data_4R6Z # _model_server_result.job_id QLdof036fiRzlcb-g2HgdQ _model_server_result.datetime_utc '2025-07-13 04:02:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":208}' # _entry.id 4R6Z # _exptl.entry_id 4R6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R6Z _cell.length_a 68.17 _cell.length_b 68.17 _cell.length_c 90.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,V 1 1,2,3,4 B,L,M,N,O,P,Q,R,S,T,U,W 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 136.34 136.34 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 136.34 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 136.34 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 46 A THR 63 1_555 D CS CS . A CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc2 A O VAL 47 A VAL 64 1_555 C CS CS . A CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.441 ? metalc ? metalc3 A O VAL 47 A VAL 64 1_555 D CS CS . A CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 A O GLY 48 A GLY 65 1_555 C CS CS . A CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.319 ? metalc ? metalc5 B O THR 46 B THR 63 1_555 M CS CS . B CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc6 B OG1 THR 46 B THR 63 1_555 N CS CS . B CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc7 B O THR 46 B THR 63 1_555 N CS CS . B CS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc8 B O VAL 47 B VAL 64 1_555 L CS CS . B CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.435 ? metalc ? metalc9 B O VAL 47 B VAL 64 1_555 M CS CS . B CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc10 B O GLY 48 B GLY 65 1_555 L CS CS . B CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.396 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 107 n n N H GLY sing 108 n n N H2 GLY sing 109 n n CA C GLY sing 110 n n CA HA2 GLY sing 111 n n CA HA3 GLY sing 112 n n C O GLY doub 113 n n C OXT GLY sing 114 n n OXT HXT GLY sing 115 n n # _atom_sites.entry_id 4R6Z _atom_sites.fract_transf_matrix[1][1] 0.014669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CS A 1 201 1 CS CS . D 2 CS A 1 202 4 CS CS . E 3 MPD A 1 203 1 MPD MPD . F 3 MPD A 1 204 2 MPD MPD . G 4 GLY A 1 205 2 GLY GLY . H 4 GLY A 1 206 4 GLY GLY . I 4 GLY A 1 207 6 GLY GLY . J 4 GLY A 1 208 9 GLY GLY . K 4 GLY A 1 209 11 GLY GLY . L 2 CS B 1 201 2 CS CS . M 2 CS B 1 202 3 CS CS . N 2 CS B 1 203 5 CS CS . O 4 GLY B 1 204 1 GLY GLY . P 4 GLY B 1 205 3 GLY GLY . Q 4 GLY B 1 206 5 GLY GLY . R 4 GLY B 1 207 7 GLY GLY . S 4 GLY B 1 208 8 GLY GLY . T 4 GLY B 1 209 10 GLY GLY . U 4 GLY B 1 210 12 GLY GLY . V 5 HOH A 1 301 8 HOH HOH . V 5 HOH A 2 302 12 HOH HOH . V 5 HOH A 3 303 14 HOH HOH . V 5 HOH A 4 304 17 HOH HOH . V 5 HOH A 5 305 21 HOH HOH . V 5 HOH A 6 306 23 HOH HOH . V 5 HOH A 7 307 24 HOH HOH . V 5 HOH A 8 308 26 HOH HOH . V 5 HOH A 9 309 29 HOH HOH . V 5 HOH A 10 310 31 HOH HOH . V 5 HOH A 11 311 32 HOH HOH . V 5 HOH A 12 312 37 HOH HOH . V 5 HOH A 13 313 41 HOH HOH . V 5 HOH A 14 314 43 HOH HOH . V 5 HOH A 15 315 44 HOH HOH . V 5 HOH A 16 316 46 HOH HOH . V 5 HOH A 17 317 47 HOH HOH . V 5 HOH A 18 318 55 HOH HOH . V 5 HOH A 19 319 58 HOH HOH . V 5 HOH A 20 320 59 HOH HOH . V 5 HOH A 21 321 60 HOH HOH . V 5 HOH A 22 322 64 HOH HOH . W 5 HOH B 1 301 48 HOH HOH . W 5 HOH B 2 302 1 HOH HOH . W 5 HOH B 3 303 2 HOH HOH . W 5 HOH B 4 304 3 HOH HOH . W 5 HOH B 5 305 4 HOH HOH . W 5 HOH B 6 306 5 HOH HOH . W 5 HOH B 7 307 6 HOH HOH . W 5 HOH B 8 308 7 HOH HOH . W 5 HOH B 9 309 9 HOH HOH . W 5 HOH B 10 310 10 HOH HOH . W 5 HOH B 11 311 11 HOH HOH . W 5 HOH B 12 312 13 HOH HOH . W 5 HOH B 13 313 15 HOH HOH . W 5 HOH B 14 314 16 HOH HOH . W 5 HOH B 15 315 18 HOH HOH . W 5 HOH B 16 316 19 HOH HOH . W 5 HOH B 17 317 20 HOH HOH . W 5 HOH B 18 318 22 HOH HOH . W 5 HOH B 19 319 25 HOH HOH . W 5 HOH B 20 320 27 HOH HOH . W 5 HOH B 21 321 28 HOH HOH . W 5 HOH B 22 322 30 HOH HOH . W 5 HOH B 23 323 33 HOH HOH . W 5 HOH B 24 324 34 HOH HOH . W 5 HOH B 25 325 35 HOH HOH . W 5 HOH B 26 326 36 HOH HOH . W 5 HOH B 27 327 38 HOH HOH . W 5 HOH B 28 328 39 HOH HOH . W 5 HOH B 29 329 40 HOH HOH . W 5 HOH B 30 330 42 HOH HOH . W 5 HOH B 31 331 45 HOH HOH . W 5 HOH B 32 332 49 HOH HOH . W 5 HOH B 33 333 50 HOH HOH . W 5 HOH B 34 334 51 HOH HOH . W 5 HOH B 35 335 52 HOH HOH . W 5 HOH B 36 336 53 HOH HOH . W 5 HOH B 37 337 54 HOH HOH . W 5 HOH B 38 338 56 HOH HOH . W 5 HOH B 39 339 57 HOH HOH . W 5 HOH B 40 340 61 HOH HOH . W 5 HOH B 41 341 62 HOH HOH . W 5 HOH B 42 342 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . J 4 64.155 53.795 49.693 1 74.54 ? N GLY 208 A 1 HETATM 2 C CA GLY . . . J 4 63.26 53.118 48.701 1 83.07 ? CA GLY 208 A 1 HETATM 3 C C GLY . . . J 4 61.877 53.742 48.63 1 78.14 ? C GLY 208 A 1 HETATM 4 O O GLY . . . J 4 61.426 54.386 49.58 1 77.36 ? O GLY 208 A 1 HETATM 5 O OXT GLY . . . J 4 61.18 53.614 47.623 1 69.21 ? OXT GLY 208 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #