data_4R54 # _model_server_result.job_id pgH2GysRi1lnWR720_0Jlw _model_server_result.datetime_utc '2024-10-12 16:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4R54 # _exptl.entry_id 4R54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.16 _cell.angle_gamma 90 _cell.entry_id 4R54 _cell.length_a 59.537 _cell.length_b 98.806 _cell.length_c 64.098 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 274 A ALA 274 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A O PHE 276 A PHE 276 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A O ALA 279 A ALA 279 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc4 A O GLU 343 A GLU 343 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 B OD1 ASP 147 B ASP 147 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc6 B O ASP 147 B ASP 147 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc7 B O SER 236 B SER 236 1_555 H NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc8 H NA NA . B NA 401 1_555 M O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc9 H NA NA . B NA 401 1_555 M O HOH . B HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 H NA NA . B NA 401 1_555 M O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R54 _atom_sites.fract_transf_matrix[1][1] 0.016796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003312 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 2 NA NA . D 2 NA A 1 402 3 NA NA . E 3 NAP A 1 403 1 NAP NAP . F 4 ACT A 1 404 1 ACT ACT . G 5 3JM A 1 405 1 3JM 3PR . H 2 NA B 1 401 1 NA NA . I 3 NAP B 1 402 2 NAP NAP . J 3 NAP B 1 403 3 NAP NAP . K 4 ACT B 1 404 2 ACT ACT . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 2 HOH HOH . L 6 HOH A 3 503 3 HOH HOH . L 6 HOH A 4 504 4 HOH HOH . L 6 HOH A 5 505 5 HOH HOH . L 6 HOH A 6 506 6 HOH HOH . L 6 HOH A 7 507 7 HOH HOH . L 6 HOH A 8 508 9 HOH HOH . L 6 HOH A 9 509 11 HOH HOH . L 6 HOH A 10 510 15 HOH HOH . L 6 HOH A 11 511 17 HOH HOH . L 6 HOH A 12 512 18 HOH HOH . L 6 HOH A 13 513 21 HOH HOH . L 6 HOH A 14 514 24 HOH HOH . L 6 HOH A 15 515 27 HOH HOH . L 6 HOH A 16 516 28 HOH HOH . L 6 HOH A 17 517 30 HOH HOH . L 6 HOH A 18 518 31 HOH HOH . L 6 HOH A 19 519 33 HOH HOH . L 6 HOH A 20 520 34 HOH HOH . L 6 HOH A 21 521 35 HOH HOH . L 6 HOH A 22 522 36 HOH HOH . L 6 HOH A 23 523 38 HOH HOH . L 6 HOH A 24 524 40 HOH HOH . L 6 HOH A 25 525 41 HOH HOH . L 6 HOH A 26 526 42 HOH HOH . L 6 HOH A 27 527 43 HOH HOH . L 6 HOH A 28 528 44 HOH HOH . L 6 HOH A 29 529 45 HOH