data_4R40 # _model_server_result.job_id UY4QsB40ISTWszg7FJvX9A _model_server_result.datetime_utc '2024-11-05 00:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4R40 # _exptl.entry_id 4R40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.83 _cell.angle_gamma 90 _cell.entry_id 4R40 _cell.length_a 47.389 _cell.length_b 175.252 _cell.length_c 66.268 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,N,O 1 1 C,D,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 25 A TRP 44 1_555 A N MSE 26 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 26 A MSE 45 1_555 A N GLY 27 A GLY 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ARG 56 A ARG 75 1_555 A N MSE 57 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 57 A MSE 76 1_555 A N PRO 58 A PRO 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C LEU 183 A LEU 202 1_555 A N MSE 184 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 184 A MSE 203 1_555 A N SER 185 A SER 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C VAL 253 A VAL 272 1_555 A N MSE 254 A MSE 273 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C VAL 253 A VAL 272 1_555 A N MSE 254 A MSE 273 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 254 A MSE 273 1_555 A N ASP 255 A ASP 274 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C MSE 254 A MSE 273 1_555 A N ASP 255 A ASP 274 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C THR 368 A THR 387 1_555 A N MSE 369 A MSE 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 A C MSE 369 A MSE 388 1_555 A N VAL 370 A VAL 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 B C GLN 29 B GLN 56 1_555 B N MSE 30 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 30 B MSE 57 1_555 B N GLN 31 B GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C GLN 54 B GLN 81 1_555 B N MSE 55 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 55 B MSE 82 1_555 B N LEU 56 B LEU 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C LYS 98 B LYS 125 1_555 B N MSE 99 B MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 99 B MSE 126 1_555 B N TYR 100 B TYR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 C C TRP 25 C TRP 44 1_555 C N MSE 26 C MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 C C MSE 26 C MSE 45 1_555 C N GLY 27 C GLY 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 C C ARG 56 C ARG 75 1_555 C N MSE 57 C MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 C C MSE 57 C MSE 76 1_555 C N PRO 58 C PRO 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 C C LEU 183 C LEU 202 1_555 C N MSE 184 C MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 C C MSE 184 C MSE 203 1_555 C N SER 185 C SER 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale25 C C VAL 253 C VAL 272 1_555 C N MSE 254 C MSE 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 C C MSE 254 C MSE 273 1_555 C N ASP 255 C ASP 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale27 C C THR 368 C THR 387 1_555 C N MSE 369 C MSE 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 C C MSE 369 C MSE 388 1_555 C N VAL 370 C VAL 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 D C GLN 29 D GLN 56 1_555 D N MSE 30 D MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 D C MSE 30 D MSE 57 1_555 D N GLN 31 D GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 D C GLN 54 D GLN 81 1_555 D N MSE 55 D MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 D C MSE 55 D MSE 82 1_555 D N LEU 56 D LEU 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 D C LYS 98 D LYS 125 1_555 D N MSE 99 D MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale34 D C MSE 99 D MSE 126 1_555 D N TYR 100 D TYR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 120 n n C1 C2 GOL sing 121 n n C1 H11 GOL sing 122 n n C1 H12 GOL sing 123 n n O1 HO1 GOL sing 124 n n C2 O2 GOL sing 125 n n C2 C3 GOL sing 126 n n C2 H2 GOL sing 127 n n O2 HO2 GOL sing 128 n n C3 O3 GOL sing 129 n n C3 H31 GOL sing 130 n n C3 H32 GOL sing 131 n n O3 HO3 GOL sing 132 n n # _atom_sites.entry_id 4R40 _atom_sites.fract_transf_matrix[1][1] 0.021102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 501 450 SO4 SO4 . F 4 FMT A 1 502 451 FMT FMT . G 4 FMT B 1 201 180 FMT FMT . H 5 GOL B 1 202 181 GOL GOL . I 5 GOL B 1 203 182 GOL GOL . J 3 SO4 B 1 204 451 SO4 SO4 . K 5 GOL C 1 501 450 GOL GOL . L 3 SO4 C 1 502 453 SO4 SO4 . M 3 SO4 D 1 201 451 SO4 SO4 . N 6 HOH A 1 601 1 HOH HOH . N 6 HOH A 2 602 2 HOH HOH . N 6 HOH A 3 603 3 HOH HOH . N 6 HOH A 4 604 4 HOH HOH . N 6 HOH A 5 605 5 HOH HOH . N 6 HOH A 6 606 6 HOH HOH . N 6 HOH A 7 607 8 HOH HOH . N 6 HOH A 8 608 9 HOH HOH . N 6 HOH A 9 609 10 HOH HOH . N 6 HOH A 10 610 11 HOH HOH . N 6 HOH A 11 611 12 HOH HOH . N 6 HOH A 12 612 17 HOH HOH . N 6 HOH A 13 613 32 HOH HOH . N 6 HOH A 14 614 34 HOH HOH . O 6 HOH B 1 301 13 HOH HOH . O 6 HOH B 2 302 14 HOH HOH . O 6 HOH B 3 303 15 HOH HOH . O 6 HOH B 4 304 16 HOH HOH . O 6 HOH B 5 305 18 HOH HOH . O 6 HOH B 6 306 30 HOH HOH . O 6 HOH B 7 307 31 HOH HOH . P 6 HOH C 1 601 7 HOH HOH . P 6 HOH C 2 602 19 HOH HOH . P 6 HOH C 3 603 20 HOH HOH . P 6 HOH C 4 604 21 HOH HOH . P 6 HOH C 5 605 22 HOH HOH . P 6 HOH C 6 606 23 HOH HOH . P 6 HOH C 7 607 24 HOH HOH . P 6 HOH C 8 608 25 HOH HOH . P 6 HOH C 9 609 26 HOH HOH . P 6 HOH C 10 610 33 HOH HOH . P 6 HOH C 11 611 36 HOH HOH . P 6 HOH C 12 612 37 HOH HOH . Q 6 HOH D 1 301 27 HOH HOH . Q 6 HOH D 2 302 28 HOH HOH . Q 6 HOH D 3 303 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 17.409 76.177 36.254 1 46.83 ? C1 GOL 501 C 1 HETATM 2 O O1 GOL . . . K 5 16.636 76.881 37.2 1 51.66 ? O1 GOL 501 C 1 HETATM 3 C C2 GOL . . . K 5 17.38 74.69 36.586 1 50.99 ? C2 GOL 501 C 1 HETATM 4 O O2 GOL . . . K 5 16.297 74.422 37.449 1 44.4 ? O2 GOL 501 C 1 HETATM 5 C C3 GOL . . . K 5 17.213 73.885 35.304 1 46.33 ? C3 GOL 501 C 1 HETATM 6 O O3 GOL . . . K 5 15.996 74.237 34.687 1 48.99 ? O3 GOL 501 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #