data_4R5W # _model_server_result.job_id 3sNcxpOrd89IY5_9_ZhLDg _model_server_result.datetime_utc '2024-11-26 18:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 4R5W # _exptl.entry_id 4R5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.31 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(trifluoromethyl)phenyl]-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.28 _cell.angle_gamma 90 _cell.entry_id 4R5W _cell.length_a 74.525 _cell.length_b 67.662 _cell.length_c 91.165 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N # _chem_comp.formula 'C14 H11 F3 N2 O S' _chem_comp.formula_weight 312.31 _chem_comp.id XAV _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(trifluoromethyl)phenyl]-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 XAV sing 380 n y N1 C6 XAV doub 381 n y C2 N3 XAV doub 382 n y C2 CAP XAV sing 383 n y N3 C4 XAV sing 384 n y C4 C5 XAV doub 385 n y C4 CAJ XAV sing 386 n n C5 C6 XAV sing 387 n y C5 CAK XAV sing 388 n n C6 O6 XAV sing 389 n n FAB CAU XAV sing 390 n n FAC CAU XAV sing 391 n n FAD CAU XAV sing 392 n n CAE CAG XAV doub 393 n y CAE CAP XAV sing 394 n y CAF CAH XAV sing 395 n y CAF CAP XAV doub 396 n y CAG CAQ XAV sing 397 n y CAH CAQ XAV doub 398 n y CAI CAJ XAV sing 399 n n CAI SAN XAV sing 400 n n CAK SAN XAV sing 401 n n CAQ CAU XAV sing 402 n n O6 HO6 XAV sing 403 n n CAE HAE XAV sing 404 n n CAF HAF XAV sing 405 n n CAG HAG XAV sing 406 n n CAH HAH XAV sing 407 n n CAI HAI XAV sing 408 n n CAI HAIA XAV sing 409 n n CAJ HAJ XAV sing 410 n n CAJ HAJA XAV sing 411 n n CAK HAK XAV sing 412 n n CAK HAKA XAV sing 413 n n # _atom_sites.entry_id 4R5W _atom_sites.fract_transf_matrix[1][1] 0.013418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1101 1 SO4 SO4 . D 2 SO4 A 1 1102 4 SO4 SO4 . E 2 SO4 A 1 1103 5 SO4 SO4 . F 2 SO4 A 1 1104 6 SO4 SO4 . G 2 SO4 A 1 1105 7 SO4 SO4 . H 3 XAV A 1 1106 502 XAV XAV . I 2 SO4 B 1 1101 2 SO4 SO4 . J 2 SO4 B 1 1102 3 SO4 SO4 . K 3 XAV B 1 1103 501 XAV XAV . L 4 HOH A 1 1201 4 HOH HOH . L 4 HOH A 2 1202 8 HOH HOH . L 4 HOH A 3 1203 9 HOH HOH . L 4 HOH A 4 1204 10 HOH HOH . L 4 HOH A 5 1205 11 HOH HOH . M 4 HOH B 1 1201 1 HOH HOH . M 4 HOH B 2 1202 2 HOH HOH . M 4 HOH B 3 1203 3 HOH HOH . M 4 HOH B 4 1204 5 HOH HOH . M 4 HOH B 5 1205 6 HOH HOH . M 4 HOH B 6 1206 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XAV . . . H 3 -21.581 -7.774 -18.102 1 45.78 ? N1 XAV 1106 A 1 HETATM 2 C C2 XAV . . . H 3 -21.1 -6.571 -18.44 1 48.99 ? C2 XAV 1106 A 1 HETATM 3 N N3 XAV . . . H 3 -21.419 -5.451 -17.723 1 46.93 ? N3 XAV 1106 A 1 HETATM 4 C C4 XAV . . . H 3 -22.2 -5.531 -16.691 1 46.02 ? C4 XAV 1106 A 1 HETATM 5 C C5 XAV . . . H 3 -22.748 -6.804 -16.273 1 43.85 ? C5 XAV 1106 A 1 HETATM 6 C C6 XAV . . . H 3 -22.402 -7.902 -17.025 1 43.37 ? C6 XAV 1106 A 1 HETATM 7 O O6 XAV . . . H 3 -22.888 -9.06 -16.639 1 42.27 ? O6 XAV 1106 A 1 HETATM 8 F FAB XAV . . . H 3 -17.648 -3.796 -22.698 1 65.24 ? FAB XAV 1106 A 1 HETATM 9 F FAC XAV . . . H 3 -16.409 -5.718 -22.512 1 60.01 ? FAC XAV 1106 A 1 HETATM 10 F FAD XAV . . . H 3 -18.305 -5.539 -23.92 1 65.37 ? FAD XAV 1106 A 1 HETATM 11 C CAE XAV . . . H 3 -20.678 -6.557 -20.811 1 54.59 ? CAE XAV 1106 A 1 HETATM 12 C CAF XAV . . . H 3 -19.038 -5.653 -19.236 1 57.04 ? CAF XAV 1106 A 1 HETATM 13 C CAG XAV . . . H 3 -19.833 -6.204 -21.876 1 56.36 ? CAG XAV 1106 A 1 HETATM 14 C CAH XAV . . . H 3 -18.212 -5.294 -20.306 1 58.88 ? CAH XAV 1106 A 1 HETATM 15 C CAI XAV . . . H 3 -23.644 -4.265 -15.19 1 47.24 ? CAI XAV 1106 A 1 HETATM 16 C CAJ XAV . . . H 3 -22.429 -4.18 -16.073 1 46.34 ? CAJ XAV 1106 A 1 HETATM 17 C CAK XAV . . . H 3 -23.637 -7.013 -15.121 1 44.51 ? CAK XAV 1106 A 1 HETATM 18 S SAN XAV . . . H 3 -23.341 -5.633 -14.025 1 48.26 ? SAN XAV 1106 A 1 HETATM 19 C CAP XAV . . . H 3 -20.286 -6.295 -19.5 1 53.8 ? CAP XAV 1106 A 1 HETATM 20 C CAQ XAV . . . H 3 -18.607 -5.58 -21.611 1 59.53 ? CAQ XAV 1106 A 1 HETATM 21 C CAU XAV . . . H 3 -17.672 -5.163 -22.751 1 63.3 ? CAU XAV 1106 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #