data_4R70 # _model_server_result.job_id meZM6VkGyid2GNhKOe3yrw _model_server_result.datetime_utc '2024-11-23 08:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 4R70 # _exptl.entry_id 4R70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R70 _cell.length_a 143.307 _cell.length_b 143.307 _cell.length_c 120.512 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 40.170667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 28 A CYS 28 1_555 C CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? covale ? covale2 B SG CYS 28 B CYS 28 1_555 D CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 4R70 _atom_sites.fract_transf_matrix[1][1] 0.006978 _atom_sites.fract_transf_matrix[1][2] 0.004029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . E 3 HOH A 1 1001 1 HOH HOH . E 3 HOH A 2 1002 4 HOH HOH . E 3 HOH A 3 1003 5 HOH HOH . E 3 HOH A 4 1004 10 HOH HOH . E 3 HOH A 5 1005 13 HOH HOH . E 3 HOH A 6 1006 18 HOH HOH . E 3 HOH A 7 1007 19 HOH HOH . E 3 HOH A 8 1008 20 HOH HOH . E 3 HOH A 9 1009 21 HOH HOH . E 3 HOH A 10 1010 24 HOH HOH . E 3 HOH A 11 1011 26 HOH HOH . E 3 HOH A 12 1012 28 HOH HOH . E 3 HOH A 13 1013 30 HOH HOH . E 3 HOH A 14 1014 31 HOH HOH . E 3 HOH A 15 1015 32 HOH HOH . E 3 HOH A 16 1016 34 HOH HOH . F 3 HOH B 1 1001 2 HOH HOH . F 3 HOH B 2 1002 6 HOH HOH . F 3 HOH B 3 1003 7 HOH HOH . F 3 HOH B 4 1004 12 HOH HOH . F 3 HOH B 5 1005 25 HOH HOH . F 3 HOH B 6 1006 27 HOH HOH . F 3 HOH B 7 1007 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . C 2 -1.9 67.346 0.044 1 109.85 ? CHA BLA 900 A 1 HETATM 2 N NA BLA . . . C 2 -1.815 69.572 1.113 1 90.72 ? NA BLA 900 A 1 HETATM 3 C C1A BLA . . . C 2 -1.778 68.239 1.117 1 101.48 ? C1A BLA 900 A 1 HETATM 4 C C2A BLA . . . C 2 -1.611 67.859 2.437 1 101.99 ? C2A BLA 900 A 1 HETATM 5 C C3A BLA . . . C 2 -1.585 69.055 3.153 1 98.09 ? C3A BLA 900 A 1 HETATM 6 C C4A BLA . . . C 2 -1.674 70.12 2.299 1 90.69 ? C4A BLA 900 A 1 HETATM 7 C CMA BLA . . . C 2 -1.467 69.12 4.661 1 91.46 ? CMA BLA 900 A 1 HETATM 8 C CAA BLA . . . C 2 -1.499 66.424 3.002 1 97.8 ? CAA BLA 900 A 1 HETATM 9 C CBA BLA . . . C 2 -0.022 65.94 3.238 1 91.88 ? CBA BLA 900 A 1 HETATM 10 C CGA BLA . . . C 2 0.771 66.812 4.272 1 113.49 ? CGA BLA 900 A 1 HETATM 11 O O1A BLA . . . C 2 1.6 67.631 3.788 1 105.99 ? O1A BLA 900 A 1 HETATM 12 O O2A BLA . . . C 2 0.518 66.707 5.521 1 110.67 ? O2A BLA 900 A 1 HETATM 13 C CHB BLA . . . C 2 -1.774 71.612 2.483 1 90.95 ? CHB BLA 900 A 1 HETATM 14 N NB BLA . . . C 2 -0.43 71.747 4.574 1 104.26 ? NB BLA 900 A 1 HETATM 15 C C1B BLA . . . C 2 -1.315 72.247 3.732 1 97.41 ? C1B BLA 900 A 1 HETATM 16 C C2B BLA . . . C 2 -1.652 73.513 4.179 1 101.07 ? C2B BLA 900 A 1 HETATM 17 C C3B BLA . . . C 2 -0.911 73.77 5.295 1 105.19 ? C3B BLA 900 A 1 HETATM 18 C C4B BLA . . . C 2 -0.196 72.616 5.552 1 106.05 ? C4B BLA 900 A 1 HETATM 19 C CMB BLA . . . C 2 -2.565 74.527 3.543 1 106.06 ? CMB BLA 900 A 1 HETATM 20 O OB BLA . . . C 2 0.563 72.436 6.502 1 106.68 ? OB BLA 900 A 1 HETATM 21 C CAB BLA . . . C 2 -0.959 74.955 6.011 1 111.15 ? CAB BLA 900 A 1 HETATM 22 C CBB BLA . . . C 2 -0.196 75.192 7.138 1 82.14 ? CBB BLA 900 A 1 HETATM 23 N NC BLA . . . C 2 -1.749 71.99 -3.096 1 132.27 ? NC BLA 900 A 1 HETATM 24 C C1C BLA . . . C 2 -1.485 73.265 -3.381 1 134.06 ? C1C BLA 900 A 1 HETATM 25 C C2C BLA . . . C 2 -1.746 73.503 -4.679 1 136.94 ? C2C BLA 900 A 1 HETATM 26 C C3C BLA . . . C 2 -2.191 72.334 -5.241 1 135.81 ? C3C BLA 900 A 1 HETATM 27 C C4C BLA . . . C 2 -2.178 71.382 -4.2 1 126.13 ? C4C BLA 900 A 1 HETATM 28 C CMC BLA . . . C 2 -1.557 74.868 -5.307 1 142.83 ? CMC BLA 900 A 1 HETATM 29 O OC BLA . . . C 2 -1.065 74.157 -2.656 1 133.3 ? OC BLA 900 A 1 HETATM 30 C CAC BLA . . . C 2 -2.606 72.186 -6.711 1 139.87 ? CAC BLA 900 A 1 HETATM 31 C CBC BLA . . . C 2 -4.095 72.482 -6.836 1 138 ? CBC BLA 900 A 1 HETATM 32 C CHD BLA . . . C 2 -2.602 69.906 -4.337 1 114.16 ? CHD BLA 900 A 1 HETATM 33 N ND BLA . . . C 2 -2.161 68.971 -1.921 1 105.19 ? ND BLA 900 A 1 HETATM 34 C C1D BLA . . . C 2 -2.467 68.852 -3.214 1 100.16 ? C1D BLA 900 A 1 HETATM 35 C C2D BLA . . . C 2 -2.732 67.505 -3.397 1 101.87 ? C2D BLA 900 A 1 HETATM 36 C C3D BLA . . . C 2 -2.501 66.826 -2.207 1 103.78 ? C3D BLA 900 A 1 HETATM 37 C C4D BLA . . . C 2 -2.097 67.781 -1.289 1 109.89 ? C4D BLA 900 A 1 HETATM 38 C CMD BLA . . . C 2 -3.147 66.858 -4.715 1 107.36 ? CMD BLA 900 A 1 HETATM 39 C CAD BLA . . . C 2 -2.653 65.324 -1.896 1 97.74 ? CAD BLA 900 A 1 HETATM 40 C CBD BLA . . . C 2 -1.575 64.445 -2.452 1 102.79 ? CBD BLA 900 A 1 HETATM 41 C CGD BLA . . . C 2 -1.88 63.021 -2.057 1 104.76 ? CGD BLA 900 A 1 HETATM 42 O O1D BLA . . . C 2 -1.664 62.233 -3.016 1 95.44 ? O1D BLA 900 A 1 HETATM 43 O O2D BLA . . . C 2 -2.254 62.768 -0.842 1 87.04 ? O2D BLA 900 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #