data_4R3W # _model_server_result.job_id ICqAMl1xP-kgVAvDMdxDTA _model_server_result.datetime_utc '2024-11-24 23:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4R3W # _exptl.entry_id 4R3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.14 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzene-1,2,3-tricarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.43 _cell.angle_gamma 90 _cell.entry_id 4R3W _cell.length_a 59.964 _cell.length_b 98.444 _cell.length_c 64.263 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 274 A ALA 274 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A O PHE 276 A PHE 276 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc3 A O ALA 279 A ALA 279 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 B OD1 ASP 147 B ASP 147 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 B O ASP 147 B ASP 147 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc6 B O SER 236 B SER 236 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 B O ALA 274 B ALA 274 1_555 I NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc8 B O PHE 276 B PHE 276 1_555 I NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 B O ALA 279 B ALA 279 1_555 I NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 I NA NA . B NA 401 1_555 R O HOH . B HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 J NA NA . B NA 402 1_555 R O HOH . B HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C9 H6 O6' _chem_comp.formula_weight 210.14 _chem_comp.id 3GQ _chem_comp.mon_nstd_flag . _chem_comp.name 'benzene-1,2,3-tricarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAK 3GQ doub 1 n n CAK CAN 3GQ sing 2 n n CAK OAE 3GQ sing 3 n n CAI CAN 3GQ doub 4 n y CAI CAG 3GQ sing 5 n y CAN CAO 3GQ sing 6 n y CAG CAH 3GQ doub 7 n y OAF CAL 3GQ doub 8 n n CAO CAL 3GQ sing 9 n n CAO CAM 3GQ doub 10 n y CAH CAM 3GQ sing 11 n y CAL OAC 3GQ sing 12 n n CAM CAJ 3GQ sing 13 n n OAD CAJ 3GQ doub 14 n n CAJ OAA 3GQ sing 15 n n OAC H1 3GQ sing 16 n n OAA H2 3GQ sing 17 n n CAH H3 3GQ sing 18 n n CAG H4 3GQ sing 19 n n CAI H5 3GQ sing 20 n n OAE H6 3GQ sing 21 n n # _atom_sites.entry_id 4R3W _atom_sites.fract_transf_matrix[1][1] 0.016677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003676 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 3 3GQ A 1 402 1 3GQ 3GQ . E 4 EDO A 1 403 1 EDO EDO . F 4 EDO A 1 404 2 EDO EDO . G 5 ACT A 1 405 1 ACT ACT . H 6 A2P A 1 406 1 A2P A2P . I 2 NA B 1 401 2 NA NA . J 2 NA B 1 402 3 NA NA . K 4 EDO B 1 403 3 EDO EDO . L 4 EDO B 1 404 4 EDO EDO . M 4 EDO B 1 405 5 EDO EDO . N 4 EDO B 1 406 6 EDO EDO . O 4 EDO B 1 407 7 EDO EDO . P 6 A2P B 1 408 2 A2P A2P . Q 7 HOH A 1 501 1 HOH HOH . Q 7 HOH A 2 502 2 HOH HOH . Q 7 HOH A 3 503 3 HOH HOH . Q 7 HOH A 4 504 4 HOH HOH . Q 7 HOH A 5 505 5 HOH HOH . Q 7 HOH A 6 506 6 HOH HOH . Q 7 HOH A 7 507 7 HOH HOH . Q 7 HOH A 8 508 8 HOH HOH . Q 7 HOH A 9 509 9 HOH HOH . Q 7 HOH A 10 510 10 HOH HOH . Q 7 HOH A 11 511 11 HOH HOH . Q 7 HOH A 12 512 12 HOH HOH . Q 7 HOH A 13 513 13 HOH HOH . Q 7 HOH A 14 514 14 HOH HOH . Q 7 HOH A 15 515 16 HOH HOH . Q 7 HOH A 16 516 17 HOH HOH . Q 7 HOH A 17 517 18 HOH HOH . Q 7 HOH A 18 518 19 HOH HOH . Q 7 HOH A 19 519 20 HOH HOH . Q 7 HOH A 20 520 22 HOH HOH . Q 7 HOH A 21 521 23 HOH HOH . Q 7 HOH A 22 522 24 HOH HOH . Q 7 HOH A 23 523 25 HOH HOH . Q 7 HOH A 24 524 26 HOH HOH . Q 7 HOH A 25 525 27 HOH HOH . Q 7 HOH A 26 526 28 HOH HOH . Q 7 HOH A 27 527 29 HOH HOH . Q 7 HOH A 28 528 30 HOH HOH . Q 7 HOH A 29 529 31 HOH HOH . Q 7 HOH A 30 530 32 HOH HOH . Q 7 HOH A 31 531 33 HOH HOH . Q 7 HOH A 32 532 34 HOH HOH . Q 7 HOH A 33 533 35 HOH HOH . Q 7 HOH A 34 534 36 HOH HOH . Q 7 HOH A 35 535 37 HOH HOH . Q 7 HOH A 36 536 38 HOH HOH . Q 7 HOH A 37 537 39 HOH HOH . Q 7 HOH A 38 538 40 HOH HOH . Q 7 HOH A 39 539 41 HOH HOH . Q 7 HOH A 40 540 42 HOH HOH . Q 7 HOH A 41 541 43 HOH HOH . Q 7 HOH A 42 542 45 HOH HOH . Q 7 HOH A 43 543 46 HOH HOH . Q 7 HOH A 44 544 47 HOH HOH . Q 7 HOH A 45 545 48 HOH HOH . Q 7 HOH A 46 546 49 HOH HOH . Q 7 HOH A 47 547 50 HOH HOH . Q 7 HOH A 48 548 51 HOH HOH . Q 7 HOH A 49 549 52 HOH HOH . Q 7 HOH A 50 550 53 HOH HOH . Q 7 HOH A 51 551 54 HOH HOH . Q 7 HOH A 52 552 55 HOH HOH . Q 7 HOH A 53 553 56 HOH HOH . Q 7 HOH A 54 554 57 HOH HOH . Q 7 HOH A 55 555 58 HOH HOH . Q 7 HOH A 56 556 59 HOH HOH . Q 7 HOH A 57 557 60 HOH HOH . Q 7 HOH A 58 558 61 HOH HOH . Q 7 HOH A 59 559 62 HOH HOH . Q 7 HOH A 60 560 63 HOH HOH . Q 7 HOH A 61 561 64 HOH HOH . Q 7 HOH A 62 562 65 HOH HOH . Q 7 HOH A 63 563 66 HOH HOH . Q 7 HOH A 64 564 67 HOH HOH . Q 7 HOH A 65 565 68 HOH HOH . Q 7 HOH A 66 566 69 HOH HOH . Q 7 HOH A 67 567 70 HOH HOH . Q 7 HOH A 68 568 71 HOH HOH . Q 7 HOH A 69 569 72 HOH HOH . Q 7 HOH A 70 570 73 HOH HOH . Q 7 HOH A 71 571 74 HOH HOH . Q 7 HOH A 72 572 75 HOH HOH . Q 7 HOH A 73 573 76 HOH HOH . Q 7 HOH A 74 574 77 HOH HOH . Q 7 HOH A 75 575 78 HOH HOH . Q 7 HOH A 76 576 79 HOH HOH . Q 7 HOH A 77 577 80 HOH HOH . Q 7 HOH A 78 578 81 HOH HOH . Q 7 HOH A 79 579 82 HOH HOH . Q 7 HOH A 80 580 83 HOH HOH . Q 7 HOH A 81 581 84 HOH HOH . Q 7 HOH A 82 582 85 HOH HOH . Q 7 HOH A 83 583 86 HOH HOH . Q 7 HOH A 84 584 87 HOH HOH . Q 7 HOH A 85 585 88 HOH HOH . Q 7 HOH A 86 586 89 HOH HOH . Q 7 HOH A 87 587 90 HOH HOH . Q 7 HOH A 88 588 91 HOH HOH . Q 7 HOH A 89 589 92 HOH HOH . Q 7 HOH A 90 590 93 HOH HOH . Q 7 HOH A 91 591 94 HOH HOH . Q 7 HOH A 92 592 95 HOH HOH . Q 7 HOH A 93 593 96 HOH HOH . Q 7 HOH A 94 594 97 HOH HOH . Q 7 HOH A 95 595 98 HOH HOH . Q 7 HOH A 96 596 99 HOH HOH . Q 7 HOH A 97 597 100 HOH HOH . Q 7 HOH A 98 598 101 HOH HOH . Q 7 HOH A 99 599 116 HOH HOH . Q 7 HOH A 100 600 172 HOH HOH . Q 7 HOH A 101 601 173 HOH HOH . Q 7 HOH A 102 602 174 HOH HOH . Q 7 HOH A 103 603 175 HOH HOH . R 7 HOH B 1 501 15 HOH HOH . R 7 HOH B 2 502 21 HOH HOH . R 7 HOH B 3 503 44 HOH HOH . R 7 HOH B 4 504 102 HOH HOH . R 7 HOH B 5 505 103 HOH HOH . R 7 HOH B 6 506 104 HOH HOH . R 7 HOH B 7 507 105 HOH HOH . R 7 HOH B 8 508 106 HOH HOH . R 7 HOH B 9 509 107 HOH HOH . R 7 HOH B 10 510 108 HOH HOH . R 7 HOH B 11 511 109 HOH HOH . R 7 HOH B 12 512 110 HOH HOH . R 7 HOH B 13 513 111 HOH HOH . R 7 HOH B 14 514 112 HOH HOH . R 7 HOH B 15 515 113 HOH HOH . R 7 HOH B 16 516 114 HOH HOH . R 7 HOH B 17 517 115 HOH HOH . R 7 HOH B 18 518 117 HOH HOH . R 7 HOH B 19 519 118 HOH HOH . R 7 HOH B 20 520 119 HOH HOH . R 7 HOH B 21 521 120 HOH HOH . R 7 HOH B 22 522 121 HOH HOH . R 7 HOH B 23 523 122 HOH HOH . R 7 HOH B 24 524 123 HOH HOH . R 7 HOH B 25 525 124 HOH HOH . R 7 HOH B 26 526 125 HOH HOH . R 7 HOH B 27 527 126 HOH HOH . R 7 HOH B 28 528 127 HOH HOH . R 7 HOH B 29 529 128 HOH HOH . R 7 HOH B 30 530 129 HOH HOH . R 7 HOH B 31 531 130 HOH HOH . R 7 HOH B 32 532 131 HOH HOH . R 7 HOH B 33 533 132 HOH HOH . R 7 HOH B 34 534 133 HOH HOH . R 7 HOH B 35 535 134 HOH HOH . R 7 HOH B 36 536 135 HOH HOH . R 7 HOH B 37 537 136 HOH HOH . R 7 HOH B 38 538 137 HOH HOH . R 7 HOH B 39 539 138 HOH HOH . R 7 HOH B 40 540 139 HOH HOH . R 7 HOH B 41 541 140 HOH HOH . R 7 HOH B 42 542 141 HOH HOH . R 7 HOH B 43 543 142 HOH HOH . R 7 HOH B 44 544 143 HOH HOH . R 7 HOH B 45 545 144 HOH HOH . R 7 HOH B 46 546 145 HOH HOH . R 7 HOH B 47 547 146 HOH HOH . R 7 HOH B 48 548 147 HOH HOH . R 7 HOH B 49 549 148 HOH HOH . R 7 HOH B 50 550 149 HOH HOH . R 7 HOH B 51 551 150 HOH HOH . R 7 HOH B 52 552 151 HOH HOH . R 7 HOH B 53 553 152 HOH HOH . R 7 HOH B 54 554 153 HOH HOH . R 7 HOH B 55 555 154 HOH HOH . R 7 HOH B 56 556 155 HOH HOH . R 7 HOH B 57 557 156 HOH HOH . R 7 HOH B 58 558 157 HOH HOH . R 7 HOH B 59 559 158 HOH HOH . R 7 HOH B 60 560 159 HOH HOH . R 7 HOH B 61 561 160 HOH HOH . R 7 HOH B 62 562 161 HOH HOH . R 7 HOH B 63 563 162 HOH HOH . R 7 HOH B 64 564 163 HOH HOH . R 7 HOH B 65 565 164 HOH HOH . R 7 HOH B 66 566 165 HOH HOH . R 7 HOH B 67 567 166 HOH HOH . R 7 HOH B 68 568 167 HOH HOH . R 7 HOH B 69 569 168 HOH HOH . R 7 HOH B 70 570 169 HOH HOH . R 7 HOH B 71 571 170 HOH HOH . R 7 HOH B 72 572 171 HOH HOH . R 7 HOH B 73 573 176 HOH HOH . R 7 HOH B 74 574 177 HOH HOH . R 7 HOH B 75 575 178 HOH HOH . R 7 HOH B 76 576 179 HOH HOH . R 7 HOH B 77 577 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 3GQ . . . D 3 -4.187 4.773 4.546 1 42.09 ? OAC 3GQ 402 A 1 HETATM 2 C CAL 3GQ . . . D 3 -3.897 4.627 3.36 1 43.58 ? CAL 3GQ 402 A 1 HETATM 3 O OAF 3GQ . . . D 3 -3.857 5.631 2.613 1 42.16 ? OAF 3GQ 402 A 1 HETATM 4 C CAO 3GQ . . . D 3 -3.616 3.344 2.892 1 43.46 ? CAO 3GQ 402 A 1 HETATM 5 C CAM 3GQ . . . D 3 -2.359 2.776 3.161 1 44.97 ? CAM 3GQ 402 A 1 HETATM 6 C CAJ 3GQ . . . D 3 -1.339 3.455 3.872 1 45.64 ? CAJ 3GQ 402 A 1 HETATM 7 O OAD 3GQ . . . D 3 -1.078 4.66 3.655 1 42.46 ? OAD 3GQ 402 A 1 HETATM 8 O OAA 3GQ . . . D 3 -0.611 2.843 4.677 1 44.55 ? OAA 3GQ 402 A 1 HETATM 9 C CAH 3GQ . . . D 3 -2.086 1.487 2.685 1 46 ? CAH 3GQ 402 A 1 HETATM 10 C CAG 3GQ . . . D 3 -3.043 0.76 1.965 1 46.85 ? CAG 3GQ 402 A 1 HETATM 11 C CAI 3GQ . . . D 3 -4.289 1.32 1.708 1 46.82 ? CAI 3GQ 402 A 1 HETATM 12 C CAN 3GQ . . . D 3 -4.592 2.615 2.176 1 47.15 ? CAN 3GQ 402 A 1 HETATM 13 C CAK 3GQ . . . D 3 -5.866 3.124 1.866 1 47.11 ? CAK 3GQ 402 A 1 HETATM 14 O OAE 3GQ . . . D 3 -6.542 3.808 2.676 1 43.52 ? OAE 3GQ 402 A 1 HETATM 15 O OAB 3GQ . . . D 3 -6.35 2.869 0.74 1 54.09 ? OAB 3GQ 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #