data_4R2I # _model_server_result.job_id OPGzh_vH5mIxBHprjmyoWw _model_server_result.datetime_utc '2024-10-20 08:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4R2I # _exptl.entry_id 4R2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R2I _cell.length_a 52.36 _cell.length_b 58.32 _cell.length_c 67.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 39 A ASP 39 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A OD1 ASP 39 A ASP 39 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A NE2 HIS 41 A HIS 41 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 A OD2 ASP 73 A ASP 73 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 A NE2 HIS 108 A HIS 108 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4R2I _atom_sites.fract_transf_matrix[1][1] 0.019099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 300 300 ZN ZN . C 3 ANP A 1 301 301 ANP ANP . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 18 HOH HOH . D 4 HOH A 15 415 19 HOH HOH . D 4 HOH A 16 416 22 HOH HOH . D 4 HOH A 17 417 24 HOH HOH . D 4 HOH A 18 418 25 HOH HOH . D 4 HOH A 19 419 28 HOH HOH . D 4 HOH A 20 420 29 HOH HOH . D 4 HOH A 21 421 31 HOH HOH . D 4 HOH A 22 422 32 HOH HOH . D 4 HOH A 23 423 34 HOH HOH . D 4 HOH A 24 424 35 HOH HOH . D 4 HOH A 25 425 36 HOH HOH . D 4 HOH A 26 426 37 HOH HOH . D 4 HOH A 27 427 38 HOH HOH . D 4 HOH A 28 428 41 HOH HOH . D 4 HOH A 29 429 44 HOH HOH . D 4 HOH A 30 430 45 HOH HOH . D 4 HOH A 31 431 47 HOH HOH . D 4 HOH A 32 432 49 HOH HOH . D 4 HOH A 33 433 57 HOH HOH . D 4 HOH A 34 434 60 HOH HOH . D 4 HOH A 35 435 62 HOH HOH . D 4 HOH A 36 436 63 HOH HOH . D 4 HOH A 37 437 64 HOH HOH . D 4 HOH A 38 438 67 HOH HOH . D 4 HOH A 39 439 69 HOH HOH . D 4 HOH A 40 440 71 HOH HOH . D 4 HOH A 41 441 73 HOH HOH . D 4 HOH A 42 442 74 HOH HOH . D 4 HOH A 43 443 76 HOH HOH . D 4 HOH A 44 444 79 HOH HOH . D 4 HOH A 45 445 80 HOH HOH . D 4 HOH A 46 446 83 HOH HOH . D 4 HOH A 47 447 85 HOH HOH . D 4 HOH A 48 448 90 HOH HOH . D 4 HOH A 49 449 94 HOH HOH . D 4 HOH A 50 450 95 HOH HOH . D 4 HOH A 51 451 103 HOH HOH . D 4 HOH A 52 452 106 HOH HOH . D 4 HOH A 53 453 107 HOH HOH . D 4 HOH A 54 454 108 HOH HOH . D 4 HOH A 55 455 109 HOH HOH . D 4 HOH A 56 456 110 HOH HOH . D 4 HOH A 57 457 111 HOH HOH . D 4 HOH A 58 458 112 HOH HOH . D 4 HOH A 59 459 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 11.959 -7.664 -19.492 1 60.97 ? PG ANP 301 A 1 HETATM 2 O O1G ANP . . . C 3 10.641 -6.981 -19.19 1 53.11 -1 O1G ANP 301 A 1 HETATM 3 O O2G ANP . . . C 3 12.531 -8.234 -18.213 1 53.13 -1 O2G ANP 301 A 1 HETATM 4 O O3G ANP . . . C 3 11.87 -8.813 -20.476 1 54.35 ? O3G ANP 301 A 1 HETATM 5 P PB ANP . . . C 3 13.668 -5.358 -19.446 1 42.98 ? PB ANP 301 A 1 HETATM 6 O O1B ANP . . . C 3 12.713 -4.683 -18.515 1 51.23 -1 O1B ANP 301 A 1 HETATM 7 O O2B ANP . . . C 3 14.28 -4.364 -20.367 1 43.79 ? O2B ANP 301 A 1 HETATM 8 N N3B ANP . . . C 3 12.941 -6.573 -20.269 1 52.14 ? N3B ANP 301 A 1 HETATM 9 P PA ANP . . . C 3 16.208 -5.813 -18.19 1 35.05 ? PA ANP 301 A 1 HETATM 10 O O1A ANP . . . C 3 16.392 -6.492 -16.834 1 32.68 -1 O1A ANP 301 A 1 HETATM 11 O O2A ANP . . . C 3 16.275 -4.296 -18.105 1 32.99 ? O2A ANP 301 A 1 HETATM 12 O O3A ANP . . . C 3 14.724 -6.214 -18.604 1 37.53 ? O3A ANP 301 A 1 HETATM 13 O O5' ANP . . . C 3 17.271 -6.472 -19.126 1 39.65 ? O5' ANP 301 A 1 HETATM 14 C C5' ANP . . . C 3 17.441 -5.967 -20.421 1 39.99 ? C5' ANP 301 A 1 HETATM 15 C C4' ANP . . . C 3 18.403 -6.856 -21.116 1 37.27 ? C4' ANP 301 A 1 HETATM 16 O O4' ANP . . . C 3 19.608 -6.769 -20.642 1 38.12 ? O4' ANP 301 A 1 HETATM 17 C C3' ANP . . . C 3 17.917 -8.42 -20.961 1 42.54 ? C3' ANP 301 A 1 HETATM 18 O O3' ANP . . . C 3 18.091 -9.045 -22.281 1 44.07 ? O3' ANP 301 A 1 HETATM 19 C C2' ANP . . . C 3 18.655 -8.94 -20.1 1 42.15 ? C2' ANP 301 A 1 HETATM 20 O O2' ANP . . . C 3 18.792 -10.396 -20.438 1 41.66 ? O2' ANP 301 A 1 HETATM 21 C C1' ANP . . . C 3 20.046 -8.111 -20.112 1 35.23 ? C1' ANP 301 A 1 HETATM 22 N N9 ANP . . . C 3 20.59 -8.027 -18.892 1 32.02 ? N9 ANP 301 A 1 HETATM 23 C C8 ANP . . . C 3 19.984 -7.63 -17.746 1 30.75 ? C8 ANP 301 A 1 HETATM 24 N N7 ANP . . . C 3 20.811 -7.682 -16.706 1 27.86 ? N7 ANP 301 A 1 HETATM 25 C C5 ANP . . . C 3 22 -8.158 -17.132 1 31.42 ? C5 ANP 301 A 1 HETATM 26 C C6 ANP . . . C 3 23.259 -8.434 -16.486 1 29.71 ? C6 ANP 301 A 1 HETATM 27 N N6 ANP . . . C 3 23.415 -8.241 -15.09 1 29.14 ? N6 ANP 301 A 1 HETATM 28 N N1 ANP . . . C 3 24.278 -8.858 -17.243 1 32.19 ? N1 ANP 301 A 1 HETATM 29 C C2 ANP . . . C 3 24.153 -9.046 -18.574 1 33.23 ? C2 ANP 301 A 1 HETATM 30 N N3 ANP . . . C 3 22.97 -8.829 -19.204 1 31.89 ? N3 ANP 301 A 1 HETATM 31 C C4 ANP . . . C 3 21.878 -8.377 -18.533 1 31.13 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #