data_4R4F # _model_server_result.job_id WaIJ2UDKp2Aw-oP91faquA _model_server_result.datetime_utc '2024-10-17 19:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":505}' # _entry.id 4R4F # _exptl.entry_id 4R4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R4F _cell.length_a 158.321 _cell.length_b 171.23 _cell.length_c 227.974 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 54 1_555 A SG CYS 55 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 100 A CYS 119 1_555 A SG CYS 113 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 126 A CYS 218 1_555 A SG CYS 155 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 136 A CYS 228 1_555 A SG CYS 147 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 204 A CYS 296 1_555 A SG CYS 223 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 270 A CYS 378 1_555 A SG CYS 329 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 277 A CYS 385 1_555 A SG CYS 302 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf9 B SG CYS 132 L CYS 134 1_555 B SG CYS 192 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 C SG CYS 21 H CYS 22 1_555 C SG CYS 94 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 C SG CYS 145 H CYS 140 1_555 C SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 D SG MPT 1 R MPT 1 1_555 D SG CYS 19 R CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf13 D SG CYS 6 R CYS 6 1_555 D SG CYS 24 R CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 D SG CYS 10 R CYS 10 1_555 D SG CYS 26 R CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 142 A ASN 234 1_555 G C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 170 A ASN 262 1_555 J C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 184 A ASN 276 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 197 A ASN 289 1_555 K C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 A ND2 ASN 203 A ASN 295 1_555 I C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale6 A ND2 ASN 278 A ASN 386 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 A ND2 ASN 332 A ASN 448 1_555 H C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B C ILE 28 L ILE 29 1_555 B N OAS 29 L OAS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 B C OAS 29 L OAS 30 1_555 B N SER 30 L SER 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 C ND2 ASN 80 H ASN 81 1_555 Q C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale11 D C MPT 1 R MPT 1 1_555 D N ASN 2 R ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 sing covale ? covale12 D SG MPT 1 R MPT 1 1_555 D SG CYS 19 R CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? covale ? covale13 D C ALA 20 R ALA 20 1_555 D N DPR 21 R DPR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 sing covale ? covale14 D C DPR 21 R DPR 21 1_555 D N THR 22 R THR 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 sing covale ? covale15 D C THR 22 R THR 22 1_555 D N U2X 23 R U2X 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 sing covale ? covale16 D C U2X 23 R U2X 23 1_555 D N CYS 24 R CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 sing covale ? covale17 D C VAL 27 R VAL 27 1_555 D N NH2 28 R NH2 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 278 n n C1 O1 NAG sing 279 n n C1 O5 NAG sing 280 n n C1 H1 NAG sing 281 n n C2 C3 NAG sing 282 n n C2 N2 NAG sing 283 n n C2 H2 NAG sing 284 n n C3 C4 NAG sing 285 n n C3 O3 NAG sing 286 n n C3 H3 NAG sing 287 n n C4 C5 NAG sing 288 n n C4 O4 NAG sing 289 n n C4 H4 NAG sing 290 n n C5 C6 NAG sing 291 n n C5 O5 NAG sing 292 n n C5 H5 NAG sing 293 n n C6 O6 NAG sing 294 n n C6 H61 NAG sing 295 n n C6 H62 NAG sing 296 n n C7 C8 NAG sing 297 n n C7 N2 NAG sing 298 n n C7 O7 NAG doub 299 n n C8 H81 NAG sing 300 n n C8 H82 NAG sing 301 n n C8 H83 NAG sing 302 n n N2 HN2 NAG sing 303 n n O1 HO1 NAG sing 304 n n O3 HO3 NAG sing 305 n n O4 HO4 NAG sing 306 n n O6 HO6 NAG sing 307 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4R4F _atom_sites.fract_transf_matrix[1][1] 0.006316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 501 501 NAG NAG . F 5 NAG A 1 502 502 NAG NAG . G 5 NAG A 1 503 503 NAG NAG . H 5 NAG A 1 504 504 NAG NAG . I 5 NAG A 1 505 505 NAG NAG . J 5 NAG A 1 506 506 NAG NAG . K 5 NAG A 1 507 507 NAG NAG . L 6 BU3 A 1 508 508 BU3 BU3 . M 6 BU3 A 1 509 301 BU3 BU3 . N 7 SO4 A 1 510 302 SO4 SO4 . O 6 BU3 L 1 301 303 BU3 BU3 . P 7 SO4 H 1 301 303 SO4 SO4 . Q 5 NAG H 1 302 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 -12.666 -30.582 26.753 1 248.3 ? C1 NAG 505 A 1 HETATM 2 C C2 NAG . . . I 5 -11.434 -30.76 25.856 1 253.18 ? C2 NAG 505 A 1 HETATM 3 C C3 NAG . . . I 5 -11.473 -29.768 24.689 1 255.91 ? C3 NAG 505 A 1 HETATM 4 C C4 NAG . . . I 5 -12.812 -29.859 23.964 1 254.11 ? C4 NAG 505 A 1 HETATM 5 C C5 NAG . . . I 5 -13.945 -29.679 24.971 1 249.23 ? C5 NAG 505 A 1 HETATM 6 C C6 NAG . . . I 5 -15.321 -29.828 24.369 1 247.3 ? C6 NAG 505 A 1 HETATM 7 C C7 NAG . . . I 5 -9.286 -31.554 26.751 1 256.75 ? C7 NAG 505 A 1 HETATM 8 C C8 NAG . . . I 5 -8.102 -31.213 27.602 1 258.35 ? C8 NAG 505 A 1 HETATM 9 N N2 NAG . . . I 5 -10.214 -30.598 26.632 1 254.77 ? N2 NAG 505 A 1 HETATM 10 O O3 NAG . . . I 5 -10.397 -30.03 23.792 1 260.67 ? O3 NAG 505 A 1 HETATM 11 O O4 NAG . . . I 5 -12.898 -28.867 22.945 1 256.55 ? O4 NAG 505 A 1 HETATM 12 O O5 NAG . . . I 5 -13.84 -30.688 25.982 1 247.04 ? O5 NAG 505 A 1 HETATM 13 O O6 NAG . . . I 5 -16.263 -30.201 25.366 1 243 ? O6 NAG 505 A 1 HETATM 14 O O7 NAG . . . I 5 -9.396 -32.644 26.196 1 257.4 ? O7 NAG 505 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #