data_4R4F # _model_server_result.job_id aVfpuatcm8FrXtM-S49u1w _model_server_result.datetime_utc '2024-10-17 19:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 4R4F # _exptl.entry_id 4R4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R,R)-2,3-BUTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R4F _cell.length_a 158.321 _cell.length_b 171.23 _cell.length_c 227.974 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 54 1_555 A SG CYS 55 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 100 A CYS 119 1_555 A SG CYS 113 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 126 A CYS 218 1_555 A SG CYS 155 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 136 A CYS 228 1_555 A SG CYS 147 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 204 A CYS 296 1_555 A SG CYS 223 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 270 A CYS 378 1_555 A SG CYS 329 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 277 A CYS 385 1_555 A SG CYS 302 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf9 B SG CYS 132 L CYS 134 1_555 B SG CYS 192 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 C SG CYS 21 H CYS 22 1_555 C SG CYS 94 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 C SG CYS 145 H CYS 140 1_555 C SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 D SG MPT 1 R MPT 1 1_555 D SG CYS 19 R CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf13 D SG CYS 6 R CYS 6 1_555 D SG CYS 24 R CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 D SG CYS 10 R CYS 10 1_555 D SG CYS 26 R CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 142 A ASN 234 1_555 G C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 170 A ASN 262 1_555 J C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 184 A ASN 276 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 197 A ASN 289 1_555 K C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 A ND2 ASN 203 A ASN 295 1_555 I C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale6 A ND2 ASN 278 A ASN 386 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 A ND2 ASN 332 A ASN 448 1_555 H C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B C ILE 28 L ILE 29 1_555 B N OAS 29 L OAS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 B C OAS 29 L OAS 30 1_555 B N SER 30 L SER 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 C ND2 ASN 80 H ASN 81 1_555 Q C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale11 D C MPT 1 R MPT 1 1_555 D N ASN 2 R ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 sing covale ? covale12 D SG MPT 1 R MPT 1 1_555 D SG CYS 19 R CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? covale ? covale13 D C ALA 20 R ALA 20 1_555 D N DPR 21 R DPR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 sing covale ? covale14 D C DPR 21 R DPR 21 1_555 D N THR 22 R THR 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 sing covale ? covale15 D C THR 22 R THR 22 1_555 D N U2X 23 R U2X 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 sing covale ? covale16 D C U2X 23 R U2X 23 1_555 D N CYS 24 R CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 sing covale ? covale17 D C VAL 27 R VAL 27 1_555 D N NH2 28 R NH2 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU3 _chem_comp.mon_nstd_flag . _chem_comp.name (R,R)-2,3-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C3 BU3 sing 70 n n O6 HO6 BU3 sing 71 n n C3 C4 BU3 sing 72 n n C3 C2 BU3 sing 73 n n C3 H3 BU3 sing 74 n n C4 H41 BU3 sing 75 n n C4 H42 BU3 sing 76 n n C4 H43 BU3 sing 77 n n C2 O5 BU3 sing 78 n n C2 C1 BU3 sing 79 n n C2 H2 BU3 sing 80 n n O5 HO5 BU3 sing 81 n n C1 H11 BU3 sing 82 n n C1 H12 BU3 sing 83 n n C1 H13 BU3 sing 84 n n # _atom_sites.entry_id 4R4F _atom_sites.fract_transf_matrix[1][1] 0.006316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 501 501 NAG NAG . F 5 NAG A 1 502 502 NAG NAG . G 5 NAG A 1 503 503 NAG NAG . H 5 NAG A 1 504 504 NAG NAG . I 5 NAG A 1 505 505 NAG NAG . J 5 NAG A 1 506 506 NAG NAG . K 5 NAG A 1 507 507 NAG NAG . L 6 BU3 A 1 508 508 BU3 BU3 . M 6 BU3 A 1 509 301 BU3 BU3 . N 7 SO4 A 1 510 302 SO4 SO4 . O 6 BU3 L 1 301 303 BU3 BU3 . P 7 SO4 H 1 301 303 SO4 SO4 . Q 5 NAG H 1 302 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 BU3 . . . O 6 -61.022 7.57 41.206 1 245.54 ? O6 BU3 301 L 1 HETATM 2 C C3 BU3 . . . O 6 -60.628 8.7 40.455 1 248.4 ? C3 BU3 301 L 1 HETATM 3 C C4 BU3 . . . O 6 -60.217 9.812 41.4 1 253.14 ? C4 BU3 301 L 1 HETATM 4 C C2 BU3 . . . O 6 -61.763 9.187 39.566 1 249.66 ? C2 BU3 301 L 1 HETATM 5 O O5 BU3 . . . O 6 -62.904 9.421 40.369 1 251.82 ? O5 BU3 301 L 1 HETATM 6 C C1 BU3 . . . O 6 -62.073 8.191 38.457 1 245.34 ? C1 BU3 301 L 1 HETATM 7 H HO6 BU3 . . . O 6 -61.581 7.822 41.85 1 209.1 ? HO6 BU3 301 L 1 HETATM 8 H H3 BU3 . . . O 6 -59.864 8.459 39.894 1 209.1 ? H3 BU3 301 L 1 HETATM 9 H H41 BU3 . . . O 6 -59.355 9.591 41.809 1 209.1 ? H41 BU3 301 L 1 HETATM 10 H H42 BU3 . . . O 6 -60.895 9.913 42.1 1 209.1 ? H42 BU3 301 L 1 HETATM 11 H H43 BU3 . . . O 6 -60.137 10.652 40.901 1 209.1 ? H43 BU3 301 L 1 HETATM 12 H H2 BU3 . . . O 6 -61.494 10.033 39.155 1 209.1 ? H2 BU3 301 L 1 HETATM 13 H HO5 BU3 . . . O 6 -63.095 8.688 40.834 1 209.1 ? HO5 BU3 301 L 1 HETATM 14 H H11 BU3 . . . O 6 -62.585 8.637 37.75 1 209.1 ? H11 BU3 301 L 1 HETATM 15 H H12 BU3 . . . O 6 -62.599 7.448 38.822 1 209.1 ? H12 BU3 301 L 1 HETATM 16 H H13 BU3 . . . O 6 -61.235 7.845 38.084 1 209.1 ? H13 BU3 301 L 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #