data_4R21 # _model_server_result.job_id JMRQ8GJjiSAwFMf3ZiB6sw _model_server_result.datetime_utc '2024-11-25 13:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 4R21 # _exptl.entry_id 4R21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.03 _cell.angle_gamma 90 _cell.entry_id 4R21 _cell.length_a 55.94 _cell.length_b 78.63 _cell.length_c 95.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 425 A CYS 440 1_555 C FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 B SG CYS 425 B CYS 440 1_555 E FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4R21 _atom_sites.fract_transf_matrix[1][1] 0.017876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 600 600 HEM HEM . D 3 STR A 1 601 601 STR STR . E 2 HEM B 1 600 600 HEM HEM . F 3 STR B 1 601 601 STR STR . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 17 HOH HOH . H 4 HOH B 1 701 7 HOH HOH . H 4 HOH B 2 702 8 HOH HOH . H 4 HOH B 3 703 9 HOH HOH . H 4 HOH B 4 704 10 HOH HOH . H 4 HOH B 5 705 11 HOH HOH . H 4 HOH B 6 706 12 HOH HOH . H 4 HOH B 7 707 13 HOH HOH . H 4 HOH B 8 708 14 HOH HOH . H 4 HOH B 9 709 15 HOH HOH . H 4 HOH B 10 710 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -14.107 11.318 48.334 1 25.87 ? CHA HEM 600 B 1 HETATM 2 C CHB HEM . . . E 2 -16.348 7.134 48.911 1 26.45 ? CHB HEM 600 B 1 HETATM 3 C CHC HEM . . . E 2 -16.623 6.618 44.173 1 25.06 ? CHC HEM 600 B 1 HETATM 4 C CHD HEM . . . E 2 -14.669 10.949 43.527 1 25.75 ? CHD HEM 600 B 1 HETATM 5 C C1A HEM . . . E 2 -14.675 10.223 48.914 1 26.33 ? C1A HEM 600 B 1 HETATM 6 C C2A HEM . . . E 2 -14.617 9.882 50.315 1 27.16 ? C2A HEM 600 B 1 HETATM 7 C C3A HEM . . . E 2 -15.261 8.699 50.436 1 27.02 ? C3A HEM 600 B 1 HETATM 8 C C4A HEM . . . E 2 -15.699 8.32 49.143 1 27.24 ? C4A HEM 600 B 1 HETATM 9 C CMA HEM . . . E 2 -15.51 7.905 51.696 1 26.29 ? CMA HEM 600 B 1 HETATM 10 C CAA HEM . . . E 2 -13.967 10.601 51.493 1 26.43 ? CAA HEM 600 B 1 HETATM 11 C CBA HEM . . . E 2 -14.402 12.042 51.716 1 26.87 ? CBA HEM 600 B 1 HETATM 12 C CGA HEM . . . E 2 -13.78 12.574 52.973 1 26.57 ? CGA HEM 600 B 1 HETATM 13 O O1A HEM . . . E 2 -14.493 13.169 53.807 1 30.06 ? O1A HEM 600 B 1 HETATM 14 O O2A HEM . . . E 2 -12.561 12.443 53.179 1 27.3 ? O2A HEM 600 B 1 HETATM 15 C C1B HEM . . . E 2 -16.586 6.63 47.67 1 25.15 ? C1B HEM 600 B 1 HETATM 16 C C2B HEM . . . E 2 -17.169 5.359 47.484 1 26.27 ? C2B HEM 600 B 1 HETATM 17 C C3B HEM . . . E 2 -17.272 5.176 46.15 1 27.84 ? C3B HEM 600 B 1 HETATM 18 C C4B HEM . . . E 2 -16.705 6.397 45.527 1 25.94 ? C4B HEM 600 B 1 HETATM 19 C CMB HEM . . . E 2 -17.647 4.343 48.488 1 25.53 ? CMB HEM 600 B 1 HETATM 20 C CAB HEM . . . E 2 -17.821 3.922 45.595 1 30.19 ? CAB HEM 600 B 1 HETATM 21 C CBB HEM . . . E 2 -17.765 3.573 44.32 1 31.39 ? CBB HEM 600 B 1 HETATM 22 C C1C HEM . . . E 2 -16.139 7.757 43.581 1 24.87 ? C1C HEM 600 B 1 HETATM 23 C C2C HEM . . . E 2 -16.136 7.977 42.214 1 25.86 ? C2C HEM 600 B 1 HETATM 24 C C3C HEM . . . E 2 -15.594 9.215 41.98 1 26.74 ? C3C HEM 600 B 1 HETATM 25 C C4C HEM . . . E 2 -15.265 9.754 43.262 1 25.92 ? C4C HEM 600 B 1 HETATM 26 C CMC HEM . . . E 2 -16.667 7.054 41.152 1 26.34 ? CMC HEM 600 B 1 HETATM 27 C CAC HEM . . . E 2 -15.456 9.736 40.596 1 28.89 ? CAC HEM 600 B 1 HETATM 28 C CBC HEM . . . E 2 -14.925 10.905 40.239 1 30.64 ? CBC HEM 600 B 1 HETATM 29 C C1D HEM . . . E 2 -14.354 11.339 44.821 1 25.57 ? C1D HEM 600 B 1 HETATM 30 C C2D HEM . . . E 2 -13.632 12.599 45.053 1 25.87 ? C2D HEM 600 B 1 HETATM 31 C C3D HEM . . . E 2 -13.479 12.696 46.392 1 26.02 ? C3D HEM 600 B 1 HETATM 32 C C4D HEM . . . E 2 -14.103 11.502 46.965 1 25.73 ? C4D HEM 600 B 1 HETATM 33 C CMD HEM . . . E 2 -13.149 13.587 44.018 1 24.74 ? CMD HEM 600 B 1 HETATM 34 C CAD HEM . . . E 2 -12.806 13.811 47.151 1 26.56 ? CAD HEM 600 B 1 HETATM 35 C CBD HEM . . . E 2 -13.854 14.688 47.853 1 26.98 ? CBD HEM 600 B 1 HETATM 36 C CGD HEM . . . E 2 -13.192 15.383 49.03 1 27.18 ? CGD HEM 600 B 1 HETATM 37 O O1D HEM . . . E 2 -12.925 16.607 49.004 1 26.09 ? O1D HEM 600 B 1 HETATM 38 N NA HEM . . . E 2 -15.311 9.233 48.214 1 25.67 ? NA HEM 600 B 1 HETATM 39 N NB HEM . . . E 2 -16.366 7.225 46.516 1 25.51 ? NB HEM 600 B 1 HETATM 40 N NC HEM . . . E 2 -15.621 8.834 44.198 1 24.62 ? NC HEM 600 B 1 HETATM 41 N ND HEM . . . E 2 -14.63 10.736 45.99 1 25.25 ? ND HEM 600 B 1 HETATM 42 FE FE HEM . . . E 2 -15.456 9.084 46.245 1 25.74 ? FE HEM 600 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #