data_4R5Y # _model_server_result.job_id LS1EI68RtnHqO02LE4iBRg _model_server_result.datetime_utc '2024-11-22 04:54:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4R5Y # _exptl.entry_id 4R5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.423 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R5Y _cell.length_a 49.395 _cell.length_b 101.601 _cell.length_c 109.786 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H17 F3 N4 O3' _chem_comp.formula_weight 478.423 _chem_comp.id 3K3 _chem_comp.mon_nstd_flag . _chem_comp.name 5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C19 3K3 sing 1 n n C17 C16 3K3 doub 2 n y C17 C18 3K3 sing 3 n y C16 C15 3K3 sing 4 n y C19 C18 3K3 sing 5 n n C19 F1 3K3 sing 6 n n C19 F2 3K3 sing 7 n n C18 C20 3K3 doub 8 n y C15 N 3K3 sing 9 n y C15 C21 3K3 doub 10 n y N C14 3K3 sing 11 n y C20 C21 3K3 sing 12 n y C21 N1 3K3 sing 13 n y C9 O2 3K3 sing 14 n n C9 C13 3K3 sing 15 n n C9 C10 3K3 sing 16 n n O2 C8 3K3 sing 17 n n C14 N1 3K3 doub 18 n y C14 C13 3K3 sing 19 n n C13 C10 3K3 sing 20 n n C10 C11 3K3 sing 21 n n C8 C7 3K3 doub 22 n y C8 C11 3K3 sing 23 n y C7 C6 3K3 sing 24 n y C11 C12 3K3 doub 25 n y C6 C5 3K3 doub 26 n y C12 C5 3K3 sing 27 n y C5 O1 3K3 sing 28 n n O1 C4 3K3 sing 29 n n C22 C4 3K3 doub 30 n y C22 C23 3K3 sing 31 n y C4 C3 3K3 sing 32 n y C23 N2 3K3 doub 33 n y C3 C2 3K3 sing 34 n n C3 C24 3K3 doub 35 n y N2 C24 3K3 sing 36 n y C2 C1 3K3 sing 37 n n C24 N3 3K3 sing 38 n n C1 C 3K3 sing 39 n n N3 C 3K3 sing 40 n n C O 3K3 doub 41 n n C17 H1 3K3 sing 42 n n C16 H2 3K3 sing 43 n n C20 H3 3K3 sing 44 n n N H4 3K3 sing 45 n n C13 H6 3K3 sing 46 n n C9 H7 3K3 sing 47 n n C10 H8 3K3 sing 48 n n C7 H9 3K3 sing 49 n n C6 H10 3K3 sing 50 n n C12 H11 3K3 sing 51 n n C22 H12 3K3 sing 52 n n C23 H13 3K3 sing 53 n n N3 H14 3K3 sing 54 n n C2 H15 3K3 sing 55 n n C2 H16 3K3 sing 56 n n C1 H17 3K3 sing 57 n n C1 H18 3K3 sing 58 n n # _atom_sites.entry_id 4R5Y _atom_sites.fract_transf_matrix[1][1] 0.020245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3K3 A 1 801 1 3K3 DUM . D 2 3K3 B 1 801 1 3K3 DUM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F2 3K3 . . . C 2 24.859 13.297 -18.46 1 49.31 ? F2 3K3 801 A 1 HETATM 2 C C19 3K3 . . . C 2 24.066 12.246 -18.574 1 49.74 ? C19 3K3 801 A 1 HETATM 3 F F 3K3 . . . C 2 24.39 11.565 -19.667 1 49.85 ? F 3K3 801 A 1 HETATM 4 F F1 3K3 . . . C 2 24.26 11.466 -17.525 1 49.12 ? F1 3K3 801 A 1 HETATM 5 C C18 3K3 . . . C 2 22.612 12.664 -18.607 1 50.19 ? C18 3K3 801 A 1 HETATM 6 C C17 3K3 . . . C 2 22.132 13.716 -19.395 1 50.86 ? C17 3K3 801 A 1 HETATM 7 C C16 3K3 . . . C 2 20.775 14.057 -19.389 1 51.13 ? C16 3K3 801 A 1 HETATM 8 C C20 3K3 . . . C 2 21.716 11.956 -17.82 1 50.14 ? C20 3K3 801 A 1 HETATM 9 C C21 3K3 . . . C 2 20.367 12.294 -17.812 1 51.06 ? C21 3K3 801 A 1 HETATM 10 C C15 3K3 . . . C 2 19.882 13.339 -18.591 1 51.11 ? C15 3K3 801 A 1 HETATM 11 N N 3K3 . . . C 2 18.536 13.418 -18.369 1 51.01 ? N 3K3 801 A 1 HETATM 12 N N1 3K3 . . . C 2 19.32 11.774 -17.153 1 51.34 ? N1 3K3 801 A 1 HETATM 13 C C14 3K3 . . . C 2 18.203 12.453 -17.47 1 50.95 ? C14 3K3 801 A 1 HETATM 14 C C13 3K3 . . . C 2 16.866 12.109 -16.912 1 50.79 ? C13 3K3 801 A 1 HETATM 15 C C9 3K3 . . . C 2 15.741 12.762 -17.716 1 50.98 ? C9 3K3 801 A 1 HETATM 16 O O2 3K3 . . . C 2 14.487 12.065 -17.536 1 50.79 ? O2 3K3 801 A 1 HETATM 17 C C10 3K3 . . . C 2 16.111 13.294 -16.322 1 50.82 ? C10 3K3 801 A 1 HETATM 18 C C11 3K3 . . . C 2 15.017 12.762 -15.473 1 50.36 ? C11 3K3 801 A 1 HETATM 19 C C8 3K3 . . . C 2 14.121 12.053 -16.219 1 50.39 ? C8 3K3 801 A 1 HETATM 20 C C7 3K3 . . . C 2 13.009 11.447 -15.654 1 50.07 ? C7 3K3 801 A 1 HETATM 21 C C6 3K3 . . . C 2 12.837 11.579 -14.275 1 50.09 ? C6 3K3 801 A 1 HETATM 22 C C12 3K3 . . . C 2 14.872 12.889 -14.098 1 49.95 ? C12 3K3 801 A 1 HETATM 23 C C5 3K3 . . . C 2 13.764 12.285 -13.499 1 49.91 ? C5 3K3 801 A 1 HETATM 24 O O1 3K3 . . . C 2 13.566 12.411 -12.145 1 49.61 ? O1 3K3 801 A 1 HETATM 25 C C4 3K3 . . . C 2 13.81 11.387 -11.261 1 49.56 ? C4 3K3 801 A 1 HETATM 26 C C22 3K3 . . . C 2 14.146 10.107 -11.693 1 49.24 ? C22 3K3 801 A 1 HETATM 27 C C23 3K3 . . . C 2 14.389 9.111 -10.756 1 48.8 ? C23 3K3 801 A 1 HETATM 28 N N2 3K3 . . . C 2 14.307 9.379 -9.444 1 49.1 ? N2 3K3 801 A 1 HETATM 29 C C24 3K3 . . . C 2 13.99 10.619 -9 1 49.42 ? C24 3K3 801 A 1 HETATM 30 N N3 3K3 . . . C 2 13.909 10.888 -7.675 1 49.02 ? N3 3K3 801 A 1 HETATM 31 C C 3K3 . . . C 2 13.032 11.78 -7.206 1 49.05 ? C 3K3 801 A 1 HETATM 32 O O 3K3 . . . C 2 12.671 11.793 -6.041 1 49.08 ? O 3K3 801 A 1 HETATM 33 C C3 3K3 . . . C 2 13.737 11.632 -9.902 1 49.47 ? C3 3K3 801 A 1 HETATM 34 C C2 3K3 . . . C 2 13.387 12.997 -9.373 1 49.43 ? C2 3K3 801 A 1 HETATM 35 C C1 3K3 . . . C 2 12.477 12.808 -8.167 1 49.32 ? C1 3K3 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #