data_4R3A # _model_server_result.job_id YN0fh6lzX-ejyoED_gVCWg _model_server_result.datetime_utc '2024-11-17 16:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4R3A # _exptl.entry_id 4R3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R3A _cell.length_a 98.882 _cell.length_b 98.882 _cell.length_c 422.255 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 78 1_555 A SG CYS 117 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 84 B CYS 78 1_555 B SG CYS 117 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD1 ASN 256 A ASN 250 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc2 C MG MG . A MG 400 1_555 D O2G ANP . A ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc3 C MG MG . A MG 400 1_555 D O1A ANP . A ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 C MG MG . A MG 400 1_555 D O2B ANP . A ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 B OD1 ASN 256 B ASN 250 1_555 F MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 F MG MG . B MG 400 1_555 G O2G ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc7 F MG MG . B MG 400 1_555 G O1A ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc8 F MG MG . B MG 400 1_555 G O2B ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4R3A _atom_sites.fract_transf_matrix[1][1] 0.010113 _atom_sites.fract_transf_matrix[1][2] 0.005839 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 400 400 MG MG . D 3 ANP A 1 401 401 ANP ANP . E 4 RBF A 1 402 402 RBF RBF . F 2 MG B 1 400 400 MG MG . G 3 ANP B 1 401 401 ANP ANP . H 4 RBF B 1 402 402 RBF RBF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 3 -20.339 36.009 14.398 1 141.9 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . G 3 -19.222 35.227 13.78 1 133.48 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . G 3 -21.205 35.036 15.289 1 42.4 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . G 3 -19.745 37.153 15.321 1 45.81 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . G 3 -22.897 36.77 13.617 1 82.2 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . G 3 -23.541 37.97 12.997 1 82.44 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . G 3 -22.985 36.896 15.167 1 96.47 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . G 3 -21.284 36.683 13.159 1 77.01 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . G 3 -24.471 34.606 14.173 1 159.54 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . G 3 -23.775 34.478 15.472 1 139.78 ? O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . G 3 -24.718 33.257 13.498 1 138.47 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . G 3 -23.632 35.478 13.144 1 91.41 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . G 3 -25.819 35.4 14.402 1 102.92 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . G 3 -26.692 35.738 13.308 1 100.05 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . G 3 -27.578 36.886 13.725 1 102.83 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . G 3 -28.531 36.433 14.705 1 96.74 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . G 3 -26.874 38.063 14.388 1 104.93 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . G 3 -26.335 38.949 13.413 1 106.38 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . G 3 -28.001 38.704 15.204 1 99.03 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . G 3 -28.729 39.66 14.444 1 106.07 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . G 3 -28.889 37.502 15.562 1 133.97 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . G 3 -28.751 37.044 16.947 1 108.6 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . G 3 -27.979 36.01 17.392 1 98.88 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . G 3 -28.043 35.811 18.694 1 97.87 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . G 3 -28.931 36.804 19.119 1 100.61 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . G 3 -29.42 37.128 20.4 1 111.28 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . G 3 -29.088 36.488 21.517 1 106.9 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . G 3 -30.288 38.168 20.48 1 105.61 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . G 3 -30.626 38.816 19.363 1 105.57 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . G 3 -30.224 38.591 18.11 1 102.26 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . G 3 -29.365 37.561 18.051 1 99.16 ? C4 ANP 401 B 1 HETATM 32 H HNB1 ANP . . . G 3 -21.209 36.176 12.41 1 92.41 ? HNB1 ANP 401 B 1 HETATM 33 H "H5'1" ANP . . . G 3 -27.239 34.967 13.078 1 120.06 ? "H5'1" ANP 401 B 1 HETATM 34 H "H5'2" ANP . . . G 3 -26.156 36.002 12.531 1 120.06 ? "H5'2" ANP 401 B 1 HETATM 35 H H4' ANP . . . G 3 -28.09 37.219 12.96 1 123.39 ? H4' ANP 401 B 1 HETATM 36 H H3' ANP . . . G 3 -26.19 37.731 14.974 1 125.91 ? H3' ANP 401 B 1 HETATM 37 H HO3' ANP . . . G 3 -25.521 38.682 13.188 1 127.66 ? HO3' ANP 401 B 1 HETATM 38 H H2' ANP . . . G 3 -27.651 39.086 16.018 1 118.84 ? H2' ANP 401 B 1 HETATM 39 H HO2' ANP . . . G 3 -28.236 39.931 13.757 1 127.28 ? HO2' ANP 401 B 1 HETATM 40 H H1' ANP . . . G 3 -29.809 37.756 15.39 1 160.76 ? H1' ANP 401 B 1 HETATM 41 H H8 ANP . . . G 3 -27.44 35.476 16.81 1 118.66 ? H8 ANP 401 B 1 HETATM 42 H HN61 ANP . . . G 3 -28.484 35.79 21.488 1 128.28 ? HN61 ANP 401 B 1 HETATM 43 H HN62 ANP . . . G 3 -29.458 36.739 22.314 1 128.28 ? HN62 ANP 401 B 1 HETATM 44 H H2 ANP . . . G 3 -31.25 39.551 19.477 1 126.68 ? H2 ANP 401 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #