data_4R2U # _model_server_result.job_id 65yk-gCHtH_3tmQUKuLtOA _model_server_result.datetime_utc '2024-11-15 16:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4R2U # _exptl.entry_id 4R2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.43 _cell.angle_gamma 90 _cell.entry_id 4R2U _cell.length_a 89.63 _cell.length_b 63.67 _cell.length_c 118.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 44.815 31.835 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C33 H29 N3 O5' _chem_comp.formula_weight 547.6 _chem_comp.id 3JX _chem_comp.mon_nstd_flag . _chem_comp.name "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 3JX doub 1 n y C32 C33 3JX sing 2 n y C31 C18 3JX sing 3 n y C19 C17 3JX sing 4 n n O37 N36 3JX doub 5 n n N36 C33 3JX sing 6 n n N36 O38 3JX sing 7 n n C33 C34 3JX doub 8 n y C18 C17 3JX sing 9 n n C18 C35 3JX doub 10 n y C17 N16 3JX sing 11 n n N16 C14 3JX sing 12 n n C34 C35 3JX sing 13 n y C14 O15 3JX doub 14 n n C14 C01 3JX sing 15 n n C06 C01 3JX doub 16 n y C06 C05 3JX sing 17 n y C01 C02 3JX sing 18 n y C10 C09 3JX sing 19 n n C05 C09 3JX sing 20 n y C05 C04 3JX doub 21 n y C02 C03 3JX doub 22 n y C09 C08 3JX doub 23 n y C04 C03 3JX sing 24 n y C04 N07 3JX sing 25 n y C08 N07 3JX sing 26 n y C08 C11 3JX sing 27 n n N07 C12 3JX sing 28 n n C20 C21 3JX doub 29 n y C20 C13 3JX sing 30 n y C12 C13 3JX sing 31 n n C21 C22 3JX sing 32 n y C13 C24 3JX doub 33 n y O40 C39 3JX doub 34 n n C22 C25 3JX sing 35 n n C22 C23 3JX doub 36 n y C24 C23 3JX sing 37 n y C25 C26 3JX doub 38 n y C25 C30 3JX sing 39 n y C39 C30 3JX sing 40 n n C39 O41 3JX sing 41 n n C26 C27 3JX sing 42 n y C30 C29 3JX doub 43 n y C27 C28 3JX doub 44 n y C29 C28 3JX sing 45 n y C02 H1 3JX sing 46 n n C03 H2 3JX sing 47 n n C06 H3 3JX sing 48 n n C10 H4 3JX sing 49 n n C10 H5 3JX sing 50 n n C10 H6 3JX sing 51 n n C11 H7 3JX sing 52 n n C11 H8 3JX sing 53 n n C11 H9 3JX sing 54 n n C12 H10 3JX sing 55 n n C12 H11 3JX sing 56 n n N16 H12 3JX sing 57 n n C17 H13 3JX sing 58 n n C19 H14 3JX sing 59 n n C19 H15 3JX sing 60 n n C19 H16 3JX sing 61 n n C20 H17 3JX sing 62 n n C21 H18 3JX sing 63 n n C23 H19 3JX sing 64 n n C24 H20 3JX sing 65 n n C26 H21 3JX sing 66 n n C27 H22 3JX sing 67 n n C28 H23 3JX sing 68 n n C29 H24 3JX sing 69 n n C31 H25 3JX sing 70 n n C32 H26 3JX sing 71 n n C34 H27 3JX sing 72 n n C35 H28 3JX sing 73 n n O41 H29 3JX sing 74 n n # _atom_sites.entry_id 4R2U _atom_sites.fract_transf_matrix[1][1] 0.011157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002664 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3JX A 1 501 1 3JX LIG . D 2 3JX D 1 501 1 3JX LIG . E 3 HOH A 1 601 1 HOH HOH . E 3 HOH A 2 602 2 HOH HOH . E 3 HOH A 3 603 3 HOH HOH . E 3 HOH A 4 604 4 HOH HOH . E 3 HOH A 5 605 5 HOH HOH . E 3 HOH