HOH . L 6 HOH A 30 530 47 HOH HOH . L 6 HOH A 31 531 48 HOH HOH . L 6 HOH A 32 532 50 HOH HOH . L 6 HOH A 33 533 51 HOH HOH . L 6 HOH A 34 534 53 HOH HOH . L 6 HOH A 35 535 55 HOH HOH . L 6 HOH A 36 536 56 HOH HOH . L 6 HOH A 37 537 58 HOH HOH . L 6 HOH A 38 538 59 HOH HOH . L 6 HOH A 39 539 61 HOH HOH . L 6 HOH A 40 540 62 HOH HOH . L 6 HOH A 41 541 63 HOH HOH . L 6 HOH A 42 542 64 HOH HOH . L 6 HOH A 43 543 65 HOH HOH . L 6 HOH A 44 544 66 HOH HOH . L 6 HOH A 45 545 67 HOH HOH . L 6 HOH A 46 546 68 HOH HOH . L 6 HOH A 47 547 69 HOH HOH . L 6 HOH A 48 548 71 HOH HOH . L 6 HOH A 49 549 73 HOH HOH . L 6 HOH A 50 550 74 HOH HOH . L 6 HOH A 51 551 75 HOH HOH . L 6 HOH A 52 552 76 HOH HOH . L 6 HOH A 53 553 78 HOH HOH . L 6 HOH A 54 554 80 HOH HOH . L 6 HOH A 55 555 81 HOH HOH . L 6 HOH A 56 556 83 HOH HOH . L 6 HOH A 57 557 85 HOH HOH . L 6 HOH A 58 558 86 HOH HOH . L 6 HOH A 59 559 88 HOH HOH . L 6 HOH A 60 560 89 HOH HOH . L 6 HOH A 61 561 90 HOH HOH . L 6 HOH A 62 562 92 HOH HOH . L 6 HOH A 63 563 93 HOH HOH . L 6 HOH A 64 564 95 HOH HOH . L 6 HOH A 65 565 97 HOH HOH . L 6 HOH A 66 566 99 HOH HOH . L 6 HOH A 67 567 100 HOH HOH . L 6 HOH A 68 568 101 HOH HOH . L 6 HOH A 69 569 102 HOH HOH . L 6 HOH A 70 570 104 HOH HOH . L 6 HOH A 71 571 105 HOH HOH . L 6 HOH A 72 572 107 HOH HOH . L 6 HOH A 73 573 109 HOH HOH . L 6 HOH A 74 574 111 HOH HOH . L 6 HOH A 75 575 112 HOH HOH . L 6 HOH A 76 576 113 HOH HOH . L 6 HOH A 77 577 114 HOH HOH . L 6 HOH A 78 578 115 HOH HOH . L 6 HOH A 79 579 116 HOH HOH . L 6 HOH A 80 580 118 HOH HOH . L 6 HOH A 81 581 120 HOH HOH . L 6 HOH A 82 582 121 HOH HOH . L 6 HOH A 83 583 122 HOH HOH . L 6 HOH A 84 584 123 HOH HOH . L 6 HOH A 85 585 125 HOH HOH . L 6 HOH A 86 586 126 HOH HOH . L 6 HOH A 87 587 128 HOH HOH . L 6 HOH A 88 588 130 HOH HOH . L 6 HOH A 89 589 131 HOH HOH . L 6 HOH A 90 590 132 HOH HOH . L 6 HOH A 91 591 134 HOH HOH . L 6 HOH A 92 592 135 HOH HOH . L 6 HOH A 93 593 160 HOH HOH . L 6 HOH A 94 594 179 HOH HOH . L 6 HOH A 95 595 204 HOH HOH . L 6 HOH A 96 596 205 HOH HOH . L 6 HOH A 97 597 206 HOH HOH . L 6 HOH A 98 598 207 HOH HOH . L 6 HOH A 99 599 208 HOH HOH . L 6 HOH A 100 600 209 HOH HOH . L 6 HOH A 101 601 210 HOH HOH . L 6 HOH A 102 602 211 HOH HOH . L 6 HOH A 103 603 212 HOH HOH . L 6 HOH A 104 604 213 HOH HOH . L 6 HOH A 105 605 215 HOH HOH . L 6 HOH A 106 606 216 HOH HOH . L 6 HOH A 107 607 217 HOH HOH . L 6 HOH A 108 608 219 HOH HOH . L 6 HOH A 109 609 221 HOH HOH . L 6 HOH A 110 610 222 HOH HOH . L 6 HOH A 111 611 223 HOH HOH . L 6 HOH A 112 612 224 HOH HOH . L 6 HOH A 113 613 225 HOH HOH . L 6 HOH A 114 614 226 HOH HOH . L 6 HOH A 115 615 227 HOH HOH . L 6 HOH A 116 616 228 HOH HOH . L 6 HOH A 117 617 229 HOH HOH . L 6 HOH A 118 618 230 HOH HOH . L 6 HOH A 119 619 232 HOH HOH . L 6 HOH A 120 620 233 HOH HOH . L 6 HOH A 121 621 235 HOH HOH . L 6 HOH A 122 622 236 HOH HOH . L 6 HOH A 123 623 237 HOH HOH . L 6 HOH A 124 624 238 HOH HOH . L 6 HOH A 125 625 240 HOH HOH . L 6 HOH A 126 626 241 HOH HOH . L 6 HOH A 127 627 242 HOH HOH . L 6 HOH A 128 628 244 HOH HOH . L 6 HOH A 129 629 245 HOH HOH . L 6 HOH A 130 630 246 HOH HOH . L 6 HOH A 131 631 248 HOH HOH . L 6 HOH A 132 632 250 HOH HOH . L 6 HOH A 133 633 251 HOH HOH . L 6 HOH A 134 634 252 HOH HOH . L 6 HOH A 135 635 253 HOH HOH . L 6 HOH A 136 636 254 HOH HOH . L 6 HOH A 137 637 256 HOH HOH . L 6 HOH A 138 638 260 HOH HOH . L 6 HOH A 139 639 261 HOH HOH . M 6 HOH B 1 501 8 HOH HOH . M 6 HOH B 2 502 10 HOH HOH . M 6 HOH B 3 503 12 HOH HOH . M 6 HOH B 4 504 13 HOH HOH . M 6 HOH B 5 505 14 HOH HOH . M 6 HOH B 6 506 16 HOH HOH . M 6 HOH B 7 507 19 HOH HOH . M 6 HOH B 8 508 20 HOH HOH . M 6 HOH B 9 509 22 HOH HOH . M 6 HOH B 10 510 23 HOH HOH . M 6 HOH B 11 511 25 HOH HOH . M 6 HOH B 12 512 26 HOH HOH . M 6 HOH B 13 513 29 HOH HOH . M 6 HOH B 14 514 32 HOH HOH . M 6 HOH B 15 515 37 HOH HOH . M 6 HOH B 16 516 39 HOH HOH . M 6 HOH B 17 517 46 HOH HOH . M 6 HOH B 18 518 49 HOH HOH . M 6 HOH B 19 519 52 HOH HOH . M 6 HOH B 20 520 54 HOH HOH . M 6 HOH B 21 521 57 HOH HOH . M 6 HOH B 22 522 60 HOH HOH . M 6 HOH B 23 523 70 HOH HOH . M 6 HOH B 24 524 72 HOH HOH . M 6 HOH B 25 525 77 HOH HOH . M 6 HOH B 26 526 79 HOH HOH . M 6 HOH B 27 527 82 HOH HOH . M 6 HOH B 28 528 84 HOH HOH . M 6 HOH B 29 529 87 HOH HOH . M 6 HOH B 30 530 91 HOH HOH . M 6 HOH B 31 531 94 HOH HOH . M 6 HOH B 32 532 96 HOH HOH . M 6 HOH B 33 533 98 HOH HOH . M 6 HOH B 34 534 103 HOH HOH . M 6 HOH B 35 535 106 HOH HOH . M 6 HOH B 36 536 108 HOH HOH . M 6 HOH B 37 537 110 HOH HOH . M 6 HOH B 38 538 117 HOH HOH . M 6 HOH B 39 539 119 HOH HOH . M 6 HOH B 40 540 124 HOH HOH . M 6 HOH B 41 541 127 HOH HOH . M 6 HOH B 42 542 129 HOH HOH . M 6 HOH B 43 543 133 HOH HOH . M 6 HOH B 44 544 136 HOH HOH . M 6 HOH B 45 545 137 HOH HOH . M 6 HOH B 46 546 138 HOH HOH . M 6 HOH B 47 547 139 HOH HOH . M 6 HOH B 48 548 140 HOH HOH . M 6 HOH B 49 549 141 HOH HOH . M 6 HOH B 50 550 142 HOH HOH . M 6 HOH B 51 551 143 HOH HOH . M 6 HOH B 52 552 144 HOH HOH . M 6 HOH B 53 553 145 HOH HOH . M 6 HOH B 54 554 146 HOH HOH . M 6 HOH B 55 555 147 HOH HOH . M 6 HOH B 56 556 148 HOH HOH . M 6 HOH B 57 557 149 HOH HOH . M 6 HOH B 58 558 150 HOH HOH . M 6 HOH B 59 559 151 HOH HOH . M 6 HOH B 60 560 152 HOH HOH . M 6 HOH B 61 561 153 HOH HOH . M 6 HOH B 62 562 154 HOH HOH . M 6 HOH B 63 563 155 HOH HOH . M 6 HOH B 64 564 156 HOH HOH . M 6 HOH B 65 565 157 HOH HOH . M 6 HOH B 66 566 158 HOH HOH . M 6 HOH B 67 567 159 HOH HOH . M 6 HOH B 68 568 161 HOH HOH . M 6 HOH B 69 569 162 HOH HOH . M 6 HOH B 70 570 163 HOH HOH . M 6 HOH B 71 571 164 HOH HOH . M 6 HOH B 72 572 165 HOH HOH . M 6 HOH B 73 573 166 HOH HOH . M 6 HOH B 74 574 167 HOH HOH . M 6 HOH B 75 575 168 HOH HOH . M 6 HOH B 76 576 169 HOH HOH . M 6 HOH B 77 577 170 HOH HOH . M 6 HOH B 78 578 171 HOH HOH . M 6 HOH B 79 579 172 HOH HOH . M 6 HOH B 80 580 173 HOH HOH . M 6 HOH B 81 581 174 HOH HOH . M 6 HOH B 82 582 175 HOH HOH . M 6 HOH B 83 583 176 HOH HOH . M 6 HOH B 84 584 177 HOH HOH . M 6 HOH B 85 585 178 HOH HOH . M 6 HOH B 86 586 180 HOH HOH . M 6 HOH B 87 587 181 HOH HOH . M 6 HOH B 88 588 182 HOH HOH . M 6 HOH B 89 589 183 HOH HOH . M 6 HOH B 90 590 184 HOH HOH . M 6 HOH B 91 591 185 HOH HOH . M 6 HOH B 92 592 186 HOH HOH . M 6 HOH B 93 593 187 HOH HOH . M 6 HOH B 94 594 188 HOH HOH . M 6 HOH B 95 595 189 HOH HOH . M 6 HOH B 96 596 190 HOH HOH . M 6 HOH B 97 597 191 HOH HOH . M 6 HOH B 98 598 192 HOH HOH . M 6 HOH B 99 599 193 HOH HOH . M 6 HOH B 100 600 194 HOH HOH . M 6 HOH B 101 601 195 HOH HOH . M 6 HOH B 102 602 196 HOH HOH . M 6 HOH B 103 603 197 HOH HOH . M 6 HOH B 104 604 198 HOH HOH . M 6 HOH B 105 605 199 HOH HOH . M 6 HOH B 106 606 200 HOH HOH . M 6 HOH B 107 607 201 HOH HOH . M 6 HOH B 108 608 202 HOH HOH . M 6 HOH B 109 609 203 HOH HOH . M 6 HOH B 110 610 214 HOH HOH . M 6 HOH B 111 611 218 HOH HOH . M 6 HOH B 112 612 220 HOH HOH . M 6 HOH B 113 613 231 HOH HOH . M 6 HOH B 114 614 234 HOH HOH . M 6 HOH B 115 615 239 HOH HOH . M 6 HOH B 116 616 243 HOH HOH . M 6 HOH B 117 617 247 HOH HOH . M 6 HOH B 118 618 249 HOH HOH . M 6 HOH B 119 619 255 HOH HOH . M 6 HOH B 120 620 257 HOH HOH . M 6 HOH B 121 621 258 HOH HOH . M 6 HOH B 122 622 259 HOH HOH . M 6 HOH B 123 623 262 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.629 _atom_site.Cartn_y 3.899 _atom_site.Cartn_z 34.086 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #