data_4R6S # _model_server_result.job_id s0Sw2zv6xqQD-ZtCBDu0dw _model_server_result.datetime_utc '2024-12-01 01:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4R6S # _exptl.entry_id 4R6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-[(2,3-dimethyl-5-{[(1R)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.44 _cell.angle_gamma 90 _cell.entry_id 4R6S _cell.length_a 93.241 _cell.length_b 61.94 _cell.length_c 119.226 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6205 30.97 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C33 H29 N3 O5' _chem_comp.formula_weight 547.6 _chem_comp.id 3K2 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-[(2,3-dimethyl-5-{[(1R)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C29 3K2 doub 1 n y C28 C27 3K2 sing 2 n y C29 C30 3K2 sing 3 n y C27 C26 3K2 doub 4 n y O41 C39 3K2 doub 5 n n C30 C39 3K2 sing 6 n n C30 C25 3K2 doub 7 n y C26 C25 3K2 sing 8 n y C39 O40 3K2 sing 9 n n C21 C20 3K2 doub 10 n y C21 C22 3K2 sing 11 n y C25 C22 3K2 sing 12 n n C20 C13 3K2 sing 13 n y C22 C23 3K2 doub 14 n y C13 C12 3K2 sing 15 n n C13 C24 3K2 doub 16 n y C23 C24 3K2 sing 17 n y C12 N07 3K2 sing 18 n n C11 C08 3K2 sing 19 n n N07 C08 3K2 sing 20 n y N07 C04 3K2 sing 21 n y C08 C09 3K2 doub 22 n y C03 C04 3K2 doub 23 n y C03 C02 3K2 sing 24 n y C04 C05 3K2 sing 25 n y C09 C05 3K2 sing 26 n y C09 C10 3K2 sing 27 n n C02 C01 3K2 doub 28 n y C05 C06 3K2 doub 29 n y C01 C06 3K2 sing 30 n y C01 C14 3K2 sing 31 n n O38 N36 3K2 sing 32 n n C14 O15 3K2 doub 33 n n C14 N16 3K2 sing 34 n n C32 C31 3K2 doub 35 n y C32 C33 3K2 sing 36 n y C31 C18 3K2 sing 37 n y N36 C33 3K2 sing 38 n n N36 O37 3K2 doub 39 n n N16 C17 3K2 sing 40 n n C33 C34 3K2 doub 41 n y C18 C17 3K2 sing 42 n n C18 C35 3K2 doub 43 n y C17 C19 3K2 sing 44 n n C34 C35 3K2 sing 45 n y C02 H1 3K2 sing 46 n n C03 H2 3K2 sing 47 n n C06 H3 3K2 sing 48 n n C10 H4 3K2 sing 49 n n C10 H5 3K2 sing 50 n n C10 H6 3K2 sing 51 n n C11 H7 3K2 sing 52 n n C11 H8 3K2 sing 53 n n C11 H9 3K2 sing 54 n n C12 H10 3K2 sing 55 n n C12 H11 3K2 sing 56 n n N16 H12 3K2 sing 57 n n C17 H13 3K2 sing 58 n n C19 H14 3K2 sing 59 n n C19 H15 3K2 sing 60 n n C19 H16 3K2 sing 61 n n C20 H17 3K2 sing 62 n n C21 H18 3K2 sing 63 n n C23 H19 3K2 sing 64 n n C24 H20 3K2 sing 65 n n C26 H21 3K2 sing 66 n n C27 H22 3K2 sing 67 n n C28 H23 3K2 sing 68 n n C29 H24 3K2 sing 69 n n C31 H25 3K2 sing 70 n n C32 H26 3K2 sing 71 n n C34 H27 3K2 sing 72 n n C35 H28 3K2 sing 73 n n O40 H29 3K2 sing 74 n n # _atom_sites.entry_id 4R6S _atom_sites.fract_transf_matrix[1][1] 0.010725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3K2 A 1 501 1 3K2 LIG . D 2 3K2 B 1 501 1 3K2 LIG . E 3 HOH A 1 601 1 HOH HOH . E 3 HOH A 2 602 2 HOH HOH . E 3 HOH A 3 603 3 HOH HOH . E 3 HOH A 4 604 4 HOH HOH . E 3 HOH A 5 605 5 HOH HOH . E 3 HOH A 6 606 6 HOH HOH . E 3 HOH A 7 607 14 HOH HOH . E 3 HOH A 8 608 15 HOH HOH . E 3 HOH A 9 609 18 HOH HOH . E 3 HOH A 10 610 19 HOH HOH . E 3 HOH A 11 611 20 HOH HOH . E 3 HOH A 12 612 23 HOH HOH . E 3 HOH A 13 613 24 HOH HOH . E 3 HOH A 14 614 27 HOH HOH . E 3 HOH A 15 615 28 HOH HOH . E 3 HOH A 16 616 30 HOH HOH . E 3 HOH A 17 617 31 HOH HOH . E 3 HOH A 18 618 33 HOH HOH . E 3 HOH A 19 619 34 HOH HOH . E 3 HOH A 20 620 35 HOH HOH . E 3 HOH A 21 621 36 HOH HOH . E 3 HOH A 22 622 38 HOH HOH . E 3 HOH A 23 623 39 HOH HOH . E 3 HOH A 24 624 40 HOH HOH . E 3 HOH A 25 625 41 HOH HOH . E 3 HOH A 26 626 42 HOH HOH . E 3 HOH A 27 627 44 HOH HOH . E 3 HOH A 28 628 46 HOH HOH . E 3 HOH A 29 629 61 HOH HOH . E 3 HOH A 30 630 68 HOH HOH . E 3 HOH A 31 631 69 HOH HOH . E 3 HOH A 32 632 70 HOH HOH . E 3 HOH A 33 633 71 HOH HOH . E 3 HOH A 34 634 72 HOH HOH . E 3 HOH A 35 635 73 HOH HOH . E 3 HOH A 36 636 81 HOH HOH . E 3 HOH A 37 637 83 HOH HOH . E 3 HOH A 38 638 86 HOH HOH . E 3 HOH A 39 639 87 HOH HOH . E 3 HOH A 40 640 88 HOH HOH . E 3 HOH A 41 641 89 HOH HOH . E 3 HOH A 42 642 90 HOH HOH . E 3 HOH A 43 643 91 HOH HOH . E 3 HOH A 44 644 92 HOH HOH . E 3 HOH A 45 645 93 HOH HOH . E 3 HOH A 46 646 94 HOH HOH . E 3 HOH A 47 647 96 HOH HOH . E 3 HOH A 48 648 98 HOH HOH . E 3 HOH A 49 649 99 HOH HOH . E 3 HOH A 50 650 100 HOH HOH . E 3 HOH A 51 651 101 HOH HOH . E 3 HOH A 52 652 112 HOH HOH . E 3 HOH A 53 653 123 HOH HOH . F 3 HOH B 1 601 7 HOH HOH . F 3 HOH B 2 602 8 HOH HOH . F 3 HOH B 3 603 9 HOH HOH . F 3 HOH B 4 604 10 HOH HOH . F 3 HOH B 5 605 11 HOH HOH . F 3 HOH B 6 606 12 HOH HOH . F 3 HOH B 7 607 13 HOH HOH . F 3 HOH B 8 608 16 HOH HOH . F 3 HOH B 9 609 17 HOH HOH . F 3 HOH B 10 610 21 HOH HOH . F 3 HOH B 11 611 22 HOH HOH . F 3 HOH B 12 612 25 HOH HOH . F 3 HOH B 13 613 26 HOH HOH . F 3 HOH B 14 614 32 HOH HOH . F 3 HOH B 15 615 47 HOH HOH . F 3 HOH B 16 616 48 HOH HOH . F 3 HOH B 17 617 49 HOH HOH . F 3 HOH B 18 618 50 HOH HOH . F 3 HOH B 19 619 51 HOH HOH . F 3 HOH B 20 620 52 HOH HOH . F 3 HOH B 21 621 53 HOH HOH . F 3 HOH B 22 622 54 HOH HOH . F 3 HOH B 23 623 55 HOH HOH . F 3 HOH B 24 624 56 HOH HOH . F 3 HOH B 25 625 57 HOH HOH . F 3 HOH B 26 626 58 HOH HOH . F 3 HOH B 27 627 59 HOH HOH . F 3 HOH B 28 628 62 HOH HOH . F 3 HOH B 29 629 63 HOH HOH . F 3 HOH B 30 630 64 HOH HOH . F 3 HOH B 31 631 65 HOH HOH . F 3 HOH B 32 632 66 HOH HOH . F 3 HOH B 33 633 67 HOH HOH . F 3 HOH B 34 634 74 HOH HOH . F 3 HOH B 35 635 75 HOH HOH . F 3 HOH B 36 636 76 HOH HOH . F 3 HOH B 37 637 77 HOH HOH . F 3 HOH B 38 638 78 HOH HOH . F 3 HOH B 39 639 79 HOH HOH . F 3 HOH B 40 640 80 HOH HOH . F 3 HOH B 41 641 84 HOH HOH . F 3 HOH B 42 642 85 HOH HOH . F 3 HOH B 43 643 95 HOH HOH . F 3 HOH B 44 644 97 HOH HOH . F 3 HOH B 45 645 102 HOH HOH . F 3 HOH B 46 646 103 HOH HOH . F 3 HOH B 47 647 104 HOH HOH . F 3 HOH B 48 648 105 HOH HOH . F 3 HOH B 49 649 106 HOH HOH . F 3 HOH B 50 650 107 HOH HOH . F 3 HOH B 51 651 108 HOH HOH . F 3 HOH B 52 652 109 HOH HOH . F 3 HOH B 53 653 110 HOH HOH . F 3 HOH B 54 654 111 HOH HOH . F 3 HOH B 55 655 113 HOH HOH . F 3 HOH B 56 656 114 HOH HOH . F 3 HOH B 57 657 115 HOH HOH . F 3 HOH B 58 658 116 HOH HOH . F 3 HOH B 59 659 117 HOH HOH . F 3 HOH B 60 660 118 HOH HOH . F 3 HOH B 61 661 120 HOH HOH . F 3 HOH B 62 662 121 HOH HOH . F 3 HOH B 63 663 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3K2 . . . D 2 128.85 38.941 37.069 1 121.94 ? C01 3K2 501 B 1 HETATM 2 C C02 3K2 . . . D 2 128.742 39.52 38.331 1 123.09 ? C02 3K2 501 B 1 HETATM 3 C C03 3K2 . . . D 2 128.612 38.669 39.433 1 125.22 ? C03 3K2 501 B 1 HETATM 4 C C04 3K2 . . . D 2 128.582 37.295 39.238 1 118.97 ? C04 3K2 501 B 1 HETATM 5 C C05 3K2 . . . D 2 128.684 36.711 37.978 1 106.11 ? C05 3K2 501 B 1 HETATM 6 C C06 3K2 . . . D 2 128.816 37.562 36.893 1 115.3 ? C06 3K2 501 B 1 HETATM 7 N N07 3K2 . . . D 2 128.457 36.262 40.165 1 115.33 ? N07 3K2 501 B 1 HETATM 8 C C08 3K2 . . . D 2 128.469 35.013 39.544 1 103.26 ? C08 3K2 501 B 1 HETATM 9 C C09 3K2 . . . D 2 128.616 35.259 38.147 1 94.89 ? C09 3K2 501 B 1 HETATM 10 C C10 3K2 . . . D 2 128.683 34.235 37.041 1 81.98 ? C10 3K2 501 B 1 HETATM 11 C C11 3K2 . . . D 2 128.349 33.687 40.225 1 109.41 ? C11 3K2 501 B 1 HETATM 12 C C12 3K2 . . . D 2 128.318 36.55 41.58 1 108.53 ? C12 3K2 501 B 1 HETATM 13 C C13 3K2 . . . D 2 129.684 36.508 42.248 1 112.82 ? C13 3K2 501 B 1 HETATM 14 C C14 3K2 . . . D 2 128.991 39.83 35.845 1 124.95 ? C14 3K2 501 B 1 HETATM 15 O O15 3K2 . . . D 2 128.64 41.002 35.913 1 121.76 ? O15 3K2 501 B 1 HETATM 16 N N16 3K2 . . . D 2 129.519 39.236 34.627 1 133.89 ? N16 3K2 501 B 1 HETATM 17 C C17 3K2 . . . D 2 129.673 39.994 33.405 1 144.34 ? C17 3K2 501 B 1 HETATM 18 C C18 3K2 . . . D 2 131.035 40.674 33.271 1 146.23 ? C18 3K2 501 B 1 HETATM 19 C C19 3K2 . . . D 2 129.461 39.066 32.234 1 149.91 ? C19 3K2 501 B 1 HETATM 20 C C20 3K2 . . . D 2 130.851 35.806 41.601 1 109.26 ? C20 3K2 501 B 1 HETATM 21 C C21 3K2 . . . D 2 132.072 35.782 42.248 1 111.35 ? C21 3K2 501 B 1 HETATM 22 C C22 3K2 . . . D 2 132.219 36.447 43.576 1 120.16 ? C22 3K2 501 B 1 HETATM 23 C C23 3K2 . . . D 2 131.146 37.072 44.163 1 122.33 ? C23 3K2 501 B 1 HETATM 24 C C24 3K2 . . . D 2 129.82 37.113 43.456 1 122.87 ? C24 3K2 501 B 1 HETATM 25 C C25 3K2 . . . D 2 133.523 36.423 44.37 1 119.9 ? C25 3K2 501 B 1 HETATM 26 C C26 3K2 . . . D 2 134.117 37.581 44.789 1 117 ? C26 3K2 501 B 1 HETATM 27 C C27 3K2 . . . D 2 135.377 37.519 45.6 1 125.75 ? C27 3K2 501 B 1 HETATM 28 C C28 3K2 . . . D 2 135.915 36.321 45.936 1 131.7 ? C28 3K2 501 B 1 HETATM 29 C C29 3K2 . . . D 2 135.245 35.051 45.497 1 132.73 ? C29 3K2 501 B 1 HETATM 30 C C30 3K2 . . . D 2 134.095 35.095 44.757 1 125.24 ? C30 3K2 501 B 1 HETATM 31 C C31 3K2 . . . D 2 131.45 41.209 31.939 1 151.41 ? C31 3K2 501 B 1 HETATM 32 C C32 3K2 . . . D 2 132.661 41.822 31.797 1 160.3 ? C32 3K2 501 B 1 HETATM 33 C C33 3K2 . . . D 2 133.555 41.952 32.979 1 168.38 ? C33 3K2 501 B 1 HETATM 34 C C34 3K2 . . . D 2 133.174 41.466 34.196 1 155.52 ? C34 3K2 501 B 1 HETATM 35 C C35 3K2 . . . D 2 131.846 40.789 34.35 1 148.16 ? C35 3K2 501 B 1 HETATM 36 N N36 3K2 . . . D 2 134.836 42.6 32.826 1 182.69 ? N36 3K2 501 B 1 HETATM 37 O O37 3K2 . . . D 2 135.394 42.615 31.732 1 182.87 ? O37 3K2 501 B 1 HETATM 38 O O38 3K2 . . . D 2 135.391 43.156 33.851 1 189.53 ? O38 3K2 501 B 1 HETATM 39 C C39 3K2 . . . D 2 133.452 33.808 44.323 1 124.93 ? C39 3K2 501 B 1 HETATM 40 O O40 3K2 . . . D 2 132.201 33.642 44.378 1 123.14 ? O40 3K2 501 B 1 HETATM 41 O O41 3K2 . . . D 2 134.164 32.866 43.88 1 133.87 ? O41 3K2 501 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #