data_4R21 # _model_server_result.job_id zzr5Tu-ACCx7UZbhHxqTzw _model_server_result.datetime_utc '2024-11-29 04:15:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4R21 # _exptl.entry_id 4R21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.03 _cell.angle_gamma 90 _cell.entry_id 4R21 _cell.length_a 55.94 _cell.length_b 78.63 _cell.length_c 95.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 425 A CYS 440 1_555 C FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 B SG CYS 425 B CYS 440 1_555 E FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 372 n n C1 C10 STR sing 373 n n C1 H11 STR sing 374 n n C1 H12 STR sing 375 n n C2 C3 STR sing 376 n n C2 H21 STR sing 377 n n C2 H22 STR sing 378 n n C3 O3 STR doub 379 n n C3 C4 STR sing 380 n n C4 C5 STR doub 381 n n C4 H4 STR sing 382 n n C5 C6 STR sing 383 n n C5 C10 STR sing 384 n n C6 C7 STR sing 385 n n C6 H61 STR sing 386 n n C6 H62 STR sing 387 n n C7 C8 STR sing 388 n n C7 H71 STR sing 389 n n C7 H72 STR sing 390 n n C8 C9 STR sing 391 n n C8 C14 STR sing 392 n n C8 H8 STR sing 393 n n C9 C10 STR sing 394 n n C9 C11 STR sing 395 n n C9 H9 STR sing 396 n n C10 C19 STR sing 397 n n C11 C12 STR sing 398 n n C11 H111 STR sing 399 n n C11 H112 STR sing 400 n n C12 C13 STR sing 401 n n C12 H121 STR sing 402 n n C12 H122 STR sing 403 n n C13 C14 STR sing 404 n n C13 C17 STR sing 405 n n C13 C18 STR sing 406 n n C14 C15 STR sing 407 n n C14 H14 STR sing 408 n n C15 C16 STR sing 409 n n C15 H151 STR sing 410 n n C15 H152 STR sing 411 n n C16 C17 STR sing 412 n n C16 H161 STR sing 413 n n C16 H162 STR sing 414 n n C17 C20 STR sing 415 n n C17 H17 STR sing 416 n n C18 H181 STR sing 417 n n C18 H182 STR sing 418 n n C18 H183 STR sing 419 n n C19 H191 STR sing 420 n n C19 H192 STR sing 421 n n C19 H193 STR sing 422 n n C20 O20 STR doub 423 n n C20 C21 STR sing 424 n n C21 H211 STR sing 425 n n C21 H212 STR sing 426 n n C21 H213 STR sing 427 n n # _atom_sites.entry_id 4R21 _atom_sites.fract_transf_matrix[1][1] 0.017876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 600 600 HEM HEM . D 3 STR A 1 601 601 STR STR . E 2 HEM B 1 600 600 HEM HEM . F 3 STR B 1 601 601 STR STR . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 17 HOH HOH . H 4 HOH B 1 701 7 HOH HOH . H 4 HOH B 2 702 8 HOH HOH . H 4 HOH B 3 703 9 HOH HOH . H 4 HOH B 4 704 10 HOH HOH . H 4 HOH B 5 705 11 HOH HOH . H 4 HOH B 6 706 12 HOH HOH . H 4 HOH B 7 707 13 HOH HOH . H 4 HOH B 8 708 14 HOH HOH . H 4 HOH B 9 709 15 HOH HOH . H 4 HOH B 10 710 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . D 3 4.088 0.207 2.108 1 45.69 ? C1 STR 601 A 1 HETATM 2 C C2 STR . . . D 3 3.259 -0.31 3.266 1 44.77 ? C2 STR 601 A 1 HETATM 3 C C3 STR . . . D 3 3.023 0.625 4.243 1 43.63 ? C3 STR 601 A 1 HETATM 4 O O3 STR . . . D 3 2.713 0.237 5.369 1 47.02 ? O3 STR 601 A 1 HETATM 5 C C4 STR . . . D 3 3.101 1.986 3.993 1 42.76 ? C4 STR 601 A 1 HETATM 6 C C5 STR . . . D 3 3.502 2.514 2.76 1 44.16 ? C5 STR 601 A 1 HETATM 7 C C6 STR . . . D 3 3.569 3.912 2.623 1 42.89 ? C6 STR 601 A 1 HETATM 8 C C7 STR . . . D 3 4.946 4.366 2.206 1 42.72 ? C7 STR 601 A 1 HETATM 9 C C8 STR . . . D 3 5.332 3.674 0.933 1 42.87 ? C8 STR 601 A 1 HETATM 10 C C9 STR . . . D 3 5.203 2.162 1.085 1 43.28 ? C9 STR 601 A 1 HETATM 11 C C10 STR . . . D 3 3.833 1.688 1.653 1 44.59 ? C10 STR 601 A 1 HETATM 12 C C11 STR . . . D 3 5.569 1.427 -0.269 1 44.48 ? C11 STR 601 A 1 HETATM 13 C C12 STR . . . D 3 7.001 1.804 -0.648 1 44.07 ? C12 STR 601 A 1 HETATM 14 C C13 STR . . . D 3 7.124 3.307 -0.801 1 44.3 ? C13 STR 601 A 1 HETATM 15 C C14 STR . . . D 3 6.832 3.889 0.581 1 43.91 ? C14 STR 601 A 1 HETATM 16 C C15 STR . . . D 3 7.321 5.315 0.474 1 45.03 ? C15 STR 601 A 1 HETATM 17 C C16 STR . . . D 3 8.54 5.23 -0.5 1 44.97 ? C16 STR 601 A 1 HETATM 18 C C17 STR . . . D 3 8.571 3.793 -1.061 1 45.82 ? C17 STR 601 A 1 HETATM 19 C C18 STR . . . D 3 6.166 3.798 -1.902 1 45.41 ? C18 STR 601 A 1 HETATM 20 C C19 STR . . . D 3 2.724 1.742 0.582 1 43.24 ? C19 STR 601 A 1 HETATM 21 C C20 STR . . . D 3 9.065 3.667 -2.561 1 50.75 ? C20 STR 601 A 1 HETATM 22 O O20 STR . . . D 3 9.841 2.764 -2.884 1 51.96 ? O20 STR 601 A 1 HETATM 23 C C21 STR . . . D 3 8.563 4.65 -3.667 1 51.91 ? C21 STR 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #