data_4R6V # _model_server_result.job_id ikDhnJ1kshOX0MZAuOj9EA _model_server_result.datetime_utc '2025-07-27 05:39:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4R6V # _exptl.entry_id 4R6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 693.623 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-({[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino}methyl)phenyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R6V _cell.length_a 139.381 _cell.length_b 139.381 _cell.length_c 50.09 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 477 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAV _struct_conn.ptnr2_label_comp_id FI3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FI3 _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.698 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H38 Cl2 N8 O4' _chem_comp.formula_weight 693.623 _chem_comp.id FI3 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-({[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino}methyl)phenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB OBJ FI3 sing 83 n n OBJ CBW FI3 sing 84 n n CAA OBI FI3 sing 85 n n CAU CBW FI3 doub 86 n y CAU CBV FI3 sing 87 n y CBW CBU FI3 sing 88 n y OBI CBV FI3 sing 89 n n CBV CBT FI3 doub 90 n y CBU CLI FI3 sing 91 n n CBU CBX FI3 doub 92 n y CBT CBX FI3 sing 93 n y CBT CLH FI3 sing 94 n n CBX NBG FI3 sing 95 n n NBG CBM FI3 sing 96 n n OAG CBM FI3 doub 97 n n CBM NCB FI3 sing 98 n n N3 C2 FI3 doub 99 n y N3 C4 FI3 sing 100 n y NCB C4 FI3 sing 101 n n NCB CBC FI3 sing 102 n n C2 N1 FI3 sing 103 n y CAM CAO FI3 doub 104 n y CAM CBN FI3 sing 105 n y C4 C5 FI3 doub 106 n y CAO CBO FI3 sing 107 n y CBC CBN FI3 sing 108 n n CBN CAL FI3 doub 109 n y N1 C6 FI3 doub 110 n y C5 C6 FI3 sing 111 n y CBO NBF FI3 sing 112 n n CBO CAN FI3 doub 113 n y C6 NBH FI3 sing 114 n n NBF CBL FI3 sing 115 n n CAL CAN FI3 sing 116 n y NBH CBP FI3 sing 117 n n CBL CAW FI3 sing 118 n n CBL OAF FI3 doub 119 n n CAW CAV FI3 sing 120 n n CAQ CBP FI3 doub 121 n y CAQ CAS FI3 sing 122 n y CBP CAP FI3 sing 123 n y CAS CBR FI3 doub 124 n y CAP CAR FI3 doub 125 n y CBR CAR FI3 sing 126 n y CBR NCA FI3 sing 127 n n CAZ NCA FI3 sing 128 n n CAZ CAX FI3 sing 129 n n NCA CBA FI3 sing 130 n n CAX NBZ FI3 sing 131 n n CBA CAY FI3 sing 132 n n NBZ CAY FI3 sing 133 n n NBZ CAC FI3 sing 134 n n CAV H1 FI3 sing 135 n n CAV H2 FI3 sing 136 n n CAV H3 FI3 sing 137 n n CAW H4 FI3 sing 138 n n CAW H5 FI3 sing 139 n n NBF H6 FI3 sing 140 n n CAO H7 FI3 sing 141 n n CAM H8 FI3 sing 142 n n CAN H9 FI3 sing 143 n n CAL H10 FI3 sing 144 n n CBC H11 FI3 sing 145 n n CBC H12 FI3 sing 146 n n NBG H13 FI3 sing 147 n n CAA H14 FI3 sing 148 n n CAA H15 FI3 sing 149 n n CAA H16 FI3 sing 150 n n CAU H17 FI3 sing 151 n n CAB H18 FI3 sing 152 n n CAB H19 FI3 sing 153 n n CAB H20 FI3 sing 154 n n C5 H21 FI3 sing 155 n n C2 H22 FI3 sing 156 n n NBH H23 FI3 sing 157 n n CAQ H24 FI3 sing 158 n n CAS H25 FI3 sing 159 n n CAP H26 FI3 sing 160 n n CAR H27 FI3 sing 161 n n CAZ H28 FI3 sing 162 n n CAZ H29 FI3 sing 163 n n CAX H30 FI3 sing 164 n n CAX H31 FI3 sing 165 n n CAC H33 FI3 sing 166 n n CAC H34 FI3 sing 167 n n CAC H35 FI3 sing 168 n n CAY H36 FI3 sing 169 n n CAY H37 FI3 sing 170 n n CBA H38 FI3 sing 171 n n CBA H39 FI3 sing 172 n n # _atom_sites.entry_id 4R6V _atom_sites.fract_transf_matrix[1][1] 0.007175 _atom_sites.fract_transf_matrix[1][2] 0.004142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FI3 A 1 801 1 FI3 FI3 . C 3 SO4 A 1 802 1 SO4 SO4 . D 3 SO4 A 1 803 2 SO4 SO4 . E 4 HOH A 1 901 1 HOH HOH . E 4 HOH A 2 902 2 HOH HOH . E 4 HOH A 3 903 3 HOH HOH . E 4 HOH A 4 904 4 HOH HOH . E 4 HOH A 5 905 5 HOH HOH . E 4 HOH A 6 906 6 HOH HOH . E 4 HOH A 7 907 7 HOH HOH . E 4 HOH A 8 908 8 HOH HOH . E 4 HOH A 9 909 9 HOH HOH . E 4 HOH A 10 910 10 HOH HOH . E 4 HOH A 11 911 11 HOH HOH . E 4 HOH A 12 912 12 HOH HOH . E 4 HOH A 13 913 13 HOH HOH . E 4 HOH A 14 914 14 HOH HOH . E 4 HOH A 15 915 15 HOH HOH . E 4 HOH A 16 916 16 HOH HOH . E 4 HOH A 17 917 17 HOH HOH . E 4 HOH A 18 918 18 HOH HOH . E 4 HOH A 19 919 19 HOH HOH . E 4 HOH A 20 920 20 HOH HOH . E 4 HOH A 21 921 21 HOH HOH . E 4 HOH A 22 922 22 HOH HOH . E 4 HOH A 23 923 23 HOH HOH . E 4 HOH A 24 924 24 HOH HOH . E 4 HOH A 25 925 25 HOH HOH . E 4 HOH A 26 926 26 HOH HOH . E 4 HOH A 27 927 27 HOH HOH . E 4 HOH A 28 928 28 HOH HOH . E 4 HOH A 29 929 29 HOH HOH . E 4 HOH A 30 930 30 HOH HOH . E 4 HOH A 31 931 31 HOH HOH . E 4 HOH A 32 932 32 HOH HOH . E 4 HOH A 33 933 33 HOH HOH . E 4 HOH A 34 934 34 HOH HOH . E 4 HOH A 35 935 35 HOH HOH . E 4 HOH A 36 936 36 HOH HOH . E 4 HOH A 37 937 37 HOH HOH . E 4 HOH A 38 938 38 HOH HOH . E 4 HOH A 39 939 39 HOH HOH . E 4 HOH A 40 940 40 HOH HOH . E 4 HOH A 41 941 41 HOH HOH . E 4 HOH A 42 942 42 HOH HOH . E 4 HOH A 43 943 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV FI3 . . . B 2 -51.477 146.146 2.718 1 61.08 ? CAV FI3 801 A 1 HETATM 2 C CAW FI3 . . . B 2 -52.374 147.301 2.815 1 60.61 ? CAW FI3 801 A 1 HETATM 3 C CBL FI3 . . . B 2 -53.671 146.961 2.079 1 59.54 ? CBL FI3 801 A 1 HETATM 4 O OAF FI3 . . . B 2 -53.606 146.788 0.865 1 60.27 ? OAF FI3 801 A 1 HETATM 5 N NBF FI3 . . . B 2 -54.932 146.829 2.85 1 56.58 ? NBF FI3 801 A 1 HETATM 6 C CBO FI3 . . . B 2 -56.205 146.489 2.301 1 52.53 ? CBO FI3 801 A 1 HETATM 7 C CAO FI3 . . . B 2 -57.289 146.151 3.118 1 49.72 ? CAO FI3 801 A 1 HETATM 8 C CAM FI3 . . . B 2 -58.493 145.823 2.565 1 47.25 ? CAM FI3 801 A 1 HETATM 9 C CAN FI3 . . . B 2 -56.347 146.463 0.961 1 51.61 ? CAN FI3 801 A 1 HETATM 10 C CAL FI3 . . . B 2 -57.539 146.13 0.401 1 48.58 ? CAL FI3 801 A 1 HETATM 11 C CBN FI3 . . . B 2 -58.583 145.813 1.208 1 45.16 ? CBN FI3 801 A 1 HETATM 12 C CBC FI3 . . . B 2 -59.813 145.488 0.426 1 40.71 ? CBC FI3 801 A 1 HETATM 13 N NCB FI3 . . . B 2 -60.981 144.852 1.066 1 37.25 ? NCB FI3 801 A 1 HETATM 14 C CBM FI3 . . . B 2 -60.999 143.425 1.228 1 35.65 ? CBM FI3 801 A 1 HETATM 15 O OAG FI3 . . . B 2 -60.061 142.832 0.902 1 35.83 ? OAG FI3 801 A 1 HETATM 16 N NBG FI3 . . . B 2 -62.147 142.783 1.761 1 34.38 ? NBG FI3 801 A 1 HETATM 17 C CBX FI3 . . . B 2 -62.235 141.34 1.947 1 35.26 ? CBX FI3 801 A 1 HETATM 18 C CBU FI3 . . . B 2 -62.117 140.424 0.906 1 36.16 ? CBU FI3 801 A 1 HETATM 19 CL CLI FI3 . . . B 2 -61.82 140.875 -0.729 1 33.31 ? CLI FI3 801 A 1 HETATM 20 C CBT FI3 . . . B 2 -62.49 140.894 3.209 1 36.19 ? CBT FI3 801 A 1 HETATM 21 CL CLH FI3 . . . B 2 -62.636 142.134 4.317 1 36.94 ? CLH FI3 801 A 1 HETATM 22 C CBV FI3 . . . B 2 -62.623 139.562 3.487 1 37.51 ? CBV FI3 801 A 1 HETATM 23 O OBI FI3 . . . B 2 -62.876 139.144 4.801 1 38.63 ? OBI FI3 801 A 1 HETATM 24 C CAA FI3 . . . B 2 -63.566 137.994 4.972 1 38.31 ? CAA FI3 801 A 1 HETATM 25 C CAU FI3 . . . B 2 -62.475 138.66 2.432 1 37.45 ? CAU FI3 801 A 1 HETATM 26 C CBW FI3 . . . B 2 -62.23 139.083 1.151 1 38.1 ? CBW FI3 801 A 1 HETATM 27 O OBJ FI3 . . . B 2 -62.103 138.191 0.058 1 39.45 ? OBJ FI3 801 A 1 HETATM 28 C CAB FI3 . . . B 2 -61.902 136.822 0.336 1 39.65 ? CAB FI3 801 A 1 HETATM 29 C C4 FI3 . . . B 2 -62.092 145.665 1.402 1 34.28 ? C4 FI3 801 A 1 HETATM 30 C C5 FI3 . . . B 2 -61.945 147.037 1.507 1 34.34 ? C5 FI3 801 A 1 HETATM 31 N N3 FI3 . . . B 2 -63.258 145.132 1.609 1 32.01 ? N3 FI3 801 A 1 HETATM 32 C C2 FI3 . . . B 2 -64.258 145.948 1.909 1 32.12 ? C2 FI3 801 A 1 HETATM 33 N N1 FI3 . . . B 2 -64.214 147.249 2.028 1 33.56 ? N1 FI3 801 A 1 HETATM 34 C C6 FI3 . . . B 2 -63.07 147.835 1.844 1 35.07 ? C6 FI3 801 A 1 HETATM 35 N NBH FI3 . . . B 2 -62.948 149.194 1.95 1 38.05 ? NBH FI3 801 A 1 HETATM 36 C CBP FI3 . . . B 2 -61.711 149.792 2.054 1 41.2 ? CBP FI3 801 A 1 HETATM 37 C CAQ FI3 . . . B 2 -60.744 149.218 2.883 1 42.85 ? CAQ FI3 801 A 1 HETATM 38 C CAS FI3 . . . B 2 -59.496 149.795 3.028 1 45.13 ? CAS FI3 801 A 1 HETATM 39 C CAP FI3 . . . B 2 -61.449 150.93 1.391 1 43.34 ? CAP FI3 801 A 1 HETATM 40 C CAR FI3 . . . B 2 -60.195 151.51 1.53 1 46.06 ? CAR FI3 801 A 1 HETATM 41 C CBR FI3 . . . B 2 -59.232 150.896 2.355 1 48.56 ? CBR FI3 801 A 1 HETATM 42 N NCA FI3 . . . B 2 -57.903 151.448 2.542 1 53.74 ? NCA FI3 801 A 1 HETATM 43 C CAZ FI3 . . . B 2 -57.535 152.593 1.966 1 55.38 ? CAZ FI3 801 A 1 HETATM 44 C CAX FI3 . . . B 2 -56.224 153.049 2.191 1 57.35 ? CAX FI3 801 A 1 HETATM 45 N NBZ FI3 . . . B 2 -55.368 152.375 2.98 1 58.24 ? NBZ FI3 801 A 1 HETATM 46 C CAC FI3 . . . B 2 -54.084 152.847 3.199 1 58.41 ? CAC FI3 801 A 1 HETATM 47 C CAY FI3 . . . B 2 -55.751 151.23 3.543 1 57.67 ? CAY FI3 801 A 1 HETATM 48 C CBA FI3 . . . B 2 -57.059 150.748 3.319 1 55.91 ? CBA FI3 801 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #