data_4R6L # _model_server_result.job_id Hxt9OjzBMAuzakfAuSvqtw _model_server_result.datetime_utc '2024-11-23 12:10:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4R6L # _exptl.entry_id 4R6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R6L _cell.length_a 174.396 _cell.length_b 174.396 _cell.length_c 95.672 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 15 A CYS 15 1_555 C CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? covale ? covale2 B SG CYS 15 B CYS 15 1_555 D CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 4R6L _atom_sites.fract_transf_matrix[1][1] 0.005734 _atom_sites.fract_transf_matrix[1][2] 0.003311 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . D 2 39.706 -35.49 16.993 1 172.92 ? CHA BLA 900 B 1 HETATM 2 N NA BLA . . . D 2 41.56 -34.328 15.861 1 142.84 ? NA BLA 900 B 1 HETATM 3 C C1A BLA . . . D 2 40.68 -35.313 16.017 1 149.87 ? C1A BLA 900 B 1 HETATM 4 C C2A BLA . . . D 2 40.915 -36.257 15.015 1 142.03 ? C2A BLA 900 B 1 HETATM 5 C C3A BLA . . . D 2 41.971 -35.755 14.269 1 141.28 ? C3A BLA 900 B 1 HETATM 6 C C4A BLA . . . D 2 42.362 -34.527 14.815 1 141.81 ? C4A BLA 900 B 1 HETATM 7 C CMA BLA . . . D 2 42.546 -36.506 13.065 1 140.53 ? CMA BLA 900 B 1 HETATM 8 C CAA BLA . . . D 2 40.164 -37.564 14.788 1 146.11 ? CAA BLA 900 B 1 HETATM 9 C CBA BLA . . . D 2 38.99 -37.371 13.803 1 150.53 ? CBA BLA 900 B 1 HETATM 10 C CGA BLA . . . D 2 39.424 -36.916 12.393 1 161.88 ? CGA BLA 900 B 1 HETATM 11 O O1A BLA . . . D 2 39.505 -35.692 12.168 1 171.81 ? O1A BLA 900 B 1 HETATM 12 O O2A BLA . . . D 2 39.682 -37.812 11.563 1 161.77 ? O2A BLA 900 B 1 HETATM 13 C CHB BLA . . . D 2 43.454 -33.511 14.429 1 148.29 ? CHB BLA 900 B 1 HETATM 14 N NB BLA . . . D 2 43.252 -33.842 11.876 1 151.46 ? NB BLA 900 B 1 HETATM 15 C C1B BLA . . . D 2 43.965 -33.619 12.991 1 156.81 ? C1B BLA 900 B 1 HETATM 16 C C2B BLA . . . D 2 45.296 -33.491 12.622 1 162.01 ? C2B BLA 900 B 1 HETATM 17 C C3B BLA . . . D 2 45.379 -33.652 11.257 1 153.26 ? C3B BLA 900 B 1 HETATM 18 C C4B BLA . . . D 2 44.078 -33.878 10.825 1 151.06 ? C4B BLA 900 B 1 HETATM 19 C CMB BLA . . . D 2 46.465 -33.218 13.571 1 157.94 ? CMB BLA 900 B 1 HETATM 20 O OB BLA . . . D 2 43.718 -34.074 9.665 1 155.63 ? OB BLA 900 B 1 HETATM 21 C CAB BLA . . . D 2 46.563 -33.59 10.524 1 140.33 ? CAB BLA 900 B 1 HETATM 22 C CBB BLA . . . D 2 46.603 -33.758 9.148 1 141.56 ? CBB BLA 900 B 1 HETATM 23 N NC BLA . . . D 2 41.333 -29.972 18.055 1 155.13 ? NC BLA 900 B 1 HETATM 24 C C1C BLA . . . D 2 42.171 -28.929 18.111 1 149.77 ? C1C BLA 900 B 1 HETATM 25 C C2C BLA . . . D 2 42.368 -28.555 19.424 1 157.93 ? C2C BLA 900 B 1 HETATM 26 C C3C BLA . . . D 2 41.62 -29.416 20.207 1 184.16 ? C3C BLA 900 B 1 HETATM 27 C C4C BLA . . . D 2 40.994 -30.287 19.318 1 172.76 ? C4C BLA 900 B 1 HETATM 28 C CMC BLA . . . D 2 43.256 -27.404 19.889 1 151.25 ? CMC BLA 900 B 1 HETATM 29 O OC BLA . . . D 2 42.704 -28.371 17.157 1 150.03 ? OC BLA 900 B 1 HETATM 30 C CAC BLA . . . D 2 41.428 -29.468 21.741 1 206.83 ? CAC BLA 900 B 1 HETATM 31 C CBC BLA . . . D 2 42.708 -29.487 22.586 1 212.83 ? CBC BLA 900 B 1 HETATM 32 C CHD BLA . . . D 2 40.055 -31.352 19.899 1 172.43 ? CHD BLA 900 B 1 HETATM 33 N ND BLA . . . D 2 40.191 -33.32 18.12 1 180.45 ? ND BLA 900 B 1 HETATM 34 C C1D BLA . . . D 2 39.746 -32.69 19.217 1 173.61 ? C1D BLA 900 B 1 HETATM 35 C C2D BLA . . . D 2 38.829 -33.525 19.791 1 168.33 ? C2D BLA 900 B 1 HETATM 36 C C3D BLA . . . D 2 38.688 -34.669 19.029 1 168.21 ? C3D BLA 900 B 1 HETATM 37 C C4D BLA . . . D 2 39.551 -34.488 17.956 1 177.83 ? C4D BLA 900 B 1 HETATM 38 C CMD BLA . . . D 2 38.093 -33.184 21.085 1 169.69 ? CMD BLA 900 B 1 HETATM 39 C CAD BLA . . . D 2 37.73 -35.829 19.407 1 147.05 ? CAD BLA 900 B 1 HETATM 40 C CBD BLA . . . D 2 36.268 -35.503 19.106 1 149.89 ? CBD BLA 900 B 1 HETATM 41 C CGD BLA . . . D 2 35.345 -36.659 19.518 1 153.04 ? CGD BLA 900 B 1 HETATM 42 O O1D BLA . . . D 2 34.27 -36.346 20.073 1 170.26 ? O1D BLA 900 B 1 HETATM 43 O O2D BLA . . . D 2 35.738 -37.827 19.292 1 148.56 ? O2D BLA 900 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #