data_4R69
#
_model_server_result.job_id            5mmYcTgrty1XsnGfvKdhwA 
_model_server_result.datetime_utc      '2024-11-08 09:03:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":801}' 
#
_entry.id    4R69 
#
_exptl.entry_id    4R69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.49 
_cell.angle_gamma         90 
_cell.entry_id            4R69 
_cell.length_a            75.007 
_cell.length_b            80.682 
_cell.length_c            101.983 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 N N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 268 n n 
PA O2A NAI sing 269 n n 
PA O5B NAI sing 270 n n 
PA O3 NAI sing 271 n n 
O2A HOA2 NAI sing 272 n n 
O5B C5B NAI sing 273 n n 
C5B C4B NAI sing 274 n n 
C5B H51A NAI sing 275 n n 
C5B H52A NAI sing 276 n n 
C4B O4B NAI sing 277 n n 
C4B C3B NAI sing 278 n n 
C4B H4B NAI sing 279 n n 
O4B C1B NAI sing 280 n n 
C3B O3B NAI sing 281 n n 
C3B C2B NAI sing 282 n n 
C3B H3B NAI sing 283 n n 
O3B HO3A NAI sing 284 n n 
C2B O2B NAI sing 285 n n 
C2B C1B NAI sing 286 n n 
C2B H2B NAI sing 287 n n 
O2B HO2A NAI sing 288 n n 
C1B N9A NAI sing 289 n n 
C1B H1B NAI sing 290 n n 
N9A C8A NAI sing 291 n y 
N9A C4A NAI sing 292 n y 
C8A N7A NAI doub 293 n y 
C8A H8A NAI sing 294 n n 
N7A C5A NAI sing 295 n y 
C5A C6A NAI sing 296 n y 
C5A C4A NAI doub 297 n y 
C6A N6A NAI sing 298 n n 
C6A N1A NAI doub 299 n y 
N6A H61A NAI sing 300 n n 
N6A H62A NAI sing 301 n n 
N1A C2A NAI sing 302 n y 
C2A N3A NAI doub 303 n y 
C2A H2A NAI sing 304 n n 
N3A C4A NAI sing 305 n y 
O3 PN NAI sing 306 n n 
PN O1N NAI sing 307 n n 
PN O2N NAI doub 308 n n 
PN O5D NAI sing 309 n n 
O1N HO1N NAI sing 310 n n 
O5D C5D NAI sing 311 n n 
C5D C4D NAI sing 312 n n 
C5D H51N NAI sing 313 n n 
C5D H52N NAI sing 314 n n 
C4D O4D NAI sing 315 n n 
C4D C3D NAI sing 316 n n 
C4D H4D NAI sing 317 n n 
O4D C1D NAI sing 318 n n 
C3D O3D NAI sing 319 n n 
C3D C2D NAI sing 320 n n 
C3D H3D NAI sing 321 n n 
O3D HO3N NAI sing 322 n n 
C2D O2D NAI sing 323 n n 
C2D C1D NAI sing 324 n n 
C2D H2D NAI sing 325 n n 
O2D HO2N NAI sing 326 n n 
C1D N1N NAI sing 327 n n 
C1D H1D NAI sing 328 n n 
N1N C2N NAI sing 329 n n 
N1N C6N NAI sing 330 n n 
C2N C3N NAI doub 331 n n 
C2N H2N NAI sing 332 n n 
C3N C7N NAI sing 333 n n 
C3N C4N NAI sing 334 n n 
C7N O7N NAI doub 335 n n 
C7N N7N NAI sing 336 n n 
N7N H71N NAI sing 337 n n 
N7N H72N NAI sing 338 n n 
C4N C5N NAI sing 339 n n 
C4N H4N NAI sing 340 n n 
C4N H42N NAI sing 341 n n 
C5N C6N NAI doub 342 n n 
C5N H5N NAI sing 343 n n 
C6N H6N NAI sing 344 n n 
#
_atom_sites.entry_id                     4R69 
_atom_sites.fract_transf_matrix[1][1]    0.013332 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001517 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EPE A 1 401 802 EPE EPE . 
F 3 NAI A 1 402 801 NAI NAI . 
G 4 W13 A 1 403 1 W13 DRG . 
H 2 EPE B 1 401 802 EPE EPE . 
I 3 NAI B 1 402 801 NAI NAI . 
J 4 W13 B 1 403 1 W13 DRG . 
K 2 EPE C 1 401 802 EPE EPE . 
L 3 NAI C 1 402 801 NAI NAI . 
M 4 W13 C 1 403 1 W13 DRG . 
N 3 NAI D 1 801 801 NAI NAI . 
O 5 SO4 D 1 802 1 SO4 SO4 . 
P 4 W13 D 1 803 1 W13 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . N 3 -13.52 -2.782 24.966 1 42.31 ? PA NAI 801 D 1 
HETATM 2 O O1A NAI . . . N 3 -14.959 -2.981 25.266 1 42.55 ? O1A NAI 801 D 1 
HETATM 3 O O2A NAI . . . N 3 -12.638 -2.928 26.223 1 42.79 ? O2A NAI 801 D 1 
HETATM 4 O O5B NAI . . . N 3 -12.979 -1.424 24.369 1 42.45 ? O5B NAI 801 D 1 
HETATM 5 C C5B NAI . . . N 3 -13.426 -0.683 23.217 1 41.54 ? C5B NAI 801 D 1 
HETATM 6 C C4B NAI . . . N 3 -13.289 0.793 23.499 1 40.08 ? C4B NAI 801 D 1 
HETATM 7 O O4B NAI . . . N 3 -13.633 1.555 22.318 1 38.95 ? O4B NAI 801 D 1 
HETATM 8 C C3B NAI . . . N 3 -14.149 1.347 24.64 1 40.19 ? C3B NAI 801 D 1 
HETATM 9 O O3B NAI . . . N 3 -13.342 2.066 25.571 1 41.26 ? O3B NAI 801 D 1 
HETATM 10 C C2B NAI . . . N 3 -15.184 2.216 23.911 1 39.18 ? C2B NAI 801 D 1 
HETATM 11 O O2B NAI . . . N 3 -15.638 3.337 24.66 1 40.29 ? O2B NAI 801 D 1 
HETATM 12 C C1B NAI . . . N 3 -14.361 2.689 22.729 1 38.79 ? C1B NAI 801 D 1 
HETATM 13 N N9A NAI . . . N 3 -15.114 3.23 21.599 1 39.23 ? N9A NAI 801 D 1 
HETATM 14 C C8A NAI . . . N 3 -16.372 2.88 21.178 1 38.93 ? C8A NAI 801 D 1 
HETATM 15 N N7A NAI . . . N 3 -16.826 3.609 20.188 1 37.95 ? N7A NAI 801 D 1 
HETATM 16 C C5A NAI . . . N 3 -15.792 4.497 19.931 1 38.39 ? C5A NAI 801 D 1 
HETATM 17 C C6A NAI . . . N 3 -15.645 5.543 18.996 1 39.92 ? C6A NAI 801 D 1 
HETATM 18 N N6A NAI . . . N 3 -16.603 5.923 18.15 1 41.14 ? N6A NAI 801 D 1 
HETATM 19 N N1A NAI . . . N 3 -14.481 6.232 19 1 40.39 ? N1A NAI 801 D 1 
HETATM 20 C C2A NAI . . . N 3 -13.535 5.897 19.884 1 39.69 ? C2A NAI 801 D 1 
HETATM 21 N N3A NAI . . . N 3 -13.563 4.94 20.816 1 39.11 ? N3A NAI 801 D 1 
HETATM 22 C C4A NAI . . . N 3 -14.728 4.27 20.788 1 38.98 ? C4A NAI 801 D 1 
HETATM 23 O O3 NAI . . . N 3 -12.988 -3.807 23.87 1 40 ? O3 NAI 801 D 1 
HETATM 24 P PN NAI . . . N 3 -11.512 -4.46 23.863 1 37.18 ? PN NAI 801 D 1 
HETATM 25 O O1N NAI . . . N 3 -11.336 -5.64 24.756 1 35.06 ? O1N NAI 801 D 1 
HETATM 26 O O2N NAI . . . N 3 -10.604 -3.215 24.009 1 37.68 ? O2N NAI 801 D 1 
HETATM 27 O O5D NAI . . . N 3 -11.399 -4.859 22.314 1 34.1 ? O5D NAI 801 D 1 
HETATM 28 C C5D NAI . . . N 3 -11.353 -3.934 21.206 1 32.38 ? C5D NAI 801 D 1 
HETATM 29 C C4D NAI . . . N 3 -11.421 -4.679 19.895 1 30.72 ? C4D NAI 801 D 1 
HETATM 30 O O4D NAI . . . N 3 -10.216 -5.455 19.709 1 29.44 ? O4D NAI 801 D 1 
HETATM 31 C C3D NAI . . . N 3 -12.596 -5.647 19.72 1 31.19 ? C3D NAI 801 D 1 
HETATM 32 O O3D NAI . . . N 3 -13.249 -5.434 18.47 1 28.57 ? O3D NAI 801 D 1 
HETATM 33 C C2D NAI . . . N 3 -11.934 -7.024 19.874 1 32.04 ? C2D NAI 801 D 1 
HETATM 34 O O2D NAI . . . N 3 -12.619 -8.101 19.244 1 32.35 ? O2D NAI 801 D 1 
HETATM 35 C C1D NAI . . . N 3 -10.571 -6.745 19.257 1 30.63 ? C1D NAI 801 D 1 
HETATM 36 N N1N NAI . . . N 3 -9.489 -7.75 19.309 1 30.34 ? N1N NAI 801 D 1 
HETATM 37 C C2N NAI . . . N 3 -8.694 -8.073 18.185 1 30.74 ? C2N NAI 801 D 1 
HETATM 38 C C3N NAI . . . N 3 -7.708 -8.988 18.255 1 31.12 ? C3N NAI 801 D 1 
HETATM 39 C C7N NAI . . . N 3 -6.871 -9.335 17.031 1 31.46 ? C7N NAI 801 D 1 
HETATM 40 O O7N NAI . . . N 3 -7.099 -8.728 15.969 1 33.11 ? O7N NAI 801 D 1 
HETATM 41 N N7N NAI . . . N 3 -5.925 -10.265 17.117 1 29.92 ? N7N NAI 801 D 1 
HETATM 42 C C4N NAI . . . N 3 -7.387 -9.717 19.555 1 31.49 ? C4N NAI 801 D 1 
HETATM 43 C C5N NAI . . . N 3 -8.273 -9.299 20.695 1 31.07 ? C5N NAI 801 D 1 
HETATM 44 C C6N NAI . . . N 3 -9.228 -8.4 20.572 1 29.97 ? C6N NAI 801 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#