data_4R29 # _model_server_result.job_id WWGL6iakLnKzE280AVBJfg _model_server_result.datetime_utc '2024-11-04 22:45:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":303}' # _entry.id 4R29 # _exptl.entry_id 4R29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.11 _cell.angle_gamma 90 _cell.entry_id 4R29 _cell.length_a 134.304 _cell.length_b 53.976 _cell.length_c 134.794 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N 1 1 B,G,H,O 2 1 C,I,J,K,P 3 1 D,L,M,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 4R29 _atom_sites.fract_transf_matrix[1][1] 0.007446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAM A 1 301 1225 SAM SAM . F 3 GOL A 1 302 1226 GOL GOL . G 2 SAM B 1 301 1225 SAM SAM . H 4 CIT B 1 302 302 CIT CIT . I 2 SAM C 1 301 1225 SAM SAM . J 4 CIT C 1 302 1226 CIT CIT . K 3 GOL C 1 303 1227 GOL GOL . L 2 SAM D 1 301 1225 SAM SAM . M 3 GOL D 1 302 1226 GOL GOL . N 5 HOH A 1 401 1227 HOH HOH . N 5 HOH A 2 402 1228 HOH HOH . N 5 HOH A 3 403 1229 HOH HOH . N 5 HOH A 4 404 1230 HOH HOH . N 5 HOH A 5 405 1231 HOH HOH . N 5 HOH A 6 406 1232 HOH HOH . N 5 HOH A 7 407 1233 HOH HOH . N 5 HOH A 8 408 1234 HOH HOH . N 5 HOH A 9 409 1235 HOH HOH . N 5 HOH A 10 410 1236 HOH HOH . N 5 HOH A 11 411 1237 HOH HOH . N 5 HOH A 12 412 1238 HOH HOH . N 5 HOH A 13 413 1239 HOH HOH . N 5 HOH A 14 414 1240 HOH HOH . N 5 HOH A 15 415 1241 HOH HOH . N 5 HOH A 16 416 1242 HOH HOH . N 5 HOH A 17 417 1243 HOH HOH . N 5 HOH A 18 418 1244 HOH HOH . N 5 HOH A 19 419 1245 HOH HOH . N 5 HOH A 20 420 1246 HOH HOH . N 5 HOH A 21 421 1247 HOH HOH . N 5 HOH A 22 422 1248 HOH HOH . N 5 HOH A 23 423 1249 HOH HOH . N 5 HOH A 24 424 1250 HOH HOH . N 5 HOH A 25 425 1251 HOH HOH . N 5 HOH A 26 426 1252 HOH HOH . N 5 HOH A 27 427 1253 HOH HOH . N 5 HOH A 28 428 1254 HOH HOH . N 5 HOH A 29 429 1255 HOH HOH . N 5 HOH A 30 430 1256 HOH HOH . N 5 HOH A 31 431 1257 HOH HOH . N 5 HOH A 32 432 1258 HOH HOH . N 5 HOH A 33 433 1259 HOH HOH . N 5 HOH A 34 434 1260 HOH HOH . N 5 HOH A 35 435 1261 HOH HOH . N 5 HOH A 36 436 1262 HOH HOH . N 5 HOH A 37 437 1263 HOH HOH . N 5 HOH A 38 438 1264 HOH HOH . N 5 HOH A 39 439 1265 HOH HOH . N 5 HOH A 40 440 1266 HOH HOH . N 5 HOH A 41 441 1267 HOH HOH . N 5 HOH A 42 442 1268 HOH HOH . N 5 HOH A 43 443 1269 HOH HOH . N 5 HOH A 44 444 1270 HOH HOH . N 5 HOH A 45 445 1271 HOH HOH . N 5 HOH A 46 446 1272 HOH HOH . N 5 HOH A 47 447 1273 HOH HOH . N 5 HOH A 48 448 1274 HOH HOH . N 5 HOH A 49 449 1275 HOH HOH . N 5 HOH A 50 450 1276 HOH HOH . N 5 HOH A 51 451 1277 HOH HOH . N 5 HOH A 52 452 1278 HOH HOH . N 5 HOH A 53 453 1279 HOH HOH . N 5 HOH A 54 454 1280 HOH HOH . N 5 HOH A 55 455 1281 HOH HOH . N 5 HOH A 56 456 1282 HOH HOH . N 5 HOH A 57 457 1283 HOH HOH . N 5 HOH A 58 458 1284 HOH HOH . N 5 HOH A 59 459 1285 HOH HOH . N 5 HOH A 60 460 1286 HOH HOH . N 5 HOH A 61 461 1287 HOH HOH . N 5 HOH A 62 462 1288 HOH HOH . N 5 HOH A 63 463 1289 HOH HOH . N 5 HOH A 64 464 1290 HOH HOH . N 5 HOH A 65 465 1291 HOH HOH . N 5 HOH A 66 466 1292 HOH HOH . N 5 HOH A 67 467 1293 HOH HOH . N 5 HOH A 68 468 1294 HOH HOH . N 5 HOH A 69 469 1295 HOH HOH . N 5 HOH A 70 470 1296 HOH HOH . N 5 HOH A 71 471 1297 HOH HOH . N 5 HOH A 72 472 1298 HOH HOH . N 5 HOH A 73 473 1299 HOH HOH . N 5 HOH A 74 474 1300 HOH HOH . N 5 HOH A 75 475 1301 HOH HOH . N 5 HOH A 76 476 1302 HOH HOH . N 5 HOH A 77 477 1303 HOH HOH . N 5 HOH A 78 478 1304 HOH HOH . N 5 HOH A 79 479 1305 HOH HOH . N 5 HOH A 80 480 1306 HOH HOH . N 5 HOH A 81 481 1307 HOH HOH . N 5 HOH A 82 482 1308 HOH HOH . N 5 HOH A 83 483 1309 HOH HOH . N 5 HOH A 84 484 1310 HOH HOH . N 5 HOH A 85 485 1311 HOH HOH . N 5 HOH A 86 486 1312 HOH HOH . O 5 HOH B 1 401 1227 HOH HOH . O 5 HOH B 2 402 1228 HOH HOH . O 5 HOH B 3 403 1229 HOH HOH . O 5 HOH B 4 404 1230 HOH HOH . O 5 HOH B 5 405 1231 HOH HOH . O 5 HOH B 6 406 1232 HOH HOH . O 5 HOH B 7 407 1233 HOH HOH . O 5 HOH B 8 408 1234 HOH HOH . O 5 HOH B 9 409 1235 HOH HOH . O 5 HOH B 10 410 1236 HOH HOH . O 5 HOH B 11 411 1237 HOH HOH . O 5 HOH B 12 412 1238 HOH HOH . O 5 HOH B 13 413 1239 HOH HOH . O 5 HOH B 14 414 1240 HOH HOH . O 5 HOH B 15 415 1241 HOH HOH . O 5 HOH B 16 416 1242 HOH HOH . O 5 HOH B 17 417 1243 HOH HOH . O 5 HOH B 18 418 1244 HOH HOH . O 5 HOH B 19 419 1245 HOH HOH . O 5 HOH B 20 420 1246 HOH HOH . O 5 HOH B 21 421 1247 HOH HOH . O 5 HOH B 22 422 1248 HOH HOH . O 5 HOH B 23 423 1249 HOH HOH . O 5 HOH B 24 424 1250 HOH HOH . O 5 HOH B 25 425 1251 HOH HOH . O 5 HOH B 26 426 1252 HOH HOH . O 5 HOH B 27 427 1253 HOH HOH . O 5 HOH B 28 428 1254 HOH HOH . O 5 HOH B 29 429 1255 HOH HOH . O 5 HOH B 30 430 1256 HOH HOH . O 5 HOH B 31 431 1257 HOH HOH . O 5 HOH B 32 432 1258 HOH HOH . O 5 HOH B 33 433 1259 HOH HOH . O 5 HOH B 34 434 1260 HOH HOH . O 5 HOH B 35 435 1261 HOH HOH . O 5 HOH B 36 436 1262 HOH HOH . O 5 HOH B 37 437 1263 HOH HOH . O 5 HOH B 38 438 1264 HOH HOH . O 5 HOH B 39 439 1265 HOH HOH . O 5 HOH B 40 440 1266 HOH HOH . O 5 HOH B 41 441 1267 HOH HOH . O 5 HOH B 42 442 1268 HOH HOH . O 5 HOH B 43 443 1269 HOH HOH . O 5 HOH B 44 444 1270 HOH HOH . O 5 HOH B 45 445 1271 HOH HOH . O 5 HOH B 46 446 1272 HOH HOH . O 5 HOH B 47 447 1273 HOH HOH . O 5 HOH B 48 448 1274 HOH HOH . O 5 HOH B 49 449 1275 HOH HOH . O 5 HOH B 50 450 1276 HOH HOH . O 5 HOH B 51 451 1277 HOH HOH . O 5 HOH B 52 452 1278 HOH HOH . O 5 HOH B 53 453 1279 HOH HOH . O 5 HOH B 54 454 1280 HOH HOH . O 5 HOH B 55 455 1281 HOH HOH . O 5 HOH B 56 456 1282 HOH HOH . O 5 HOH B 57 457 1283 HOH HOH . O 5 HOH B 58 458 1284 HOH HOH . O 5 HOH B 59 459 1285 HOH HOH . O 5 HOH B 60 460 1286 HOH HOH . O 5 HOH B 61 461 1287 HOH HOH . O 5 HOH B 62 462 1288 HOH HOH . O 5 HOH B 63 463 1289 HOH HOH . O 5 HOH B 64 464 1290 HOH HOH . O 5 HOH B 65 465 1291 HOH HOH . O 5 HOH B 66 466 1292 HOH HOH . O 5 HOH B 67 467 1293 HOH HOH . O 5 HOH B 68 468 1294 HOH HOH . O 5 HOH B 69 469 1295 HOH HOH . O 5 HOH B 70 470 1296 HOH HOH . O 5 HOH B 71 471 1297 HOH HOH . O 5 HOH B 72 472 1298 HOH HOH . O 5 HOH B 73 473 1299 HOH HOH . O 5 HOH B 74 474 1300 HOH HOH . O 5 HOH B 75 475 1301 HOH HOH . O 5 HOH B 76 476 1302 HOH HOH . O 5 HOH B 77 477 1303 HOH HOH . O 5 HOH B 78 478 1304 HOH HOH . O 5 HOH B 79 479 1305 HOH HOH . O 5 HOH B 80 480 1306 HOH HOH . O 5 HOH B 81 481 1307 HOH HOH . O 5 HOH B 82 482 1308 HOH HOH . O 5 HOH B 83 483 1309 HOH HOH . O 5 HOH B 84 484 1310 HOH HOH . O 5 HOH B 85 485 1311 HOH HOH . O 5 HOH B 86 486 1312 HOH HOH . O 5 HOH B 87 487 1313 HOH HOH . P 5 HOH C 1 401 1228 HOH HOH . P 5 HOH C 2 402 1229 HOH HOH . P 5 HOH C 3 403 1230 HOH HOH . P 5 HOH C 4 404 1231 HOH HOH . P 5 HOH C 5 405 1232 HOH HOH . P 5 HOH C 6 406 1233 HOH HOH . P 5 HOH C 7 407 1234 HOH HOH . P 5 HOH C 8 408 1235 HOH HOH . P 5 HOH C 9 409 1236 HOH HOH . P 5 HOH C 10 410 1237 HOH HOH . P 5 HOH C 11 411 1238 HOH HOH . P 5 HOH C 12 412 1239 HOH HOH . P 5 HOH C 13 413 1240 HOH HOH . P 5 HOH C 14 414 1241 HOH HOH . P 5 HOH C 15 415 1242 HOH HOH . P 5 HOH C 16 416 1243 HOH HOH . P 5 HOH C 17 417 1244 HOH HOH . P 5 HOH C 18 418 1245 HOH HOH . P 5 HOH C 19 419 1246 HOH HOH . P 5 HOH C 20 420 1247 HOH HOH . P 5 HOH C 21 421 1248 HOH HOH . P 5 HOH C 22 422 1249 HOH HOH . P 5 HOH C 23 423 1250 HOH HOH . P 5 HOH C 24 424 1251 HOH HOH . P 5 HOH C 25 425 1252 HOH HOH . P 5 HOH C 26 426 1253 HOH HOH . P 5 HOH C 27 427 1254 HOH HOH . P 5 HOH C 28 428 1255 HOH HOH . P 5 HOH C 29 429 1256 HOH HOH . P 5 HOH C 30 430 1257 HOH HOH . P 5 HOH C 31 431 1258 HOH HOH . P 5 HOH C 32 432 1259 HOH HOH . P 5 HOH C 33 433 1260 HOH HOH . P 5 HOH C 34 434 1261 HOH HOH . P 5 HOH C 35 435 1262 HOH HOH . P 5 HOH C 36 436 1263 HOH HOH . P 5 HOH C 37 437 1264 HOH HOH . P 5 HOH C 38 438 1265 HOH HOH . P 5 HOH C 39 439 1266 HOH HOH . P 5 HOH C 40 440 1267 HOH HOH . P 5 HOH C 41 441 1268 HOH HOH . P 5 HOH C 42 442 1269 HOH HOH . P 5 HOH C 43 443 1270 HOH HOH . P 5 HOH C 44 444 1271 HOH HOH . P 5 HOH C 45 445 1272 HOH HOH . P 5 HOH C 46 446 1273 HOH HOH . P 5 HOH C 47 447 1274 HOH HOH . P 5 HOH C 48 448 1275 HOH HOH . P 5 HOH C 49 449 1276 HOH HOH . P 5 HOH C 50 450 1277 HOH HOH . P 5 HOH C 51 451 1278 HOH HOH . P 5 HOH C 52 452 1279 HOH HOH . P 5 HOH C 53 453 1280 HOH HOH . P 5 HOH C 54 454 1281 HOH HOH . P 5 HOH C 55 455 1282 HOH HOH . P 5 HOH C 56 456 1283 HOH HOH . P 5 HOH C 57 457 1284 HOH HOH . P 5 HOH C 58 458 1285 HOH HOH . P 5 HOH C 59 459 1286 HOH HOH . P 5 HOH C 60 460 1287 HOH HOH . P 5 HOH C 61 461 1288 HOH HOH . P 5 HOH C 62 462 1289 HOH HOH . P 5 HOH C 63 463 1291 HOH HOH . P 5 HOH C 64 464 1292 HOH HOH . P 5 HOH C 65 465 1293 HOH HOH . P 5 HOH C 66 466 1294 HOH HOH . P 5 HOH C 67 467 1295 HOH HOH . P 5 HOH C 68 468 1296 HOH HOH . P 5 HOH C 69 469 1297 HOH HOH . P 5 HOH C 70 470 1298 HOH HOH . Q 5 HOH D 1 401 1290 HOH HOH . Q 5 HOH D 2 402 1227 HOH HOH . Q 5 HOH D 3 403 1228 HOH HOH . Q 5 HOH D 4 404 1229 HOH HOH . Q 5 HOH D 5 405 1230 HOH HOH . Q 5 HOH D 6 406 1231 HOH HOH . Q 5 HOH D 7 407 1232 HOH HOH . Q 5 HOH D 8 408 1233 HOH HOH . Q 5 HOH D 9 409 1234 HOH HOH . Q 5 HOH D 10 410 1235 HOH HOH . Q 5 HOH D 11 411 1236 HOH HOH . Q 5 HOH D 12 412 1237 HOH HOH . Q 5 HOH D 13 413 1238 HOH HOH . Q 5 HOH D 14 414 1239 HOH HOH . Q 5 HOH D 15 415 1240 HOH HOH . Q 5 HOH D 16 416 1241 HOH HOH . Q 5 HOH D 17 417 1242 HOH HOH . Q 5 HOH D 18 418 1243 HOH HOH . Q 5 HOH D 19 419 1244 HOH HOH . Q 5 HOH D 20 420 1245 HOH HOH . Q 5 HOH D 21 421 1246 HOH HOH . Q 5 HOH D 22 422 1247 HOH HOH . Q 5 HOH D 23 423 1248 HOH HOH . Q 5 HOH D 24 424 1249 HOH HOH . Q 5 HOH D 25 425 1250 HOH HOH . Q 5 HOH D 26 426 1251 HOH HOH . Q 5 HOH D 27 427 1252 HOH HOH . Q 5 HOH D 28 428 1253 HOH HOH . Q 5 HOH D 29 429 1254 HOH HOH . Q 5 HOH D 30 430 1255 HOH HOH . Q 5 HOH D 31 431 1256 HOH HOH . Q 5 HOH D 32 432 1257 HOH HOH . Q 5 HOH D 33 433 1258 HOH HOH . Q 5 HOH D 34 434 1259 HOH HOH . Q 5 HOH D 35 435 1260 HOH HOH . Q 5 HOH D 36 436 1261 HOH HOH . Q 5 HOH D 37 437 1262 HOH HOH . Q 5 HOH D 38 438 1263 HOH HOH . Q 5 HOH D 39 439 1264 HOH HOH . Q 5 HOH D 40 440 1265 HOH HOH . Q 5 HOH D 41 441 1266 HOH HOH . Q 5 HOH D 42 442 1267 HOH HOH . Q 5 HOH D 43 443 1268 HOH HOH . Q 5 HOH D 44 444 1269 HOH HOH . Q 5 HOH D 45 445 1270 HOH HOH . Q 5 HOH D 46 446 1271 HOH HOH . Q 5 HOH D 47 447 1272 HOH HOH . Q 5 HOH D 48 448 1273 HOH HOH . Q 5 HOH D 49 449 1274 HOH HOH . Q 5 HOH D 50 450 1275 HOH HOH . Q 5 HOH D 51 451 1276 HOH HOH . Q 5 HOH D 52 452 1277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 22.112 23.405 25.221 1 38.75 ? C1 GOL 303 C 1 HETATM 2 O O1 GOL . . . K 3 22.513 23.388 26.586 1 41.17 ? O1 GOL 303 C 1 HETATM 3 C C2 GOL . . . K 3 23.368 23.644 24.393 1 42.83 ? C2 GOL 303 C 1 HETATM 4 O O2 GOL . . . K 3 23.011 23.95 23.03 1 34.08 ? O2 GOL 303 C 1 HETATM 5 C C3 GOL . . . K 3 24.128 24.803 25.06 1 37.27 ? C3 GOL 303 C 1 HETATM 6 O O3 GOL . . . K 3 25.371 24.999 24.37 1 37.88 ? O3 GOL 303 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #