data_4R5W
#
_model_server_result.job_id            OqTZD7_erA_A5vqIFrjHJw 
_model_server_result.datetime_utc      '2024-11-30 03:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1103}' 
#
_entry.id    4R5W 
#
_exptl.entry_id    4R5W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              312.31 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-(trifluoromethyl)phenyl]-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.28 
_cell.angle_gamma         90 
_cell.entry_id            4R5W 
_cell.length_a            74.525 
_cell.length_b            67.662 
_cell.length_c            91.165 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R5W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,L 1 1 
B,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
#
_chem_comp.formula           'C14 H11 F3 N2 O S' 
_chem_comp.formula_weight    312.31 
_chem_comp.id                XAV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-(trifluoromethyl)phenyl]-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 XAV sing 380 n y 
N1 C6 XAV doub 381 n y 
C2 N3 XAV doub 382 n y 
C2 CAP XAV sing 383 n y 
N3 C4 XAV sing 384 n y 
C4 C5 XAV doub 385 n y 
C4 CAJ XAV sing 386 n n 
C5 C6 XAV sing 387 n y 
C5 CAK XAV sing 388 n n 
C6 O6 XAV sing 389 n n 
FAB CAU XAV sing 390 n n 
FAC CAU XAV sing 391 n n 
FAD CAU XAV sing 392 n n 
CAE CAG XAV doub 393 n y 
CAE CAP XAV sing 394 n y 
CAF CAH XAV sing 395 n y 
CAF CAP XAV doub 396 n y 
CAG CAQ XAV sing 397 n y 
CAH CAQ XAV doub 398 n y 
CAI CAJ XAV sing 399 n n 
CAI SAN XAV sing 400 n n 
CAK SAN XAV sing 401 n n 
CAQ CAU XAV sing 402 n n 
O6 HO6 XAV sing 403 n n 
CAE HAE XAV sing 404 n n 
CAF HAF XAV sing 405 n n 
CAG HAG XAV sing 406 n n 
CAH HAH XAV sing 407 n n 
CAI HAI XAV sing 408 n n 
CAI HAIA XAV sing 409 n n 
CAJ HAJ XAV sing 410 n n 
CAJ HAJA XAV sing 411 n n 
CAK HAK XAV sing 412 n n 
CAK HAKA XAV sing 413 n n 
#
_atom_sites.entry_id                     4R5W 
_atom_sites.fract_transf_matrix[1][1]    0.013418 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005226 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1101 1 SO4 SO4 . 
D 2 SO4 A 1 1102 4 SO4 SO4 . 
E 2 SO4 A 1 1103 5 SO4 SO4 . 
F 2 SO4 A 1 1104 6 SO4 SO4 . 
G 2 SO4 A 1 1105 7 SO4 SO4 . 
H 3 XAV A 1 1106 502 XAV XAV . 
I 2 SO4 B 1 1101 2 SO4 SO4 . 
J 2 SO4 B 1 1102 3 SO4 SO4 . 
K 3 XAV B 1 1103 501 XAV XAV . 
L 4 HOH A 1 1201 4 HOH HOH . 
L 4 HOH A 2 1202 8 HOH HOH . 
L 4 HOH A 3 1203 9 HOH HOH . 
L 4 HOH A 4 1204 10 HOH HOH . 
L 4 HOH A 5 1205 11 HOH HOH . 
M 4 HOH B 1 1201 1 HOH HOH . 
M 4 HOH B 2 1202 2 HOH HOH . 
M 4 HOH B 3 1203 3 HOH HOH . 
M 4 HOH B 4 1204 5 HOH HOH . 
M 4 HOH B 5 1205 6 HOH HOH . 
M 4 HOH B 6 1206 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XAV . . . K 3 19.942 -2.185 -21.999 1 47.19 ? N1 XAV 1103 B 1 
HETATM 2 C C2 XAV . . . K 3 19.546 -2.903 -20.952 1 51.72 ? C2 XAV 1103 B 1 
HETATM 3 N N3 XAV . . . K 3 19.884 -2.501 -19.697 1 50.07 ? N3 XAV 1103 B 1 
HETATM 4 C C4 XAV . . . K 3 20.629 -1.44 -19.498 1 48.88 ? C4 XAV 1103 B 1 
HETATM 5 C C5 XAV . . . K 3 21.072 -0.662 -20.614 1 46.8 ? C5 XAV 1103 B 1 
HETATM 6 C C6 XAV . . . K 3 20.678 -1.105 -21.852 1 44.36 ? C6 XAV 1103 B 1 
HETATM 7 O O6 XAV . . . K 3 21.069 -0.438 -22.899 1 44 ? O6 XAV 1103 B 1 
HETATM 8 F FAB XAV . . . K 3 16.182 -7.994 -20.203 1 71.58 ? FAB XAV 1103 B 1 
HETATM 9 F FAC XAV . . . K 3 14.811 -6.999 -21.706 1 73.08 ? FAC XAV 1103 B 1 
HETATM 10 F FAD XAV . . . K 3 16.458 -8.363 -22.294 1 76.03 ? FAD XAV 1103 B 1 
HETATM 11 C CAE XAV . . . K 3 18.838 -4.895 -22.206 1 61.02 ? CAE XAV 1103 B 1 
HETATM 12 C CAF XAV . . . K 3 17.767 -4.3 -20.143 1 63.03 ? CAF XAV 1103 B 1 
HETATM 13 C CAG XAV . . . K 3 17.987 -6.006 -22.351 1 64.69 ? CAG XAV 1103 B 1 
HETATM 14 C CAH XAV . . . K 3 16.921 -5.395 -20.268 1 65.35 ? CAH XAV 1103 B 1 
HETATM 15 C CAI XAV . . . K 3 22.109 -0.225 -17.851 1 50.36 ? CAI XAV 1103 B 1 
HETATM 16 C CAJ XAV . . . K 3 20.944 -1.181 -18.023 1 48.98 ? CAJ XAV 1103 B 1 
HETATM 17 C CAK XAV . . . K 3 21.934 0.566 -20.517 1 49.55 ? CAK XAV 1103 B 1 
HETATM 18 S SAN XAV . . . K 3 21.84 1.317 -18.864 1 52.74 ? SAN XAV 1103 B 1 
HETATM 19 C CAP XAV . . . K 3 18.747 -4.029 -21.12 1 58.36 ? CAP XAV 1103 B 1 
HETATM 20 C CAQ XAV . . . K 3 17.026 -6.241 -21.359 1 67.86 ? CAQ XAV 1103 B 1 
HETATM 21 C CAU XAV . . . K 3 16.066 -7.441 -21.409 1 72.61 ? CAU XAV 1103 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#