A 6 606 6 HOH HOH . E 3 HOH A 7 607 7 HOH HOH . E 3 HOH A 8 608 8 HOH HOH . E 3 HOH A 9 609 9 HOH HOH . E 3 HOH A 10 610 10 HOH HOH . E 3 HOH A 11 611 11 HOH HOH . E 3 HOH A 12 612 12 HOH HOH . E 3 HOH A 13 613 13 HOH HOH . E 3 HOH A 14 614 14 HOH HOH . E 3 HOH A 15 615 15 HOH HOH . E 3 HOH A 16 616 23 HOH HOH . E 3 HOH A 17 617 25 HOH HOH . E 3 HOH A 18 618 26 HOH HOH . E 3 HOH A 19 619 27 HOH HOH . E 3 HOH A 20 620 28 HOH HOH . E 3 HOH A 21 621 29 HOH HOH . E 3 HOH A 22 622 30 HOH HOH . E 3 HOH A 23 623 32 HOH HOH . E 3 HOH A 24 624 34 HOH HOH . E 3 HOH A 25 625 35 HOH HOH . E 3 HOH A 26 626 37 HOH HOH . E 3 HOH A 27 627 38 HOH HOH . E 3 HOH A 28 628 39 HOH HOH . E 3 HOH A 29 629 40 HOH HOH . E 3 HOH A 30 630 42 HOH HOH . E 3 HOH A 31 631 43 HOH HOH . E 3 HOH A 32 632 44 HOH HOH . E 3 HOH A 33 633 45 HOH HOH . E 3 HOH A 34 634 48 HOH HOH . E 3 HOH A 35 635 49 HOH HOH . E 3 HOH A 36 636 50 HOH HOH . E 3 HOH A 37 637 51 HOH HOH . E 3 HOH A 38 638 52 HOH HOH . E 3 HOH A 39 639 53 HOH HOH . E 3 HOH A 40 640 54 HOH HOH . E 3 HOH A 41 641 55 HOH HOH . E 3 HOH A 42 642 56 HOH HOH . E 3 HOH A 43 643 57 HOH HOH . E 3 HOH A 44 644 58 HOH HOH . E 3 HOH A 45 645 59 HOH HOH . E 3 HOH A 46 646 60 HOH HOH . E 3 HOH A 47 647 61 HOH HOH . E 3 HOH A 48 648 64 HOH HOH . E 3 HOH A 49 649 65 HOH HOH . E 3 HOH A 50 650 66 HOH HOH . E 3 HOH A 51 651 69 HOH HOH . E 3 HOH A 52 652 70 HOH HOH . E 3 HOH A 53 653 72 HOH HOH . E 3 HOH A 54 654 74 HOH HOH . E 3 HOH A 55 655 75 HOH HOH . E 3 HOH A 56 656 76 HOH HOH . E 3 HOH A 57 657 77 HOH HOH . E 3 HOH A 58 658 79 HOH HOH . E 3 HOH A 59 659 82 HOH HOH . E 3 HOH A 60 660 83 HOH HOH . E 3 HOH A 61 661 84 HOH HOH . E 3 HOH A 62 662 85 HOH HOH . E 3 HOH A 63 663 86 HOH HOH . E 3 HOH A 64 664 88 HOH HOH . E 3 HOH A 65 665 92 HOH HOH . E 3 HOH A 66 666 93 HOH HOH . E 3 HOH A 67 667 96 HOH HOH . E 3 HOH A 68 668 97 HOH HOH . E 3 HOH A 69 669 99 HOH HOH . E 3 HOH A 70 670 102 HOH HOH . E 3 HOH A 71 671 105 HOH HOH . E 3 HOH A 72 672 106 HOH HOH . E 3 HOH A 73 673 107 HOH HOH . E 3 HOH A 74 674 108 HOH HOH . E 3 HOH A 75 675 109 HOH HOH . E 3 HOH A 76 676 110 HOH HOH . E 3 HOH A 77 677 111 HOH HOH . E 3 HOH A 78 678 112 HOH HOH . E 3 HOH A 79 679 113 HOH HOH . E 3 HOH A 80 680 114 HOH HOH . E 3 HOH A 81 681 115 HOH HOH . E 3 HOH A 82 682 116 HOH HOH . E 3 HOH A 83 683 117 HOH HOH . E 3 HOH A 84 684 118 HOH HOH . E 3 HOH A 85 685 119 HOH HOH . E 3 HOH A 86 686 120 HOH HOH . E 3 HOH A 87 687 121 HOH HOH . E 3 HOH A 88 688 122 HOH HOH . E 3 HOH A 89 689 123 HOH HOH . E 3 HOH A 90 690 124 HOH HOH . E 3 HOH A 91 691 126 HOH HOH . E 3 HOH A 92 692 127 HOH HOH . E 3 HOH A 93 693 128 HOH HOH . E 3 HOH A 94 694 129 HOH HOH . E 3 HOH A 95 695 130 HOH HOH . E 3 HOH A 96 696 131 HOH HOH . E 3 HOH A 97 697 132 HOH HOH . E 3 HOH A 98 698 133 HOH HOH . E 3 HOH A 99 699 134 HOH HOH . E 3 HOH A 100 700 135 HOH HOH . E 3 HOH A 101 701 136 HOH HOH . E 3 HOH A 102 702 137 HOH HOH . E 3 HOH A 103 703 138 HOH HOH . E 3 HOH A 104 704 139 HOH HOH . E 3 HOH A 105 705 144 HOH HOH . E 3 HOH A 106 706 145 HOH HOH . E 3 HOH A 107 707 146 HOH HOH . E 3 HOH A 108 708 147 HOH HOH . E 3 HOH A 109 709 148 HOH HOH . E 3 HOH A 110 710 149 HOH HOH . E 3 HOH A 111 711 150 HOH HOH . E 3 HOH A 112 712 151 HOH HOH . E 3 HOH A 113 713 152 HOH HOH . F 3 HOH D 1 601 125 HOH HOH . F 3 HOH D 2 602 16 HOH HOH . F 3 HOH D 3 603 17 HOH HOH . F 3 HOH D 4 604 18 HOH HOH . F 3 HOH D 5 605 19 HOH HOH . F 3 HOH D 6 606 20 HOH HOH . F 3 HOH D 7 607 21 HOH HOH . F 3 HOH D 8 608 22 HOH HOH . F 3 HOH D 9 609 24 HOH HOH . F 3 HOH D 10 610 31 HOH HOH . F 3 HOH D 11 611 33 HOH HOH . F 3 HOH D 12 612 36 HOH HOH . F 3 HOH D 13 613 41 HOH HOH . F 3 HOH D 14 614 46 HOH HOH . F 3 HOH D 15 615 47 HOH HOH . F 3 HOH D 16 616 62 HOH HOH . F 3 HOH D 17 617 63 HOH HOH . F 3 HOH D 18 618 67 HOH HOH . F 3 HOH D 19 619 68 HOH HOH . F 3 HOH D 20 620 71 HOH HOH . F 3 HOH D 21 621 73 HOH HOH . F 3 HOH D 22 622 78 HOH HOH . F 3 HOH D 23 623 80 HOH HOH . F 3 HOH D 24 624 81 HOH HOH . F 3 HOH D 25 625 87 HOH HOH . F 3 HOH D 26 626 89 HOH HOH . F 3 HOH D 27 627 90 HOH HOH . F 3 HOH D 28 628 91 HOH HOH . F 3 HOH D 29 629 94 HOH HOH . F 3 HOH D 30 630 95 HOH HOH . F 3 HOH D 31 631 98 HOH HOH . F 3 HOH D 32 632 100 HOH HOH . F 3 HOH D 33 633 101 HOH HOH . F 3 HOH D 34 634 103 HOH HOH . F 3 HOH D 35 635 104 HOH HOH . F 3 HOH D 36 636 140 HOH HOH . F 3 HOH D 37 637 141 HOH HOH . F 3 HOH D 38 638 142 HOH HOH . F 3 HOH D 39 639 143 HOH HOH . F 3 HOH D 40 640 153 HOH HOH . F 3 HOH D 41 641 154 HOH HOH . F 3 HOH D 42 642 155 HOH HOH . F 3 HOH D 43 643 156 HOH HOH . F 3 HOH D 44 644 157 HOH HOH . F 3 HOH D 45 645 158 HOH HOH . F 3 HOH D 46 646 159 HOH HOH . F 3 HOH D 47 647 160 HOH HOH . F 3 HOH D 48 648 161 HOH HOH . F 3 HOH D 49 649 162 HOH HOH . F 3 HOH D 50 650 163 HOH HOH . F 3 HOH D 51 651 164 HOH HOH . F 3 HOH D 52 652 165 HOH HOH . F 3 HOH D 53 653 166 HOH HOH . F 3 HOH D 54 654 167 HOH HOH . F 3 HOH D 55 655 168 HOH HOH . F 3 HOH D 56 656 169 HOH HOH . F 3 HOH D 57 657 170 HOH HOH . F 3 HOH D 58 658 171 HOH HOH . F 3 HOH D 59 659 172 HOH HOH . F 3 HOH D 60 660 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3JX . . . C 2 13.245 11.66 42.139 1 53.93 ? C01 3JX 501 A 1 HETATM 2 C C02 3JX . . . C 2 12.646 11.647 43.395 1 52.95 ? C02 3JX 501 A 1 HETATM 3 C C03 3JX . . . C 2 13.403 11.769 44.547 1 52.54 ? C03 3JX 501 A 1 HETATM 4 C C04 3JX . . . C 2 14.788 11.886 44.448 1 51.23 ? C04 3JX 501 A 1 HETATM 5 C C05 3JX . . . C 2 15.409 11.884 43.21 1 46.11 ? C05 3JX 501 A 1 HETATM 6 C C06 3JX . . . C 2 14.632 11.76 42.04 1 48.87 ? C06 3JX 501 A 1 HETATM 7 N N07 3JX . . . C 2 15.709 12.014 45.41 1 46.96 ? N07 3JX 501 A 1 HETATM 8 C C08 3JX . . . C 2 16.931 12.092 44.852 1 46.14 ? C08 3JX 501 A 1 HETATM 9 C C09 3JX . . . C 2 16.788 12.017 43.473 1 44.5 ? C09 3JX 501 A 1 HETATM 10 C C10 3JX . . . C 2 17.886 12.067 42.47 1 42.78 ? C10 3JX 501 A 1 HETATM 11 C C11 3JX . . . C 2 18.275 12.249 45.623 1 47.04 ? C11 3JX 501 A 1 HETATM 12 C C12 3JX . . . C 2 15.386 12.051 46.838 1 45.29 ? C12 3JX 501 A 1 HETATM 13 C C13 3JX . . . C 2 15.291 13.479 47.37 1 47.36 ? C13 3JX 501 A 1 HETATM 14 C C14 3JX . . . C 2 12.289 11.477 40.963 1 61.19 ? C14 3JX 501 A 1 HETATM 15 O O15 3JX . . . C 2 11.27 10.918 41.222 1 69.97 ? O15 3JX 501 A 1 HETATM 16 N N16 3JX . . . C 2 12.488 11.811 39.56 1 66.26 ? N16 3JX 501 A 1 HETATM 17 C C17 3JX . . . C 2 13.577 12.525 38.921 1 68.37 ? C17 3JX 501 A 1 HETATM 18 C C18 3JX . . . C 2 12.909 13.832 38.794 1 68.38 ? C18 3JX 501 A 1 HETATM 19 C C19 3JX . . . C 2 14.124 11.937 37.58 1 48.92 ? C19 3JX 501 A 1 HETATM 20 C C20 3JX . . . C 2 15.86 14.547 46.673 1 45.51 ? C20 3JX 501 A 1 HETATM 21 C C21 3JX . . . C 2 15.77 15.84 47.174 1 43.27 ? C21 3JX 501 A 1 HETATM 22 C C22 3JX . . . C 2 15.123 16.075 48.375 1 43.64 ? C22 3JX 501 A 1 HETATM 23 C C23 3JX . . . C 2 14.553 15.01 49.07 1 47.32 ? C23 3JX 501 A 1 HETATM 24 C C24 3JX . . . C 2 14.639 13.713 48.568 1 42.96 ? C24 3JX 501 A 1 HETATM 25 C C25 3JX . . . C 2 15.01 17.514 48.968 1 53.46 ? C25 3JX 501 A 1 HETATM 26 C C26 3JX . . . C 2 13.754 18.039 49.235 1 57.05 ? C26 3JX 501 A 1 HETATM 27 C C27 3JX . . . C 2 13.628 19.315 49.768 1 56.79 ? C27 3JX 501 A 1 HETATM 28 C C28 3JX . . . C 2 14.762 20.064 50.042 1 56.23 ? C28 3JX 501 A 1 HETATM 29 C C29 3JX . . . C 2 16.02 19.54 49.783 1 49.78 ? C29 3JX 501 A 1 HETATM 30 C C30 3JX . . . C 2 16.152 18.267 49.251 1 48.82 ? C30 3JX 501 A 1 HETATM 31 C C31 3JX . . . C 2 12.445 14.275 37.56 1 71.14 ? C31 3JX 501 A 1 HETATM 32 C C32 3JX . . . C 2 11.78 15.491 37.493 1 71.12 ? C32 3JX 501 A 1 HETATM 33 C C33 3JX . . . C 2 11.575 16.225 38.653 1 67.18 ? C33 3JX 501 A 1 HETATM 34 C C34 3JX . . . C 2 12.015 15.768 39.884 1 63.54 ? C34 3JX 501 A 1 HETATM 35 C C35 3JX . . . C 2 12.675 14.554 39.951 1 68.35 ? C35 3JX 501 A 1 HETATM 36 N N36 3JX . . . C 2 10.893 17.474 38.586 0.8 72.22 ? N36 3JX 501 A 1 HETATM 37 O O37 3JX . . . C 2 10.062 17.652 37.686 0.5 75.06 ? O37 3JX 501 A 1 HETATM 38 O O38 3JX . . . C 2 11.135 18.388 39.456 0.5 74.73 ? O38 3JX 501 A 1 HETATM 39 C C39 3JX . . . C 2 17.511 17.738 48.984 1 49.49 ? C39 3JX 501 A 1 HETATM 40 O O40 3JX . . . C 2 18.262 18.328 48.168 1 54.58 ? O40 3JX 501 A 1 HETATM 41 O O41 3JX . . . C 2 17.922 16.693 49.562 1 45.27 ? O41 3JX 501 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #