data_4R2D # _model_server_result.job_id bSQ6rdxIG-OalI2q9qquuA _model_server_result.datetime_utc '2024-11-04 22:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4R2D # _exptl.entry_id 4R2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R2D _cell.length_a 43.948 _cell.length_b 55.912 _cell.length_c 127.921 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 8 B DG 8 1_555 B P 5FC 9 B 5FC 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 B O3' DG 8 B DG 8 1_555 B P 5FC 9 B 5FC 9 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale3 B O3' 5FC 9 B 5FC 9 1_555 B P DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale4 C O3' DA 2 C DA 2 1_555 C P 5FC 3 C 5FC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale5 C O3' 5FC 3 C 5FC 3 1_555 C P DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A SG CYS 11 A CYS 340 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 16 A CYS 345 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A NE2 HIS 29 A HIS 358 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 33 A HIS 362 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A SG CYS 41 A CYS 370 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 A SG CYS 44 A CYS 373 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 A NE2 HIS 57 A HIS 386 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc8 A NE2 HIS 61 A HIS 390 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 A SG CYS 69 A CYS 398 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 A SG CYS 72 A CYS 401 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 A NE2 HIS 85 A HIS 414 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc12 A NE2 HIS 89 A HIS 418 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? hydrog WATSON-CRICK hydrog1 B N1 DG 2 B DG 2 1_555 C N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 2 B DG 2 1_555 C O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 2 B DG 2 1_555 C N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 3 B DC 3 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 3 B DC 3 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 3 B DC 3 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 4 B DG 4 1_555 C N3 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 4 B DG 4 1_555 C O2 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 4 B DG 4 1_555 C N4 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 5 B DT 5 1_555 C N1 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 5 B DT 5 1_555 C N6 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 6 B DG 6 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 6 B DG 6 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 6 B DG 6 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 7 B DG 7 1_555 C N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 7 B DG 7 1_555 C O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 7 B DG 7 1_555 C N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 8 B DG 8 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 DG 8 B DG 8 1_555 C O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 DG 8 B DG 8 1_555 C N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 5FC 9 B 5FC 9 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 5FC 9 B 5FC 9 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 5FC 9 B 5FC 9 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 10 B DG 10 1_555 C N3 5FC 3 C 5FC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 10 B DG 10 1_555 C O2 5FC 3 C 5FC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 10 B DG 10 1_555 C N4 5FC 3 C 5FC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 DT 11 B DT 11 1_555 C N1 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O4 DT 11 B DT 11 1_555 C N6 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R2D _atom_sites.fract_transf_matrix[1][1] 0.022754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 501 1 ZN ZN . E 4 ZN A 1 502 2 ZN ZN . F 4 ZN A 1 503 3 ZN ZN . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 2 HOH HOH . G 5 HOH A 3 603 3 HOH HOH . G 5 HOH A 4 604 4 HOH HOH . G 5 HOH A 5 605 6 HOH HOH . G 5 HOH A 6 606 10 HOH HOH . G 5 HOH A 7 607 11 HOH HOH . G 5 HOH A 8 608 12 HOH HOH . G 5 HOH A 9 609 13 HOH HOH . G 5 HOH A 10 610 15 HOH HOH . G 5 HOH A 11 611 16 HOH HOH . G 5 HOH A 12 612 18 HOH HOH . G 5 HOH A 13 613 19 HOH HOH . G 5 HOH A 14 614 20 HOH HOH . G 5 HOH A 15 615 23 HOH HOH . G 5 HOH A 16 616 24 HOH HOH . G 5 HOH A 17 617 26 HOH HOH . G 5 HOH A 18 618 28 HOH HOH . G 5 HOH A 19 619 31 HOH HOH . G 5 HOH A 20 620 32 HOH HOH . G 5 HOH A 21 621 33 HOH HOH . G 5 HOH A 22 622 37 HOH HOH . G 5 HOH A 23 623 38 HOH HOH . G 5 HOH A 24 624 39 HOH HOH . G 5 HOH A 25 625 41 HOH HOH . G 5 HOH A 26 626 42 HOH HOH . G 5 HOH A 27 627 45 HOH HOH . G 5 HOH A 28 628 46 HOH HOH . G 5 HOH A 29 629 47 HOH HOH . G 5 HOH A 30 630 53 HOH HOH . G 5 HOH A 31 631 55 HOH HOH . G 5 HOH A 32 632 60 HOH HOH . G 5 HOH A 33 633 61 HOH HOH . G 5 HOH A 34 634 62 HOH HOH . G 5 HOH A 35 635 67 HOH HOH . G 5 HOH A 36 636 68 HOH HOH . G 5 HOH A 37 637 69 HOH HOH . G 5 HOH A 38 638 71 HOH HOH . G 5 HOH A 39 639 74 HOH HOH . G 5 HOH A 40 640 75 HOH HOH . G 5 HOH A 41 641 76 HOH HOH . G 5 HOH A 42 642 78 HOH HOH . G 5 HOH A 43 643 80 HOH HOH . G 5 HOH A 44 644 82 HOH HOH . G 5 HOH A 45 645 83 HOH HOH . G 5 HOH A 46 646 84 HOH HOH . G 5 HOH A 47 647 85 HOH HOH . G 5 HOH A 48 648 14 HOH HOH . G 5 HOH A 49 649 17 HOH HOH . H 5 HOH B 1 101 5 HOH HOH . H 5 HOH B 2 102 8 HOH HOH . H 5 HOH B 3 103 9 HOH HOH . H 5 HOH B 4 104 21 HOH HOH . H 5 HOH B 5 105 25 HOH HOH . H 5 HOH B 6 106 27 HOH HOH . H 5 HOH B 7 107 29 HOH HOH . H 5 HOH B 8 108 34 HOH HOH . H 5 HOH B 9 109 36 HOH HOH . H 5 HOH B 10 110 40 HOH HOH . H 5 HOH B 11 111 43 HOH HOH . H 5 HOH B 12 112 44 HOH HOH . H 5 HOH B 13 113 48 HOH HOH . H 5 HOH B 14 114 49 HOH HOH . H 5 HOH B 15 115 51 HOH HOH . H 5 HOH B 16 116 52 HOH HOH . H 5 HOH B 17 117 54 HOH HOH . H 5 HOH B 18 118 57 HOH HOH . H 5 HOH B 19 119 59 HOH HOH . H 5 HOH B 20 120 64 HOH HOH . H 5 HOH B 21 121 66 HOH HOH . H 5 HOH B 22 122 72 HOH HOH . H 5 HOH B 23 123 77 HOH HOH . I 5 HOH C 1 101 7 HOH HOH . I 5 HOH C 2 102 22 HOH HOH . I 5 HOH C 3 103 30 HOH HOH . I 5 HOH C 4 104 35 HOH HOH . I 5 HOH C 5 105 50 HOH HOH . I 5 HOH C 6 106 56 HOH HOH . I 5 HOH C 7 107 58 HOH HOH . I 5 HOH C 8 108 63 HOH HOH . I 5 HOH C 9 109 65 HOH HOH . I 5 HOH C 10 110 70 HOH HOH . I 5 HOH C 11 111 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 0.865 _atom_site.Cartn_y -7.142 _atom_site.Cartn_z -0.191 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #