data_4R3M # _model_server_result.job_id V2I2hMdONvJsgFJ2UIONtQ _model_server_result.datetime_utc '2024-10-18 05:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4R3M # _exptl.entry_id 4R3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.304 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-benzyl-2-[(6-bromo-1,3-benzodioxol-5-yl)methyl]imidazo[1,2-a]pyrazine-3,8-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R3M _cell.length_a 66.578 _cell.length_b 90.926 _cell.length_c 98.894 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 Br N5 O2' _chem_comp.formula_weight 452.304 _chem_comp.id JR9 _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-benzyl-2-[(6-bromo-1,3-benzodioxol-5-yl)methyl]imidazo[1,2-a]pyrazine-3,8-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 JR9 doub 160 n y C17 C18 JR9 sing 161 n y C16 C15 JR9 sing 162 n y C18 C13 JR9 doub 163 n y C02 C03 JR9 doub 164 n y C02 N01 JR9 sing 165 n y C15 C14 JR9 doub 166 n y C03 N04 JR9 sing 167 n y C13 C14 JR9 sing 168 n y C13 C12 JR9 sing 169 n n N01 C06 JR9 doub 170 n y N11 C12 JR9 sing 171 n n N11 C07 JR9 sing 172 n n N04 C07 JR9 sing 173 n y N04 C05 JR9 sing 174 n y C07 C08 JR9 doub 175 n y C06 C05 JR9 sing 176 n y C06 N10 JR9 sing 177 n n C27 O28 JR9 sing 178 n n C27 O26 JR9 sing 179 n n O28 C24 JR9 sing 180 n n C05 N09 JR9 doub 181 n y O26 C23 JR9 sing 182 n n C24 C23 JR9 doub 183 n y C24 C25 JR9 sing 184 n y C23 C22 JR9 sing 185 n y C25 C20 JR9 doub 186 n y C08 N09 JR9 sing 187 n y C08 C19 JR9 sing 188 n n C22 C21 JR9 doub 189 n y C20 C21 JR9 sing 190 n y C20 C19 JR9 sing 191 n n C21 BR JR9 sing 192 n n C02 H1 JR9 sing 193 n n C03 H2 JR9 sing 194 n n N10 H3 JR9 sing 195 n n N10 H4 JR9 sing 196 n n C12 H5 JR9 sing 197 n n C14 H6 JR9 sing 198 n n C15 H7 JR9 sing 199 n n C16 H8 JR9 sing 200 n n C17 H9 JR9 sing 201 n n C18 H10 JR9 sing 202 n n C19 H11 JR9 sing 203 n n C19 H12 JR9 sing 204 n n C22 H13 JR9 sing 205 n n C25 H14 JR9 sing 206 n n C27 H15 JR9 sing 207 n n C27 H16 JR9 sing 208 n n N11 H17 JR9 sing 209 n n C12 H18 JR9 sing 210 n n # _atom_sites.entry_id 4R3M _atom_sites.fract_transf_matrix[1][1] 0.01502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JR9 A 1 301 301 JR9 JR9 . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 59 HOH HOH . C 3 HOH A 60 460 60 HOH HOH . C 3 HOH A 61 461 61 HOH HOH . C 3 HOH A 62 462 62 HOH HOH . C 3 HOH A 63 463 63 HOH HOH . C 3 HOH A 64 464 64 HOH HOH . C 3 HOH A 65 465 65 HOH HOH . C 3 HOH A 66 466 66 HOH HOH . C 3 HOH A 67 467 67 HOH HOH . C 3 HOH A 68 468 68 HOH HOH . C 3 HOH A 69 469 69 HOH HOH . C 3 HOH A 70 470 70 HOH HOH . C 3 HOH A 71 471 71 HOH HOH . C 3 HOH A 72 472 72 HOH HOH . C 3 HOH A 73 473 73 HOH HOH . C 3 HOH A 74 474 74 HOH HOH . C 3 HOH A 75 475 75 HOH HOH . C 3 HOH A 76 476 76 HOH HOH . C 3 HOH A 77 477 77 HOH HOH . C 3 HOH A 78 478 78 HOH HOH . C 3 HOH A 79 479 79 HOH HOH . C 3 HOH A 80 480 80 HOH HOH . C 3 HOH A 81 481 81 HOH HOH . C 3 HOH A 82 482 82 HOH HOH . C 3 HOH A 83 483 83 HOH HOH . C 3 HOH A 84 484 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 JR9 . . . B 2 -35.034 -10.494 -26.364 1 15.42 ? N01 JR9 301 A 1 HETATM 2 C C02 JR9 . . . B 2 -34.261 -9.846 -27.271 1 16.89 ? C02 JR9 301 A 1 HETATM 3 C C03 JR9 . . . B 2 -32.915 -9.608 -27.022 1 16.07 ? C03 JR9 301 A 1 HETATM 4 N N04 JR9 . . . B 2 -32.384 -10.054 -25.824 1 19.23 ? N04 JR9 301 A 1 HETATM 5 C C05 JR9 . . . B 2 -33.124 -10.691 -24.928 1 18.97 ? C05 JR9 301 A 1 HETATM 6 C C06 JR9 . . . B 2 -34.506 -10.916 -25.2 1 15.7 ? C06 JR9 301 A 1 HETATM 7 C C07 JR9 . . . B 2 -31.108 -9.931 -25.34 1 16.88 ? C07 JR9 301 A 1 HETATM 8 C C08 JR9 . . . B 2 -31.079 -10.564 -24.089 1 19.21 ? C08 JR9 301 A 1 HETATM 9 N N09 JR9 . . . B 2 -32.336 -11.031 -23.838 1 15.35 ? N09 JR9 301 A 1 HETATM 10 N N10 JR9 . . . B 2 -35.329 -11.58 -24.275 1 14.83 ? N10 JR9 301 A 1 HETATM 11 N N11 JR9 . . . B 2 -30.004 -9.316 -26.051 1 19.35 ? N11 JR9 301 A 1 HETATM 12 C C12 JR9 . . . B 2 -29.669 -7.914 -26.059 1 30.55 ? C12 JR9 301 A 1 HETATM 13 C C13 JR9 . . . B 2 -28.44 -7.63 -26.896 1 34.95 ? C13 JR9 301 A 1 HETATM 14 C C14 JR9 . . . B 2 -27.308 -7.004 -26.378 1 34.36 ? C14 JR9 301 A 1 HETATM 15 C C15 JR9 . . . B 2 -26.209 -6.79 -27.2 1 31.4 ? C15 JR9 301 A 1 HETATM 16 C C16 JR9 . . . B 2 -26.225 -7.206 -28.523 1 30.76 ? C16 JR9 301 A 1 HETATM 17 C C17 JR9 . . . B 2 -27.343 -7.846 -29.039 1 31.22 ? C17 JR9 301 A 1 HETATM 18 C C18 JR9 . . . B 2 -28.447 -8.056 -28.216 1 35.12 ? C18 JR9 301 A 1 HETATM 19 C C19 JR9 . . . B 2 -29.88 -10.672 -23.21 1 21.03 ? C19 JR9 301 A 1 HETATM 20 C C20 JR9 . . . B 2 -28.996 -11.834 -23.596 1 18.42 ? C20 JR9 301 A 1 HETATM 21 C C21 JR9 . . . B 2 -27.626 -11.801 -23.387 1 18.82 ? C21 JR9 301 A 1 HETATM 22 C C22 JR9 . . . B 2 -26.797 -12.858 -23.723 1 16.84 ? C22 JR9 301 A 1 HETATM 23 C C23 JR9 . . . B 2 -27.366 -14.032 -24.302 1 17.73 ? C23 JR9 301 A 1 HETATM 24 C C24 JR9 . . . B 2 -28.703 -14.078 -24.519 1 18.54 ? C24 JR9 301 A 1 HETATM 25 C C25 JR9 . . . B 2 -29.546 -12.972 -24.164 1 17.17 ? C25 JR9 301 A 1 HETATM 26 O O26 JR9 . . . B 2 -26.787 -15.224 -24.735 1 19.14 ? O26 JR9 301 A 1 HETATM 27 C C27 JR9 . . . B 2 -27.836 -16.052 -25.123 1 18.07 ? C27 JR9 301 A 1 HETATM 28 O O28 JR9 . . . B 2 -29.012 -15.308 -25.103 1 17.07 ? O28 JR9 301 A 1 HETATM 29 BR BR JR9 . . . B 2 -26.768 -10.267 -22.61 1 22.57 ? BR JR9 301 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #