data_4R69 # _model_server_result.job_id EEzQGnrKgrIl_OpvjBWg2A _model_server_result.datetime_utc '2024-11-28 08:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4R69 # _exptl.entry_id 4R69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.49 _cell.angle_gamma 90 _cell.entry_id 4R69 _cell.length_a 75.007 _cell.length_b 80.682 _cell.length_c 101.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 N N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 268 n n PA O2A NAI sing 269 n n PA O5B NAI sing 270 n n PA O3 NAI sing 271 n n O2A HOA2 NAI sing 272 n n O5B C5B NAI sing 273 n n C5B C4B NAI sing 274 n n C5B H51A NAI sing 275 n n C5B H52A NAI sing 276 n n C4B O4B NAI sing 277 n n C4B C3B NAI sing 278 n n C4B H4B NAI sing 279 n n O4B C1B NAI sing 280 n n C3B O3B NAI sing 281 n n C3B C2B NAI sing 282 n n C3B H3B NAI sing 283 n n O3B HO3A NAI sing 284 n n C2B O2B NAI sing 285 n n C2B C1B NAI sing 286 n n C2B H2B NAI sing 287 n n O2B HO2A NAI sing 288 n n C1B N9A NAI sing 289 n n C1B H1B NAI sing 290 n n N9A C8A NAI sing 291 n y N9A C4A NAI sing 292 n y C8A N7A NAI doub 293 n y C8A H8A NAI sing 294 n n N7A C5A NAI sing 295 n y C5A C6A NAI sing 296 n y C5A C4A NAI doub 297 n y C6A N6A NAI sing 298 n n C6A N1A NAI doub 299 n y N6A H61A NAI sing 300 n n N6A H62A NAI sing 301 n n N1A C2A NAI sing 302 n y C2A N3A NAI doub 303 n y C2A H2A NAI sing 304 n n N3A C4A NAI sing 305 n y O3 PN NAI sing 306 n n PN O1N NAI sing 307 n n PN O2N NAI doub 308 n n PN O5D NAI sing 309 n n O1N HO1N NAI sing 310 n n O5D C5D NAI sing 311 n n C5D C4D NAI sing 312 n n C5D H51N NAI sing 313 n n C5D H52N NAI sing 314 n n C4D O4D NAI sing 315 n n C4D C3D NAI sing 316 n n C4D H4D NAI sing 317 n n O4D C1D NAI sing 318 n n C3D O3D NAI sing 319 n n C3D C2D NAI sing 320 n n C3D H3D NAI sing 321 n n O3D HO3N NAI sing 322 n n C2D O2D NAI sing 323 n n C2D C1D NAI sing 324 n n C2D H2D NAI sing 325 n n O2D HO2N NAI sing 326 n n C1D N1N NAI sing 327 n n C1D H1D NAI sing 328 n n N1N C2N NAI sing 329 n n N1N C6N NAI sing 330 n n C2N C3N NAI doub 331 n n C2N H2N NAI sing 332 n n C3N C7N NAI sing 333 n n C3N C4N NAI sing 334 n n C7N O7N NAI doub 335 n n C7N N7N NAI sing 336 n n N7N H71N NAI sing 337 n n N7N H72N NAI sing 338 n n C4N C5N NAI sing 339 n n C4N H4N NAI sing 340 n n C4N H42N NAI sing 341 n n C5N C6N NAI doub 342 n n C5N H5N NAI sing 343 n n C6N H6N NAI sing 344 n n # _atom_sites.entry_id 4R69 _atom_sites.fract_transf_matrix[1][1] 0.013332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001517 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EPE A 1 401 802 EPE EPE . F 3 NAI A 1 402 801 NAI NAI . G 4 W13 A 1 403 1 W13 DRG . H 2 EPE B 1 401 802 EPE EPE . I 3 NAI B 1 402 801 NAI NAI . J 4 W13 B 1 403 1 W13 DRG . K 2 EPE C 1 401 802 EPE EPE . L 3 NAI C 1 402 801 NAI NAI . M 4 W13 C 1 403 1 W13 DRG . N 3 NAI D 1 801 801 NAI NAI . O 5 SO4 D 1 802 1 SO4 SO4 . P 4 W13 D 1 803 1 W13 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . F 3 41.299 10.181 15.906 1 44.58 ? PA NAI 402 A 1 HETATM 2 O O1A NAI . . . F 3 42.715 10.422 15.544 1 44.65 ? O1A NAI 402 A 1 HETATM 3 O O2A NAI . . . F 3 41.049 8.725 16.328 1 43.58 ? O2A NAI 402 A 1 HETATM 4 O O5B NAI . . . F 3 40.128 10.408 14.873 1 44.53 ? O5B NAI 402 A 1 HETATM 5 C C5B NAI . . . F 3 39.802 11.565 14.073 1 43.45 ? C5B NAI 402 A 1 HETATM 6 C C4B NAI . . . F 3 39.237 11.09 12.756 1 42.89 ? C4B NAI 402 A 1 HETATM 7 O O4B NAI . . . F 3 38.798 12.222 11.967 1 42.87 ? O4B NAI 402 A 1 HETATM 8 C C3B NAI . . . F 3 40.191 10.281 11.871 1 42.25 ? C3B NAI 402 A 1 HETATM 9 O O3B NAI . . . F 3 39.586 9.056 11.469 1 41.24 ? O3B NAI 402 A 1 HETATM 10 C C2B NAI . . . F 3 40.473 11.232 10.703 1 43.4 ? C2B NAI 402 A 1 HETATM 11 O O2B NAI . . . F 3 40.743 10.57 9.476 1 44.49 ? O2B NAI 402 A 1 HETATM 12 C C1B NAI . . . F 3 39.153 11.98 10.625 1 42.73 ? C1B NAI 402 A 1 HETATM 13 N N9A NAI . . . F 3 39.176 13.243 9.891 1 41.73 ? N9A NAI 402 A 1 HETATM 14 C C8A NAI . . . F 3 40.215 14.13 9.778 1 41.19 ? C8A NAI 402 A 1 HETATM 15 N N7A NAI . . . F 3 39.977 15.132 8.967 1 41.63 ? N7A NAI 402 A 1 HETATM 16 C C5A NAI . . . F 3 38.686 14.894 8.52 1 42.13 ? C5A NAI 402 A 1 HETATM 17 C C6A NAI . . . F 3 37.848 15.588 7.622 1 41.16 ? C6A NAI 402 A 1 HETATM 18 N N6A NAI . . . F 3 38.227 16.669 6.939 1 39.86 ? N6A NAI 402 A 1 HETATM 19 N N1A NAI . . . F 3 36.609 15.087 7.403 1 41.83 ? N1A NAI 402 A 1 HETATM 20 C C2A NAI . . . F 3 36.246 13.963 8.033 1 41.63 ? C2A NAI 402 A 1 HETATM 21 N N3A NAI . . . F 3 36.955 13.214 8.885 1 41.7 ? N3A NAI 402 A 1 HETATM 22 C C4A NAI . . . F 3 38.176 13.738 9.088 1 42.24 ? C4A NAI 402 A 1 HETATM 23 O O3 NAI . . . F 3 40.817 11.142 17.099 1 43.87 ? O3 NAI 402 A 1 HETATM 24 P PN NAI . . . F 3 39.778 10.713 18.254 1 42.32 ? PN NAI 402 A 1 HETATM 25 O O1N NAI . . . F 3 40.382 9.96 19.379 1 41.18 ? O1N NAI 402 A 1 HETATM 26 O O2N NAI . . . F 3 38.61 10.106 17.442 1 43.51 ? O2N NAI 402 A 1 HETATM 27 O O5D NAI . . . F 3 39.254 12.161 18.716 1 39.61 ? O5D NAI 402 A 1 HETATM 28 C C5D NAI . . . F 3 38.475 13.07 17.906 1 37.19 ? C5D NAI 402 A 1 HETATM 29 C C4D NAI . . . F 3 38.311 14.39 18.619 1 35.65 ? C4D NAI 402 A 1 HETATM 30 O O4D NAI . . . F 3 37.472 14.221 19.787 1 35.64 ? O4D NAI 402 A 1 HETATM 31 C C3D NAI . . . F 3 39.6 15.067 19.098 1 34.35 ? C3D NAI 402 A 1 HETATM 32 O O3D NAI . . . F 3 39.639 16.437 18.715 1 33.3 ? O3D NAI 402 A 1 HETATM 33 C C2D NAI . . . F 3 39.558 14.855 20.614 1 34.9 ? C2D NAI 402 A 1 HETATM 34 O O2D NAI . . . F 3 40.286 15.818 21.364 1 35.48 ? O2D NAI 402 A 1 HETATM 35 C C1D NAI . . . F 3 38.056 14.918 20.866 1 34.28 ? C1D NAI 402 A 1 HETATM 36 N N1N NAI . . . F 3 37.499 14.599 22.202 1 31.72 ? N1N NAI 402 A 1 HETATM 37 C C2N NAI . . . F 3 36.511 15.384 22.829 1 31.27 ? C2N NAI 402 A 1 HETATM 38 C C3N NAI . . . F 3 36.028 15.078 24.05 1 30.12 ? C3N NAI 402 A 1 HETATM 39 C C7N NAI . . . F 3 34.975 15.955 24.721 1 29.93 ? C7N NAI 402 A 1 HETATM 40 O O7N NAI . . . F 3 34.538 16.949 24.108 1 30.48 ? O7N NAI 402 A 1 HETATM 41 N N7N NAI . . . F 3 34.549 15.641 25.939 1 28.3 ? N7N NAI 402 A 1 HETATM 42 C C4N NAI . . . F 3 36.513 13.861 24.817 1 29.02 ? C4N NAI 402 A 1 HETATM 43 C C5N NAI . . . F 3 37.535 13.069 24.061 1 29.35 ? C5N NAI 402 A 1 HETATM 44 C C6N NAI . . . F 3 37.981 13.415 22.87 1 30.17 ? C6N NAI 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #