 HOH B 6 706 13 HOH HOH . M 5 HOH B 7 707 14 HOH HOH . M 5 HOH B 8 708 24 HOH HOH . M 5 HOH B 9 709 36 HOH HOH . M 5 HOH B 10 710 37 HOH HOH . M 5 HOH B 11 711 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AER . . . I 3 48.143 1.857 90.886 1 68.65 ? C1 AER 602 B 1 HETATM 2 C C2 AER . . . I 3 49.188 1.35 89.873 1 74.84 ? C2 AER 602 B 1 HETATM 3 C C3 AER . . . I 3 49.427 2.345 88.715 1 74.34 ? C3 AER 602 B 1 HETATM 4 O O3 AER . . . I 3 50.299 1.816 87.678 1 67.91 ? O3 AER 602 B 1 HETATM 5 C C4 AER . . . I 3 49.864 3.703 89.25 1 69.94 ? C4 AER 602 B 1 HETATM 6 C C5 AER . . . I 3 48.803 4.194 90.217 1 65.93 ? C5 AER 602 B 1 HETATM 7 C C6 AER . . . I 3 48.327 5.431 90.05 1 66.6 ? C6 AER 602 B 1 HETATM 8 C C7 AER . . . I 3 47.407 6.113 91.032 1 65.49 ? C7 AER 602 B 1 HETATM 9 C C8 AER . . . I 3 47.123 5.312 92.287 1 60.85 ? C8 AER 602 B 1 HETATM 10 C C9 AER . . . I 3 47.055 3.832 91.974 1 63.08 ? C9 AER 602 B 1 HETATM 11 C C10 AER . . . I 3 48.377 3.304 91.37 1 65.93 ? C10 AER 602 B 1 HETATM 12 C C11 AER . . . I 3 46.534 3.031 93.194 1 61.05 ? C11 AER 602 B 1 HETATM 13 C C12 AER . . . I 3 45.278 3.571 93.907 1 59.76 ? C12 AER 602 B 1 HETATM 14 C C13 AER . . . I 3 45.409 5.055 94.188 1 58.07 ? C13 AER 602 B 1 HETATM 15 C C14 AER . . . I 3 45.75 5.658 92.83 1 60.21 ? C14 AER 602 B 1 HETATM 16 C C15 AER . . . I 3 45.379 7.13 92.928 1 61.24 ? C15 AER 602 B 1 HETATM 17 C C16 AER . . . I 3 44.01 6.998 93.552 1 58.29 ? C16 AER 602 B 1 HETATM 18 C C17 AER . . . I 3 44.204 5.931 94.644 1 59.08 ? C17 AER 602 B 1 HETATM 19 C C18 AER . . . I 3 46.501 5.243 95.248 1 57.19 ? C18 AER 602 B 1 HETATM 20 C C19 AER . . . I 3 49.536 3.337 92.374 1 60.23 ? C19 AER 602 B 1 HETATM 21 C C20 AER . . . I 3 42.911 5.331 95.133 1 58.71 ? C20 AER 602 B 1 HETATM 22 C C21 AER . . . I 3 41.657 5.833 94.755 1 61.9 ? C21 AER 602 B 1 HETATM 23 N N22 AER . . . I 3 40.491 5.355 95.21 1 59.73 ? N22 AER 602 B 1 HETATM 24 C C23 AER . . . I 3 40.562 4.365 96.094 1 60.03 ? C23 AER 602 B 1 HETATM 25 C C24 AER . . . I 3 41.762 3.846 96.535 1 56.83 ? C24 AER 602 B 1 HETATM 26 C C25 AER . . . I 3 42.95 4.326 96.065 1 54.47 ? C25 AER 602 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #