data_4R3D # _model_server_result.job_id -oRPOm63nB5kfDoYF61xxg _model_server_result.datetime_utc '2025-03-20 22:40:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4R3D # _exptl.entry_id 4R3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R3D _cell.length_a 136.624 _cell.length_b 136.624 _cell.length_c 239.518 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 197 B CYS 192 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 200 B CYS 195 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc3 A SG CYS 232 B CYS 227 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc4 A SG CYS 234 B CYS 229 1_555 C ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc5 B SG CYS 197 A CYS 192 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 B SG CYS 200 A CYS 195 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc7 B SG CYS 232 A CYS 227 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 B SG CYS 234 A CYS 229 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R3D _atom_sites.fract_transf_matrix[1][1] 0.007319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 401 401 ZN ZN . D 2 ZN A 1 401 401 ZN ZN . E 3 HOH B 1 501 2 HOH HOH . E 3 HOH B 2 502 3 HOH HOH . E 3 HOH B 3 503 5 HOH HOH . E 3 HOH B 4 504 7 HOH HOH . E 3 HOH B 5 505 13 HOH HOH . E 3 HOH B 6 506 15 HOH HOH . E 3 HOH B 7 507 16 HOH HOH . E 3 HOH B 8 508 17 HOH HOH . E 3 HOH B 9 509 19 HOH HOH . E 3 HOH B 10 510 20 HOH HOH . E 3 HOH B 11 511 22 HOH HOH . E 3 HOH B 12 512 23 HOH HOH . E 3 HOH B 13 513 24 HOH HOH . E 3 HOH B 14 514 25 HOH HOH . E 3 HOH B 15 515 26 HOH HOH . E 3 HOH B 16 516 27 HOH HOH . E 3 HOH B 17 517 28 HOH HOH . E 3 HOH B 18 518 30 HOH HOH . E 3 HOH B 19 519 31 HOH HOH . E 3 HOH B 20 520 32 HOH HOH . E 3 HOH B 21 521 36 HOH HOH . E 3 HOH B 22 522 37 HOH HOH . E 3 HOH B 23 523 38 HOH HOH . E 3 HOH B 24 524 39 HOH HOH . E 3 HOH B 25 525 40 HOH HOH . E 3 HOH B 26 526 44 HOH HOH . E 3 HOH B 27 527 45 HOH HOH . E 3 HOH B 28 528 46 HOH HOH . E 3 HOH B 29 529 47 HOH HOH . E 3 HOH B 30 530 48 HOH HOH . E 3 HOH B 31 531 49 HOH HOH . E 3 HOH B 32 532 50 HOH HOH . E 3 HOH B 33 533 51 HOH HOH . E 3 HOH B 34 534 55 HOH HOH . E 3 HOH B 35 535 57 HOH HOH . E 3 HOH B 36 536 58 HOH HOH . E 3 HOH B 37 537 59 HOH HOH . E 3 HOH B 38 538 60 HOH HOH . E 3 HOH B 39 539 61 HOH HOH . E 3 HOH B 40 540 62 HOH HOH . E 3 HOH B 41 541 65 HOH HOH . E 3 HOH B 42 542 66 HOH HOH . E 3 HOH B 43 543 67 HOH HOH . E 3 HOH B 44 544 68 HOH HOH . E 3 HOH B 45 545 69 HOH HOH . E 3 HOH B 46 546 70 HOH HOH . E 3 HOH B 47 547 71 HOH HOH . E 3 HOH B 48 548 73 HOH HOH . E 3 HOH B 49 549 74 HOH HOH . E 3 HOH B 50 550 78 HOH HOH . E 3 HOH B 51 551 82 HOH HOH . E 3 HOH B 52 552 83 HOH HOH . E 3 HOH B 53 553 86 HOH HOH . E 3 HOH B 54 554 87 HOH HOH . E 3 HOH B 55 555 88 HOH HOH . E 3 HOH B 56 556 90 HOH HOH . E 3 HOH B 57 557 91 HOH HOH . E 3 HOH B 58 558 94 HOH HOH . E 3 HOH B 59 559 95 HOH HOH . E 3 HOH B 60 560 96 HOH HOH . E 3 HOH B 61 561 99 HOH HOH . E 3 HOH B 62 562 102 HOH HOH . E 3 HOH B 63 563 104 HOH HOH . E 3 HOH B 64 564 105 HOH HOH . F 3 HOH A 1 501 1 HOH HOH . F 3 HOH A 2 502 4 HOH HOH . F 3 HOH A 3 503 6 HOH HOH . F 3 HOH A 4 504 8 HOH HOH . F 3 HOH A 5 505 9 HOH HOH . F 3 HOH A 6 506 10 HOH HOH . F 3 HOH A 7 507 11 HOH HOH . F 3 HOH A 8 508 12 HOH HOH . F 3 HOH A 9 509 14 HOH HOH . F 3 HOH A 10 510 18 HOH HOH . F 3 HOH A 11 511 21 HOH HOH . F 3 HOH A 12 512 29 HOH HOH . F 3 HOH A 13 513 33 HOH HOH . F 3 HOH A 14 514 34 HOH HOH . F 3 HOH A 15 515 35 HOH HOH . F 3 HOH A 16 516 41 HOH HOH . F 3 HOH A 17 517 42 HOH HOH . F 3 HOH A 18 518 43 HOH HOH . F 3 HOH A 19 519 52 HOH HOH . F 3 HOH A 20 520 53 HOH HOH . F 3 HOH A 21 521 54 HOH HOH . F 3 HOH A 22 522 56 HOH HOH . F 3 HOH A 23 523 63 HOH HOH . F 3 HOH A 24 524 64 HOH HOH . F 3 HOH A 25 525 72 HOH HOH . F 3 HOH A 26 526 75 HOH HOH . F 3 HOH A 27 527 76 HOH HOH . F 3 HOH A 28 528 77 HOH HOH . F 3 HOH A 29 529 79 HOH HOH . F 3 HOH A 30 530 80 HOH HOH . F 3 HOH A 31 531 81 HOH HOH . F 3 HOH A 32 532 84 HOH HOH . F 3 HOH A 33 533 85 HOH HOH . F 3 HOH A 34 534 89 HOH HOH . F 3 HOH A 35 535 92 HOH HOH . F 3 HOH A 36 536 93 HOH HOH . F 3 HOH A 37 537 97 HOH HOH . F 3 HOH A 38 538 98 HOH HOH . F 3 HOH A 39 539 100 HOH HOH . F 3 HOH A 40 540 101 HOH HOH . F 3 HOH A 41 541 103 HOH HOH . F 3 HOH A 42 542 106 HOH HOH . F 3 HOH A 43 543 107 HOH HOH . F 3 HOH A 44 544 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -59.873 _atom_site.Cartn_y -78.451 _atom_site.Cartn_z -21.905 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #