data_4R6K # _model_server_result.job_id DoassPHTsEIrqPzZSI8wWQ _model_server_result.datetime_utc '2024-12-06 21:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4R6K # _exptl.entry_id 4R6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R6K _cell.length_a 44.932 _cell.length_b 75.727 _cell.length_c 119.738 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 356 A LYS 335 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A O LEU 359 A LEU 338 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc3 A OG1 THR 364 A THR 343 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc4 B NA NA . A NA 501 1_555 C O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 B NA NA . A NA 501 1_555 C O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 B NA NA . A NA 501 1_555 C O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R6K _atom_sites.fract_transf_matrix[1][1] 0.022256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 HOH A 1 601 2 HOH HOH . C 3 HOH A 2 602 4 HOH HOH . C 3 HOH A 3 603 5 HOH HOH . C 3 HOH A 4 604 7 HOH HOH . C 3 HOH A 5 605 8 HOH HOH . C 3 HOH A 6 606 9 HOH HOH . C 3 HOH A 7 607 10 HOH HOH . C 3 HOH A 8 608 11 HOH HOH . C 3 HOH A 9 609 12 HOH HOH . C 3 HOH A 10 610 13 HOH HOH . C 3 HOH A 11 611 14 HOH HOH . C 3 HOH A 12 612 15 HOH HOH . C 3 HOH A 13 613 16 HOH HOH . C 3 HOH A 14 614 17 HOH HOH . C 3 HOH A 15 615 18 HOH HOH . C 3 HOH A 16 616 19 HOH HOH . C 3 HOH A 17 617 20 HOH HOH . C 3 HOH A 18 618 21 HOH HOH . C 3 HOH A 19 619 22 HOH HOH . C 3 HOH A 20 620 23 HOH HOH . C 3 HOH A 21 621 24 HOH HOH . C 3 HOH A 22 622 25 HOH HOH . C 3 HOH A 23 623 26 HOH HOH . C 3 HOH A 24 624 27 HOH HOH . C 3 HOH A 25 625 28 HOH HOH . C 3 HOH A 26 626 29 HOH HOH . C 3 HOH A 27 627 31 HOH HOH . C 3 HOH A 28 628 32 HOH HOH . C 3 HOH A 29 629 33 HOH HOH . C 3 HOH A 30 630 34 HOH HOH . C 3 HOH A 31 631 35 HOH HOH . C 3 HOH A 32 632 36 HOH HOH . C 3 HOH A 33 633 37 HOH HOH . C 3 HOH A 34 634 38 HOH HOH . C 3 HOH A 35 635 39 HOH HOH . C 3 HOH A 36 636 40 HOH HOH . C 3 HOH A 37 637 41 HOH HOH . C 3 HOH A 38 638 42 HOH HOH . C 3 HOH A 39 639 44 HOH HOH . C 3 HOH A 40 640 45 HOH HOH . C 3 HOH A 41 641 46 HOH HOH . C 3 HOH A 42 642 48 HOH HOH . C 3 HOH A 43 643 49 HOH HOH . C 3 HOH A 44 644 50 HOH HOH . C 3 HOH A 45 645 52 HOH HOH . C 3 HOH A 46 646 53 HOH HOH . C 3 HOH A 47 647 54 HOH HOH . C 3 HOH A 48 648 55 HOH HOH . C 3 HOH A 49 649 59 HOH HOH . C 3 HOH A 50 650 60 HOH HOH . C 3 HOH A 51 651 61 HOH HOH . C 3 HOH A 52 652 62 HOH HOH . C 3 HOH A 53 653 64 HOH HOH . C 3 HOH A 54 654 65 HOH HOH . C 3 HOH A 55 655 66 HOH HOH . C 3 HOH A 56 656 67 HOH HOH . C 3 HOH A 57 657 68 HOH HOH . C 3 HOH A 58 658 69 HOH HOH . C 3 HOH A 59 659 70 HOH HOH . C 3 HOH A 60 660 71 HOH HOH . C 3 HOH A 61 661 72 HOH HOH . C 3 HOH A 62 662 73 HOH HOH . C 3 HOH A 63 663 74 HOH HOH . C 3 HOH A 64 664 75 HOH HOH . C 3 HOH A 65 665 76 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 78 HOH HOH . C 3 HOH A 68 668 79 HOH HOH . C 3 HOH A 69 669 80 HOH HOH . C 3 HOH A 70 670 81 HOH HOH . C 3 HOH A 71 671 82 HOH HOH . C 3 HOH A 72 672 83 HOH HOH . C 3 HOH A 73 673 84 HOH HOH . C 3 HOH A 74 674 85 HOH HOH . C 3 HOH A 75 675 86 HOH HOH . C 3 HOH A 76 676 87 HOH HOH . C 3 HOH A 77 677 88 HOH HOH . C 3 HOH A 78 678 89 HOH HOH . C 3 HOH A 79 679 90 HOH HOH . C 3 HOH A 80 680 92 HOH HOH . C 3 HOH A 81 681 93 HOH HOH . C 3 HOH A 82 682 98 HOH HOH . C 3 HOH A 83 683 99 HOH HOH . C 3 HOH A 84 684 100 HOH HOH . C 3 HOH A 85 685 101 HOH HOH . C 3 HOH A 86 686 102 HOH HOH . C 3 HOH A 87 687 103 HOH HOH . C 3 HOH A 88 688 104 HOH HOH . C 3 HOH A 89 689 106 HOH HOH . C 3 HOH A 90 690 107 HOH HOH . C 3 HOH A 91 691 108 HOH HOH . C 3 HOH A 92 692 110 HOH HOH . C 3 HOH A 93 693 111 HOH HOH . C 3 HOH A 94 694 113 HOH HOH . C 3 HOH A 95 695 114 HOH HOH . C 3 HOH A 96 696 115 HOH HOH . C 3 HOH A 97 697 116 HOH HOH . C 3 HOH A 98 698 117 HOH HOH . C 3 HOH A 99 699 118 HOH HOH . C 3 HOH A 100 700 119 HOH HOH . C 3 HOH A 101 701 120 HOH HOH . C 3 HOH A 102 702 121 HOH HOH . C 3 HOH A 103 703 122 HOH HOH . C 3 HOH A 104 704 123 HOH HOH . C 3 HOH A 105 705 124 HOH HOH . C 3 HOH A 106 706 125 HOH HOH . C 3 HOH A 107 707 126 HOH HOH . C 3 HOH A 108 708 127 HOH HOH . C 3 HOH A 109 709 128 HOH HOH . C 3 HOH A 110 710 129 HOH HOH . C 3 HOH A 111 711 130 HOH HOH . C 3 HOH A 112 712 131 HOH HOH . C 3 HOH A 113 713 133 HOH HOH . C 3 HOH A 114 714 134 HOH HOH . C 3 HOH A 115 715 135 HOH HOH . C 3 HOH A 116 716 136 HOH HOH . C 3 HOH A 117 717 139 HOH HOH . C 3 HOH A 118 718 140 HOH HOH . C 3 HOH A 119 719 142 HOH HOH . C 3 HOH A 120 720 143 HOH HOH . C 3 HOH A 121 721 144 HOH HOH . C 3 HOH A 122 722 145 HOH HOH . C 3 HOH A 123 723 146 HOH HOH . C 3 HOH A 124 724 147 HOH HOH . C 3 HOH A 125 725 148 HOH HOH . C 3 HOH A 126 726 149 HOH HOH . C 3 HOH A 127 727 151 HOH HOH . C 3 HOH A 128 728 154 HOH HOH . C 3 HOH A 129 729 155 HOH HOH . C 3 HOH A 130 730 157 HOH HOH . C 3 HOH A 131 731 159 HOH HOH . C 3 HOH A 132 732 161 HOH HOH . C 3 HOH A 133 733 162 HOH HOH . C 3 HOH A 134 734 166 HOH HOH . C 3 HOH A 135 735 167 HOH HOH . C 3 HOH A 136 736 169 HOH HOH . C 3 HOH A 137 737 170 HOH HOH . C 3 HOH A 138 738 171 HOH HOH . C 3 HOH A 139 739 172 HOH HOH . C 3 HOH A 140 740 174 HOH HOH . C 3 HOH A 141 741 175 HOH HOH . C 3 HOH A 142 742 178 HOH HOH . C 3 HOH A 143 743 179 HOH HOH . C 3 HOH A 144 744 180 HOH HOH . C 3 HOH A 145 745 181 HOH HOH . C 3 HOH A 146 746 182 HOH HOH . C 3 HOH A 147 747 183 HOH HOH . C 3 HOH A 148 748 184 HOH HOH . C 3 HOH A 149 749 185 HOH HOH . C 3 HOH A 150 750 186 HOH HOH . C 3 HOH A 151 751 187 HOH HOH . C 3 HOH A 152 752 188 HOH HOH . C 3 HOH A 153 753 189 HOH HOH . C 3 HOH A 154 754 190 HOH HOH . C 3 HOH A 155 755 191 HOH HOH . C 3 HOH A 156 756 192 HOH HOH . C 3 HOH A 157 757 193 HOH HOH . C 3 HOH A 158 758 194 HOH HOH . C 3 HOH A 159 759 195 HOH HOH . C 3 HOH A 160 760 196 HOH HOH . C 3 HOH A 161 761 197 HOH HOH . C 3 HOH A 162 762 198 HOH HOH . C 3 HOH A 163 763 199 HOH HOH . C 3 HOH A 164 764 200 HOH HOH . C 3 HOH A 165 765 201 HOH HOH . C 3 HOH A 166 766 202 HOH HOH . C 3 HOH A 167 767 203 HOH HOH . C 3 HOH A 168 768 204 HOH HOH . C 3 HOH A 169 769 205 HOH HOH . C 3 HOH A 170 770 206 HOH HOH . C 3 HOH A 171 771 207 HOH HOH . C 3 HOH A 172 772 208 HOH HOH . C 3 HOH A 173 773 209 HOH HOH . C 3 HOH A 174 774 210 HOH HOH . C 3 HOH A 175 775 211 HOH HOH . C 3 HOH A 176 776 212 HOH HOH . C 3 HOH A 177 777 213 HOH HOH . C 3 HOH A 178 778 214 HOH HOH . C 3 HOH A 179 779 215 HOH HOH . C 3 HOH A 180 780 216 HOH HOH . C 3 HOH A 181 781 217 HOH HOH . C 3 HOH A 182 782 218 HOH HOH . C 3 HOH A 183 783 219 HOH HOH . C 3 HOH A 184 784 220 HOH HOH . C 3 HOH A 185 785 221 HOH HOH . C 3 HOH A 186 786 222 HOH HOH . C 3 HOH A 187 787 223 HOH HOH . C 3 HOH A 188 788 224 HOH HOH . C 3 HOH A 189 789 225 HOH HOH . C 3 HOH A 190 790 226 HOH HOH . C 3 HOH A 191 791 227 HOH HOH . C 3 HOH A 192 792 228 HOH HOH . C 3 HOH A 193 793 229 HOH HOH . C 3 HOH A 194 794 230 HOH HOH . C 3 HOH A 195 795 231 HOH HOH . C 3 HOH A 196 796 232 HOH HOH . C 3 HOH A 197 797 233 HOH HOH . C 3 HOH A 198 798 234 HOH HOH . C 3 HOH A 199 799 235 HOH HOH . C 3 HOH A 200 800 236 HOH HOH . C 3 HOH A 201 801 237 HOH HOH . C 3 HOH A 202 802 238 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.527 _atom_site.Cartn_y 40.272 _atom_site.Cartn_z 24.493 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #