data_4R6S
#
_model_server_result.job_id            OZ3nETbRxj7UiQtehpIRFg 
_model_server_result.datetime_utc      '2024-12-01 01:40:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r6s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    4R6S 
#
_exptl.entry_id    4R6S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              547.6 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4'-[(2,3-dimethyl-5-{[(1R)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.44 
_cell.angle_gamma         90 
_cell.entry_id            4R6S 
_cell.length_a            93.241 
_cell.length_b            61.94 
_cell.length_c            119.226 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R6S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6205 30.97 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C33 H29 N3 O5' 
_chem_comp.formula_weight    547.6 
_chem_comp.id                3K2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4'-[(2,3-dimethyl-5-{[(1R)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C29 3K2 doub 1 n y 
C28 C27 3K2 sing 2 n y 
C29 C30 3K2 sing 3 n y 
C27 C26 3K2 doub 4 n y 
O41 C39 3K2 doub 5 n n 
C30 C39 3K2 sing 6 n n 
C30 C25 3K2 doub 7 n y 
C26 C25 3K2 sing 8 n y 
C39 O40 3K2 sing 9 n n 
C21 C20 3K2 doub 10 n y 
C21 C22 3K2 sing 11 n y 
C25 C22 3K2 sing 12 n n 
C20 C13 3K2 sing 13 n y 
C22 C23 3K2 doub 14 n y 
C13 C12 3K2 sing 15 n n 
C13 C24 3K2 doub 16 n y 
C23 C24 3K2 sing 17 n y 
C12 N07 3K2 sing 18 n n 
C11 C08 3K2 sing 19 n n 
N07 C08 3K2 sing 20 n y 
N07 C04 3K2 sing 21 n y 
C08 C09 3K2 doub 22 n y 
C03 C04 3K2 doub 23 n y 
C03 C02 3K2 sing 24 n y 
C04 C05 3K2 sing 25 n y 
C09 C05 3K2 sing 26 n y 
C09 C10 3K2 sing 27 n n 
C02 C01 3K2 doub 28 n y 
C05 C06 3K2 doub 29 n y 
C01 C06 3K2 sing 30 n y 
C01 C14 3K2 sing 31 n n 
O38 N36 3K2 sing 32 n n 
C14 O15 3K2 doub 33 n n 
C14 N16 3K2 sing 34 n n 
C32 C31 3K2 doub 35 n y 
C32 C33 3K2 sing 36 n y 
C31 C18 3K2 sing 37 n y 
N36 C33 3K2 sing 38 n n 
N36 O37 3K2 doub 39 n n 
N16 C17 3K2 sing 40 n n 
C33 C34 3K2 doub 41 n y 
C18 C17 3K2 sing 42 n n 
C18 C35 3K2 doub 43 n y 
C17 C19 3K2 sing 44 n n 
C34 C35 3K2 sing 45 n y 
C02 H1 3K2 sing 46 n n 
C03 H2 3K2 sing 47 n n 
C06 H3 3K2 sing 48 n n 
C10 H4 3K2 sing 49 n n 
C10 H5 3K2 sing 50 n n 
C10 H6 3K2 sing 51 n n 
C11 H7 3K2 sing 52 n n 
C11 H8 3K2 sing 53 n n 
C11 H9 3K2 sing 54 n n 
C12 H10 3K2 sing 55 n n 
C12 H11 3K2 sing 56 n n 
N16 H12 3K2 sing 57 n n 
C17 H13 3K2 sing 58 n n 
C19 H14 3K2 sing 59 n n 
C19 H15 3K2 sing 60 n n 
C19 H16 3K2 sing 61 n n 
C20 H17 3K2 sing 62 n n 
C21 H18 3K2 sing 63 n n 
C23 H19 3K2 sing 64 n n 
C24 H20 3K2 sing 65 n n 
C26 H21 3K2 sing 66 n n 
C27 H22 3K2 sing 67 n n 
C28 H23 3K2 sing 68 n n 
C29 H24 3K2 sing 69 n n 
C31 H25 3K2 sing 70 n n 
C32 H26 3K2 sing 71 n n 
C34 H27 3K2 sing 72 n n 
C35 H28 3K2 sing 73 n n 
O40 H29 3K2 sing 74 n n 
#
_atom_sites.entry_id                     4R6S 
_atom_sites.fract_transf_matrix[1][1]    0.010725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002563 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3K2 A 1 501 1 3K2 LIG . 
D 2 3K2 B 1 501 1 3K2 LIG . 
E 3 HOH A 1 601 1 HOH HOH . 
E 3 HOH A 2 602 2 HOH HOH . 
E 3 HOH A 3 603 3 HOH HOH . 
E 3 HOH A 4 604 4 HOH HOH . 
E 3 HOH A 5 605 5 HOH HOH . 
E 3 HOH A 6 606 6 HOH HOH . 
E 3 HOH A 7 607 14 HOH HOH . 
E 3 HOH A 8 608 15 HOH HOH . 
E 3 HOH A 9 609 18 HOH HOH . 
E 3 HOH A 10 610 19 HOH HOH . 
E 3 HOH A 11 611 20 HOH HOH . 
E 3 HOH A 12 612 23 HOH HOH . 
E 3 HOH A 13 613 24 HOH HOH . 
E 3 HOH A 14 614 27 HOH HOH . 
E 3 HOH A 15 615 28 HOH HOH . 
E 3 HOH A 16 616 30 HOH HOH . 
E 3 HOH A 17 617 31 HOH HOH . 
E 3 HOH A 18 618 33 HOH HOH . 
E 3 HOH A 19 619 34 HOH HOH . 
E 3 HOH A 20 620 35 HOH HOH . 
E 3 HOH A 21 621 36 HOH HOH . 
E 3 HOH A 22 622 38 HOH HOH . 
E 3 HOH A 23 623 39 HOH HOH . 
E 3 HOH A 24 624 40 HOH HOH . 
E 3 HOH A 25 625 41 HOH HOH . 
E 3 HOH A 26 626 42 HOH HOH . 
E 3 HOH A 27 627 44 HOH HOH . 
E 3 HOH A 28 628 46 HOH HOH . 
E 3 HOH A 29 629 61 HOH HOH . 
E 3 HOH A 30 630 68 HOH HOH . 
E 3 HOH A 31 631 69 HOH HOH . 
E 3 HOH A 32 632 70 HOH HOH . 
E 3 HOH A 33 633 71 HOH HOH . 
E 3 HOH A 34 634 72 HOH HOH . 
E 3 HOH A 35 635 73 HOH HOH . 
E 3 HOH A 36 636 81 HOH HOH . 
E 3 HOH A 37 637 83 HOH HOH . 
E 3 HOH A 38 638 86 HOH HOH . 
E 3 HOH A 39 639 87 HOH HOH . 
E 3 HOH A 40 640 88 HOH HOH . 
E 3 HOH A 41 641 89 HOH HOH . 
E 3 HOH A 42 642 90 HOH HOH . 
E 3 HOH A 43 643 91 HOH HOH . 
E 3 HOH A 44 644 92 HOH HOH . 
E 3 HOH A 45 645 93 HOH HOH . 
E 3 HOH A 46 646 94 HOH HOH . 
E 3 HOH A 47 647 96 HOH HOH . 
E 3 HOH A 48 648 98 HOH HOH . 
E 3 HOH A 49 649 99 HOH HOH . 
E 3 HOH A 50 650 100 HOH HOH . 
E 3 HOH A 51 651 101 HOH HOH . 
E 3 HOH A 52 652 112 HOH HOH . 
E 3 HOH A 53 653 123 HOH HOH . 
F 3 HOH B 1 601 7 HOH HOH . 
F 3 HOH B 2 602 8 HOH HOH . 
F 3 HOH B 3 603 9 HOH HOH . 
F 3 HOH B 4 604 10 HOH HOH . 
F 3 HOH B 5 605 11 HOH HOH . 
F 3 HOH B 6 606 12 HOH HOH . 
F 3 HOH B 7 607 13 HOH HOH . 
F 3 HOH B 8 608 16 HOH HOH . 
F 3 HOH B 9 609 17 HOH HOH . 
F 3 HOH B 10 610 21 HOH HOH . 
F 3 HOH B 11 611 22 HOH HOH . 
F 3 HOH B 12 612 25 HOH HOH . 
F 3 HOH B 13 613 26 HOH HOH . 
F 3 HOH B 14 614 32 HOH HOH . 
F 3 HOH B 15 615 47 HOH HOH . 
F 3 HOH B 16 616 48 HOH HOH . 
F 3 HOH B 17 617 49 HOH HOH . 
F 3 HOH B 18 618 50 HOH HOH . 
F 3 HOH B 19 619 51 HOH HOH . 
F 3 HOH B 20 620 52 HOH HOH . 
F 3 HOH B 21 621 53 HOH HOH . 
F 3 HOH B 22 622 54 HOH HOH . 
F 3 HOH B 23 623 55 HOH HOH . 
F 3 HOH B 24 624 56 HOH HOH . 
F 3 HOH B 25 625 57 HOH HOH . 
F 3 HOH B 26 626 58 HOH HOH . 
F 3 HOH B 27 627 59 HOH HOH . 
F 3 HOH B 28 628 62 HOH HOH . 
F 3 HOH B 29 629 63 HOH HOH . 
F 3 HOH B 30 630 64 HOH HOH . 
F 3 HOH B 31 631 65 HOH HOH . 
F 3 HOH B 32 632 66 HOH HOH . 
F 3 HOH B 33 633 67 HOH HOH . 
F 3 HOH B 34 634 74 HOH HOH . 
F 3 HOH B 35 635 75 HOH HOH . 
F 3 HOH B 36 636 76 HOH HOH . 
F 3 HOH B 37 637 77 HOH HOH . 
F 3 HOH B 38 638 78 HOH HOH . 
F 3 HOH B 39 639 79 HOH HOH . 
F 3 HOH B 40 640 80 HOH HOH . 
F 3 HOH B 41 641 84 HOH HOH . 
F 3 HOH B 42 642 85 HOH HOH . 
F 3 HOH B 43 643 95 HOH HOH . 
F 3 HOH B 44 644 97 HOH HOH . 
F 3 HOH B 45 645 102 HOH HOH . 
F 3 HOH B 46 646 103 HOH HOH . 
F 3 HOH B 47 647 104 HOH HOH . 
F 3 HOH B 48 648 105 HOH HOH . 
F 3 HOH B 49 649 106 HOH HOH . 
F 3 HOH B 50 650 107 HOH HOH . 
F 3 HOH B 51 651 108 HOH HOH . 
F 3 HOH B 52 652 109 HOH HOH . 
F 3 HOH B 53 653 110 HOH HOH . 
F 3 HOH B 54 654 111 HOH HOH . 
F 3 HOH B 55 655 113 HOH HOH . 
F 3 HOH B 56 656 114 HOH HOH . 
F 3 HOH B 57 657 115 HOH HOH . 
F 3 HOH B 58 658 116 HOH HOH . 
F 3 HOH B 59 659 117 HOH HOH . 
F 3 HOH B 60 660 118 HOH HOH . 
F 3 HOH B 61 661 120 HOH HOH . 
F 3 HOH B 62 662 121 HOH HOH . 
F 3 HOH B 63 663 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 3K2 . . . C 2 111.146 63.586 15.605 1 78.05 ? C01 3K2 501 A 1 
HETATM 2 C C02 3K2 . . . C 2 111.792 63.509 14.362 1 84.98 ? C02 3K2 501 A 1 
HETATM 3 C C03 3K2 . . . C 2 111.007 63.478 13.193 1 84.54 ? C03 3K2 501 A 1 
HETATM 4 C C04 3K2 . . . C 2 109.616 63.518 13.299 1 87.93 ? C04 3K2 501 A 1 
HETATM 5 C C05 3K2 . . . C 2 108.966 63.605 14.533 1 85.46 ? C05 3K2 501 A 1 
HETATM 6 C C06 3K2 . . . C 2 109.755 63.64 15.681 1 70.15 ? C06 3K2 501 A 1 
HETATM 7 N N07 3K2 . . . C 2 108.612 63.487 12.315 1 87.66 ? N07 3K2 501 A 1 
HETATM 8 C C08 3K2 . . . C 2 107.331 63.548 12.876 1 82.24 ? C08 3K2 501 A 1 
HETATM 9 C C09 3K2 . . . C 2 107.517 63.626 14.289 1 78.08 ? C09 3K2 501 A 1 
HETATM 10 C C10 3K2 . . . C 2 106.441 63.705 15.351 1 74.64 ? C10 3K2 501 A 1 
HETATM 11 C C11 3K2 . . . C 2 106.024 63.549 12.127 1 70.99 ? C11 3K2 501 A 1 
HETATM 12 C C12 3K2 . . . C 2 108.931 63.421 10.899 1 81.75 ? C12 3K2 501 A 1 
HETATM 13 C C13 3K2 . . . C 2 109.072 64.87 10.41 1 94.84 ? C13 3K2 501 A 1 
HETATM 14 C C14 3K2 . . . C 2 111.97 63.679 16.888 1 90.75 ? C14 3K2 501 A 1 
HETATM 15 O O15 3K2 . . . C 2 112.887 62.896 17.115 1 101.46 ? O15 3K2 501 A 1 
HETATM 16 N N16 3K2 . . . C 2 111.606 64.787 17.782 1 90.34 ? N16 3K2 501 A 1 
HETATM 17 C C17 3K2 . . . C 2 112.27 65.131 19.036 1 95.46 ? C17 3K2 501 A 1 
HETATM 18 C C18 3K2 . . . C 2 113.157 66.361 18.762 1 101.24 ? C18 3K2 501 A 1 
HETATM 19 C C19 3K2 . . . C 2 111.292 65.34 20.167 1 82.09 ? C19 3K2 501 A 1 
HETATM 20 C C20 3K2 . . . C 2 108.432 66.018 11.169 1 94.72 ? C20 3K2 501 A 1 
HETATM 21 C C21 3K2 . . . C 2 108.556 67.329 10.721 1 92.23 ? C21 3K2 501 A 1 
HETATM 22 C C22 3K2 . . . C 2 109.325 67.602 9.472 1 79.34 ? C22 3K2 501 A 1 
HETATM 23 C C23 3K2 . . . C 2 109.9 66.556 8.79 1 83.96 ? C23 3K2 501 A 1 
HETATM 24 C C24 3K2 . . . C 2 109.77 65.131 9.268 1 93.65 ? C24 3K2 501 A 1 
HETATM 25 C C25 3K2 . . . C 2 109.503 69.005 8.886 1 82.75 ? C25 3K2 501 A 1 
HETATM 26 C C26 3K2 . . . C 2 110.761 69.47 8.626 1 84.59 ? C26 3K2 501 A 1 
HETATM 27 C C27 3K2 . . . C 2 110.957 70.83 8.029 1 95.17 ? C27 3K2 501 A 1 
HETATM 28 C C28 3K2 . . . C 2 109.883 71.594 7.72 1 101.98 ? C28 3K2 501 A 1 
HETATM 29 C C29 3K2 . . . C 2 108.499 71.08 7.978 1 98.23 ? C29 3K2 501 A 1 
HETATM 30 C C30 3K2 . . . C 2 108.318 69.842 8.526 1 96.17 ? C30 3K2 501 A 1 
HETATM 31 C C31 3K2 . . . C 2 114.148 66.909 19.739 1 105.83 ? C31 3K2 501 A 1 
HETATM 32 C C32 3K2 . . . C 2 114.914 68 19.387 1 116.76 ? C32 3K2 501 A 1 
HETATM 33 C C33 3K2 . . . C 2 114.787 68.648 18.044 1 122.88 ? C33 3K2 501 A 1 
HETATM 34 C C34 3K2 . . . C 2 113.89 68.135 17.158 1 117.13 ? C34 3K2 501 A 1 
HETATM 35 C C35 3K2 . . . C 2 113.051 66.948 17.543 1 109.84 ? C35 3K2 501 A 1 
HETATM 36 N N36 3K2 . . . C 2 115.603 69.794 17.661 1 127.09 ? N36 3K2 501 A 1 
HETATM 37 O O37 3K2 . . . C 2 115.399 70.909 18.121 1 132.71 ? O37 3K2 501 A 1 
HETATM 38 O O38 3K2 . . . C 2 116.571 69.644 16.81 1 117.56 ? O38 3K2 501 A 1 
HETATM 39 C C39 3K2 . . . C 2 106.922 69.369 8.765 1 95.44 ? C39 3K2 501 A 1 
HETATM 40 O O40 3K2 . . . C 2 106.564 68.206 8.421 1 93.16 ? O40 3K2 501 A 1 
HETATM 41 O O41 3K2 . . . C 2 106.093 70.15 9.307 1 92.55 ? O41 3K2 501 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#