data_4R6E
#
_model_server_result.job_id            t9is0DzdrCInFqELVsNFsQ 
_model_server_result.datetime_utc      '2024-10-18 16:22:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1101}' 
#
_entry.id    4R6E 
#
_exptl.entry_id    4R6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.388 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4R6E 
_cell.length_a            104.4 
_cell.length_b            108.63 
_cell.length_c            142.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,P 1 1 
B,H,I,J,Q 2 1 
C,K,L,M,R 3 1 
D,N,O,S 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 185 A CYS 845 1_555 D SG CYS 185 D CYS 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf2 B SG CYS 185 B CYS 845 1_555 C SG CYS 185 C CYS 845 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
#
_chem_comp.formula           'C19 H20 N4 O' 
_chem_comp.formula_weight    320.388 
_chem_comp.id                3JD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Niraparib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CAI 3JD doub 1 n y 
CAC CAD 3JD sing 2 n y 
CAI CAU 3JD sing 3 n y 
CAD CAT 3JD doub 4 n y 
CAU CAJ 3JD doub 5 n y 
CAU CAV 3JD sing 6 n y 
CAJ NAX 3JD sing 7 n y 
CAT CAV 3JD sing 8 n y 
CAT CAQ 3JD sing 9 n n 
CAV NAO 3JD doub 10 n y 
OAB CAQ 3JD doub 11 n n 
NAX NAO 3JD sing 12 n y 
NAX CAS 3JD sing 13 n n 
CAQ NAA 3JD sing 14 n n 
CAH CAS 3JD doub 15 n y 
CAH CAF 3JD sing 16 n y 
CAS CAG 3JD sing 17 n y 
CAF CAR 3JD doub 18 n y 
CAG CAE 3JD doub 19 n y 
CAR CAE 3JD sing 20 n y 
CAR CAW 3JD sing 21 n n 
CAW CAM 3JD sing 22 n n 
CAW CAN 3JD sing 23 n n 
CAM CAK 3JD sing 24 n n 
CAN NAP 3JD sing 25 n n 
NAP CAL 3JD sing 26 n n 
CAK CAL 3JD sing 27 n n 
CAM H1 3JD sing 28 n n 
CAM H2 3JD sing 29 n n 
CAK H3 3JD sing 30 n n 
CAK H4 3JD sing 31 n n 
CAL H5 3JD sing 32 n n 
CAL H6 3JD sing 33 n n 
NAP H7 3JD sing 34 n n 
CAN H9 3JD sing 35 n n 
CAN H10 3JD sing 36 n n 
CAW H11 3JD sing 37 n n 
CAF H12 3JD sing 38 n n 
CAH H13 3JD sing 39 n n 
CAE H14 3JD sing 40 n n 
CAG H15 3JD sing 41 n n 
CAJ H16 3JD sing 42 n n 
CAI H17 3JD sing 43 n n 
CAC H18 3JD sing 44 n n 
CAD H19 3JD sing 45 n n 
NAA H20 3JD sing 46 n n 
NAA H21 3JD sing 47 n n 
#
_atom_sites.entry_id                     4R6E 
_atom_sites.fract_transf_matrix[1][1]    0.009579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3JD A 1 1101 1 3JD DRG . 
F 3 SO4 A 1 1102 1 SO4 SO4 . 
G 4 GOL A 1 1103 1 GOL GOL . 
H 2 3JD B 1 1101 2 3JD DRG . 
I 3 SO4 B 1 1102 2 SO4 SO4 . 
J 4 GOL B 1 1103 2 GOL GOL . 
K 2 3JD C 1 1101 3 3JD DRG . 
L 3 SO4 C 1 1102 3 SO4 SO4 . 
M 4 GOL C 1 1103 3 GOL GOL . 
N 2 3JD D 1 1101 4 3JD DRG . 
O 3 SO4 D 1 1102 4 SO4 SO4 . 
P 5 HOH A 1 1201 3 HOH HOH . 
P 5 HOH A 2 1202 5 HOH HOH . 
P 5 HOH A 3 1203 10 HOH HOH . 
P 5 HOH A 4 1204 12 HOH HOH . 
P 5 HOH A 5 1205 17 HOH HOH . 
P 5 HOH A 6 1206 18 HOH HOH . 
P 5 HOH A 7 1207 22 HOH HOH . 
P 5 HOH A 8 1208 24 HOH HOH . 
P 5 HOH A 9 1209 26 HOH HOH . 
P 5 HOH A 10 1210 27 HOH HOH . 
P 5 HOH A 11 1211 30 HOH HOH . 
P 5 HOH A 12 1212 37 HOH HOH . 
P 5 HOH A 13 1213 41 HOH HOH . 
P 5 HOH A 14 1214 44 HOH HOH . 
P 5 HOH A 15 1215 45 HOH HOH . 
P 5 HOH A 16 1216 46 HOH HOH . 
P 5 HOH A 17 1217 48 HOH HOH . 
P 5 HOH A 18 1218 49 HOH HOH . 
P 5 HOH A 19 1219 52 HOH HOH . 
P 5 HOH A 20 1220 53 HOH HOH . 
P 5 HOH A 21 1221 54 HOH HOH . 
P 5 HOH A 22 1222 58 HOH HOH . 
P 5 HOH A 23 1223 60 HOH HOH . 
P 5 HOH A 24 1224 71 HOH HOH . 
P 5 HOH A 25 1225 72 HOH HOH . 
P 5 HOH A 26 1226 73 HOH HOH . 
P 5 HOH A 27 1227 78 HOH HOH . 
P 5 HOH A 28 1228 79 HOH HOH . 
P 5 HOH A 29 1229 82 HOH HOH . 
P 5 HOH A 30 1230 100 HOH HOH . 
P 5 HOH A 31 1231 111 HOH HOH . 
P 5 HOH A 32 1232 112 HOH HOH . 
P 5 HOH A 33 1233 114 HOH HOH . 
P 5 HOH A 34 1234 120 HOH HOH . 
P 5 HOH A 35 1235 122 HOH HOH . 
P 5 HOH A 36 1236 124 HOH HOH . 
P 5 HOH A 37 1237 125 HOH HOH . 
P 5 HOH A 38 1238 126 HOH HOH . 
P 5 HOH A 39 1239 131 HOH HOH . 
P 5 HOH A 40 1240 132 HOH HOH . 
P 5 HOH A 41 1241 133 HOH HOH . 
P 5 HOH A 42 1242 134 HOH HOH . 
P 5 HOH A 43 1243 135 HOH HOH . 
P 5 HOH A 44 1244 136 HOH HOH . 
P 5 HOH A 45 1245 137 HOH HOH . 
P 5 HOH A 46 1246 138 HOH HOH . 
P 5 HOH A 47 1247 140 HOH HOH . 
P 5 HOH A 48 1248 141 HOH HOH . 
P 5 HOH A 49 1249 142 HOH HOH . 
P 5 HOH A 50 1250 143 HOH HOH . 
P 5 HOH A 51 1251 144 HOH HOH . 
Q 5 HOH B 1 1201 7 HOH HOH . 
Q 5 HOH B 2 1202 8 HOH HOH . 
Q 5 HOH B 3 1203 9 HOH HOH . 
Q 5 HOH B 4 1204 13 HOH HOH . 
Q 5 HOH B 5 1205 21 HOH HOH . 
Q 5 HOH B 6 1206 23 HOH HOH . 
Q 5 HOH B 7 1207 32 HOH HOH . 
Q 5 HOH B 8 1208 38 HOH HOH . 
Q 5 HOH B 9 1209 39 HOH HOH . 
Q 5 HOH B 10 1210 40 HOH HOH . 
Q 5 HOH B 11 1211 43 HOH HOH . 
Q 5 HOH B 12 1212 50 HOH HOH . 
Q 5 HOH B 13 1213 51 HOH HOH . 
Q 5 HOH B 14 1214 61 HOH HOH . 
Q 5 HOH B 15 1215 62 HOH HOH . 
Q 5 HOH B 16 1216 63 HOH HOH . 
Q 5 HOH B 17 1217 66 HOH HOH . 
Q 5 HOH B 18 1218 67 HOH HOH . 
Q 5 HOH B 19 1219 68 HOH HOH . 
Q 5 HOH B 20 1220 69 HOH HOH . 
Q 5 HOH B 21 1221 76 HOH HOH . 
Q 5 HOH B 22 1222 81 HOH HOH . 
Q 5 HOH B 23 1223 86 HOH HOH . 
Q 5 HOH B 24 1224 90 HOH HOH . 
Q 5 HOH B 25 1225 92 HOH HOH . 
Q 5 HOH B 26 1226 97 HOH HOH . 
Q 5 HOH B 27 1227 98 HOH HOH . 
Q 5 HOH B 28 1228 107 HOH HOH . 
Q 5 HOH B 29 1229 115 HOH HOH . 
Q 5 HOH B 30 1230 116 HOH HOH . 
Q 5 HOH B 31 1231 117 HOH HOH . 
Q 5 HOH B 32 1232 118 HOH HOH . 
Q 5 HOH B 33 1233 119 HOH HOH . 
Q 5 HOH B 34 1234 145 HOH HOH . 
Q 5 HOH B 35 1235 146 HOH HOH . 
Q 5 HOH B 36 1236 147 HOH HOH . 
Q 5 HOH B 37 1237 148 HOH HOH . 
Q 5 HOH B 38 1238 149 HOH HOH . 
Q 5 HOH B 39 1239 150 HOH HOH . 
Q 5 HOH B 40 1240 151 HOH HOH . 
Q 5 HOH B 41 1241 152 HOH HOH . 
R 5 HOH C 1 1201 1 HOH HOH . 
R 5 HOH C 2 1202 4 HOH HOH . 
R 5 HOH C 3 1203 6 HOH HOH . 
R 5 HOH C 4 1204 11 HOH HOH . 
R 5 HOH C 5 1205 14 HOH HOH . 
R 5 HOH C 6 1206 15 HOH HOH . 
R 5 HOH C 7 1207 16 HOH HOH . 
R 5 HOH C 8 1208 19 HOH HOH . 
R 5 HOH C 9 1209 20 HOH HOH . 
R 5 HOH C 10 1210 25 HOH HOH . 
R 5 HOH C 11 1211 28 HOH HOH . 
R 5 HOH C 12 1212 29 HOH HOH . 
R 5 HOH C 13 1213 31 HOH HOH . 
R 5 HOH C 14 1214 33 HOH HOH . 
R 5 HOH C 15 1215 34 HOH HOH . 
R 5 HOH C 16 1216 36 HOH HOH . 
R 5 HOH C 17 1217 42 HOH HOH . 
R 5 HOH C 18 1218 47 HOH HOH . 
R 5 HOH C 19 1219 55 HOH HOH . 
R 5 HOH C 20 1220 56 HOH HOH . 
R 5 HOH C 21 1221 57 HOH HOH . 
R 5 HOH C 22 1222 59 HOH HOH . 
R 5 HOH C 23 1223 64 HOH HOH . 
R 5 HOH C 24 1224 65 HOH HOH . 
R 5 HOH C 25 1225 70 HOH HOH . 
R 5 HOH C 26 1226 74 HOH HOH . 
R 5 HOH C 27 1227 75 HOH HOH . 
R 5 HOH C 28 1228 77 HOH HOH . 
R 5 HOH C 29 1229 80 HOH HOH . 
R 5 HOH C 30 1230 83 HOH HOH . 
R 5 HOH C 31 1231 84 HOH HOH . 
R 5 HOH C 32 1232 85 HOH HOH . 
R 5 HOH C 33 1233 87 HOH HOH . 
R 5 HOH C 34 1234 88 HOH HOH . 
R 5 HOH C 35 1235 89 HOH HOH . 
R 5 HOH C 36 1236 91 HOH HOH . 
R 5 HOH C 37 1237 93 HOH HOH . 
R 5 HOH C 38 1238 94 HOH HOH . 
R 5 HOH C 39 1239 95 HOH HOH . 
R 5 HOH C 40 1240 96 HOH HOH . 
R 5 HOH C 41 1241 99 HOH HOH . 
R 5 HOH C 42 1242 101 HOH HOH . 
R 5 HOH C 43 1243 102 HOH HOH . 
R 5 HOH C 44 1244 103 HOH HOH . 
R 5 HOH C 45 1245 104 HOH HOH . 
R 5 HOH C 46 1246 105 HOH HOH . 
R 5 HOH C 47 1247 106 HOH HOH . 
R 5 HOH C 48 1248 108 HOH HOH . 
R 5 HOH C 49 1249 109 HOH HOH . 
R 5 HOH C 50 1250 110 HOH HOH . 
R 5 HOH C 51 1251 113 HOH HOH . 
R 5 HOH C 52 1252 121 HOH HOH . 
R 5 HOH C 53 1253 153 HOH HOH . 
R 5 HOH C 54 1254 154 HOH HOH . 
S 5 HOH D 1 1201 2 HOH HOH . 
S 5 HOH D 2 1202 35 HOH HOH . 
S 5 HOH D 3 1203 123 HOH HOH . 
S 5 HOH D 4 1204 127 HOH HOH . 
S 5 HOH D 5 1205 128 HOH HOH . 
S 5 HOH D 6 1206 129 HOH HOH . 
S 5 HOH D 7 1207 130 HOH HOH . 
S 5 HOH D 8 1208 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAM 3JD . . . E 2 -65.336 25.275 29.66 1 39.71 ? CAM 3JD 1101 A 1 
HETATM 2 C CAK 3JD . . . E 2 -65.225 25.639 31.189 1 41.49 ? CAK 3JD 1101 A 1 
HETATM 3 C CAL 3JD . . . E 2 -65.709 27.059 31.517 1 39.68 ? CAL 3JD 1101 A 1 
HETATM 4 N NAP 3JD . . . E 2 -67.098 27.28 31.094 1 40.94 ? NAP 3JD 1101 A 1 
HETATM 5 C CAN 3JD . . . E 2 -67.669 26.369 30.011 1 38.5 ? CAN 3JD 1101 A 1 
HETATM 6 C CAW 3JD . . . E 2 -66.649 25.819 28.981 1 37.83 ? CAW 3JD 1101 A 1 
HETATM 7 C CAR 3JD . . . E 2 -67.301 24.867 28.057 1 35.19 ? CAR 3JD 1101 A 1 
HETATM 8 C CAF 3JD . . . E 2 -67.233 25.056 26.663 1 30.99 ? CAF 3JD 1101 A 1 
HETATM 9 C CAH 3JD . . . E 2 -67.791 24.095 25.804 1 29.28 ? CAH 3JD 1101 A 1 
HETATM 10 C CAE 3JD . . . E 2 -68.024 23.727 28.561 1 32.17 ? CAE 3JD 1101 A 1 
HETATM 11 C CAG 3JD . . . E 2 -68.652 22.79 27.649 1 33.17 ? CAG 3JD 1101 A 1 
HETATM 12 C CAS 3JD . . . E 2 -68.612 23.052 26.212 1 29.96 ? CAS 3JD 1101 A 1 
HETATM 13 N NAX 3JD . . . E 2 -69.187 22.194 25.304 1 29.95 ? NAX 3JD 1101 A 1 
HETATM 14 C CAJ 3JD . . . E 2 -68.72 21.955 24.062 1 25.9 ? CAJ 3JD 1101 A 1 
HETATM 15 N NAO 3JD . . . E 2 -70.118 21.366 25.56 1 30.05 ? NAO 3JD 1101 A 1 
HETATM 16 C CAV 3JD . . . E 2 -70.468 20.646 24.516 1 29.98 ? CAV 3JD 1101 A 1 
HETATM 17 C CAU 3JD . . . E 2 -69.538 21.003 23.499 1 28.49 ? CAU 3JD 1101 A 1 
HETATM 18 C CAI 3JD . . . E 2 -69.576 20.419 22.22 1 23.22 ? CAI 3JD 1101 A 1 
HETATM 19 C CAC 3JD . . . E 2 -70.622 19.469 21.974 1 26.76 ? CAC 3JD 1101 A 1 
HETATM 20 C CAD 3JD . . . E 2 -71.558 19.101 23.024 1 29.14 ? CAD 3JD 1101 A 1 
HETATM 21 C CAT 3JD . . . E 2 -71.487 19.697 24.341 1 29.91 ? CAT 3JD 1101 A 1 
HETATM 22 C CAQ 3JD . . . E 2 -72.426 19.345 25.372 1 29.93 ? CAQ 3JD 1101 A 1 
HETATM 23 O OAB 3JD . . . E 2 -73.282 18.501 25.186 1 31.26 ? OAB 3JD 1101 A 1 
HETATM 24 N NAA 3JD . . . E 2 -72.425 19.933 26.575 1 26.65 ? NAA 3JD 1101 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#