data_4R26 # _model_server_result.job_id ql3Mp9oQzEBjqnSYtvvhjA _model_server_result.datetime_utc '2024-10-18 20:27:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4R26 # _exptl.entry_id 4R26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.67 _cell.angle_gamma 90 _cell.entry_id 4R26 _cell.length_a 62.686 _cell.length_b 40.331 _cell.length_c 84.457 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 L CYS 23 1_555 A SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 136 L CYS 134 1_555 A SG CYS 195 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 159 H CYS 140 1_555 B SG CYS 215 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4R26 _atom_sites.fract_transf_matrix[1][1] 0.015953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 301 GOL GOL . D 3 GOL L 1 302 302 GOL GOL . E 3 GOL L 1 303 304 GOL GOL . F 4 HOH L 1 401 401 HOH HOH . F 4 HOH L 2 402 402 HOH HOH . F 4 HOH L 3 403 403 HOH HOH . F 4 HOH L 4 404 404 HOH HOH . F 4 HOH L 5 405 405 HOH HOH . F 4 HOH L 6 406 406 HOH HOH . F 4 HOH L 7 407 407 HOH HOH . F 4 HOH L 8 408 408 HOH HOH . F 4 HOH L 9 409 409 HOH HOH . F 4 HOH L 10 410 410 HOH HOH . F 4 HOH L 11 411 411 HOH HOH . F 4 HOH L 12 412 412 HOH HOH . F 4 HOH L 13 413 414 HOH HOH . F 4 HOH L 14 414 415 HOH HOH . F 4 HOH L 15 415 416 HOH HOH . F 4 HOH L 16 416 417 HOH HOH . F 4 HOH L 17 417 418 HOH HOH . F 4 HOH L 18 418 419 HOH HOH . F 4 HOH L 19 419 420 HOH HOH . F 4 HOH L 20 420 421 HOH HOH . F 4 HOH L 21 421 422 HOH HOH . F 4 HOH L 22 422 423 HOH HOH . F 4 HOH L 23 423 424 HOH HOH . F 4 HOH L 24 424 425 HOH HOH . F 4 HOH L 25 425 426 HOH HOH . F 4 HOH L 26 426 427 HOH HOH . F 4 HOH L 27 427 428 HOH HOH . F 4 HOH L 28 428 429 HOH HOH . F 4 HOH L 29 429 430 HOH HOH . F 4 HOH L 30 430 431 HOH HOH . F 4 HOH L 31 431 432 HOH HOH . F 4 HOH L 32 432 433 HOH HOH . F 4 HOH L 33 433 434 HOH HOH . F 4 HOH L 34 434 435 HOH HOH . F 4 HOH L 35 435 436 HOH HOH . F 4 HOH L 36 436 437 HOH HOH . F 4 HOH L 37 437 438 HOH HOH . F 4 HOH L 38 438 439 HOH HOH . F 4 HOH L 39 439 440 HOH HOH . F 4 HOH L 40 440 441 HOH HOH . F 4 HOH L 41 441 442 HOH HOH . F 4 HOH L 42 442 443 HOH HOH . F 4 HOH L 43 443 444 HOH HOH . F 4 HOH L 44 444 445 HOH HOH . F 4 HOH L 45 445 446 HOH HOH . F 4 HOH L 46 446 447 HOH HOH . F 4 HOH L 47 447 448 HOH HOH . F 4 HOH L 48 448 449 HOH HOH . F 4 HOH L 49 449 450 HOH HOH . F 4 HOH L 50 450 451 HOH HOH . F 4 HOH L 51 451 452 HOH HOH . G 4 HOH H 1 301 413 HOH HOH . G 4 HOH H 2 302 301 HOH HOH . G 4 HOH H 3 303 302 HOH HOH . G 4 HOH H 4 304 303 HOH HOH . G 4 HOH H 5 305 304 HOH HOH . G 4 HOH H 6 306 305 HOH HOH . G 4 HOH H 7 307 307 HOH HOH . G 4 HOH H 8 308 308 HOH HOH . G 4 HOH H 9 309 309 HOH HOH . G 4 HOH H 10 310 310 HOH HOH . G 4 HOH H 11 311 311 HOH HOH . G 4 HOH H 12 312 312 HOH HOH . G 4 HOH H 13 313 313 HOH HOH . G 4 HOH H 14 314 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -40.216 -18.834 34.498 1 30.6 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . C 3 -39.961 -17.983 33.397 1 36.19 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . C 3 -39.786 -18.086 35.724 1 29.87 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . C 3 -40.279 -18.756 36.837 1 35.45 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . C 3 -38.286 -18.011 35.846 1 31.65 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . C 3 -37.898 -16.837 36.542 1 24.26 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #