data_4R70 # _model_server_result.job_id c-E7Pt6eyd33LqCz2gjUIQ _model_server_result.datetime_utc '2024-11-27 01:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4R70 # _exptl.entry_id 4R70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R70 _cell.length_a 143.307 _cell.length_b 143.307 _cell.length_c 120.512 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 40.170667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 28 A CYS 28 1_555 C CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? covale ? covale2 B SG CYS 28 B CYS 28 1_555 D CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 4R70 _atom_sites.fract_transf_matrix[1][1] 0.006978 _atom_sites.fract_transf_matrix[1][2] 0.004029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . E 3 HOH A 1 1001 1 HOH HOH . E 3 HOH A 2 1002 4 HOH HOH . E 3 HOH A 3 1003 5 HOH HOH . E 3 HOH A 4 1004 10 HOH HOH . E 3 HOH A 5 1005 13 HOH HOH . E 3 HOH A 6 1006 18 HOH HOH . E 3 HOH A 7 1007 19 HOH HOH . E 3 HOH A 8 1008 20 HOH HOH . E 3 HOH A 9 1009 21 HOH HOH . E 3 HOH A 10 1010 24 HOH HOH . E 3 HOH A 11 1011 26 HOH HOH . E 3 HOH A 12 1012 28 HOH HOH . E 3 HOH A 13 1013 30 HOH HOH . E 3 HOH A 14 1014 31 HOH HOH . E 3 HOH A 15 1015 32 HOH HOH . E 3 HOH A 16 1016 34 HOH HOH . F 3 HOH B 1 1001 2 HOH HOH . F 3 HOH B 2 1002 6 HOH HOH . F 3 HOH B 3 1003 7 HOH HOH . F 3 HOH B 4 1004 12 HOH HOH . F 3 HOH B 5 1005 25 HOH HOH . F 3 HOH B 6 1006 27 HOH HOH . F 3 HOH B 7 1007 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . D 2 -31.871 65.816 57.421 1 138.78 ? CHA BLA 900 B 1 HETATM 2 N NA BLA . . . D 2 -29.59 65.067 57.683 1 126.55 ? NA BLA 900 B 1 HETATM 3 C C1A BLA . . . D 2 -30.508 65.876 57.203 1 127.11 ? C1A BLA 900 B 1 HETATM 4 C C2A BLA . . . D 2 -29.897 66.751 56.313 1 123.04 ? C2A BLA 900 B 1 HETATM 5 C C3A BLA . . . D 2 -28.533 66.423 56.352 1 133.78 ? C3A BLA 900 B 1 HETATM 6 C C4A BLA . . . D 2 -28.387 65.354 57.247 1 125.5 ? C4A BLA 900 B 1 HETATM 7 C CMA BLA . . . D 2 -27.46 67.181 55.488 1 108.67 ? CMA BLA 900 B 1 HETATM 8 C CAA BLA . . . D 2 -30.522 67.88 55.483 1 117.75 ? CAA BLA 900 B 1 HETATM 9 C CBA BLA . . . D 2 -30.487 69.297 56.068 1 124.05 ? CBA BLA 900 B 1 HETATM 10 C CGA BLA . . . D 2 -29.107 69.865 56.36 1 143.79 ? CGA BLA 900 B 1 HETATM 11 O O1A BLA . . . D 2 -28.476 69.315 57.273 1 156.18 ? O1A BLA 900 B 1 HETATM 12 O O2A BLA . . . D 2 -28.719 70.87 55.734 1 147.23 ? O2A BLA 900 B 1 HETATM 13 C CHB BLA . . . D 2 -27.304 64.451 57.792 1 129.61 ? CHB BLA 900 B 1 HETATM 14 N NB BLA . . . D 2 -25.523 66.156 57.524 1 141.76 ? NB BLA 900 B 1 HETATM 15 C C1B BLA . . . D 2 -25.923 64.891 57.543 1 137.43 ? C1B BLA 900 B 1 HETATM 16 C C2B BLA . . . D 2 -24.862 64.028 57.28 1 136.19 ? C2B BLA 900 B 1 HETATM 17 C C3B BLA . . . D 2 -23.774 64.817 57.104 1 132.92 ? C3B BLA 900 B 1 HETATM 18 C C4B BLA . . . D 2 -24.225 66.13 57.232 1 134.01 ? C4B BLA 900 B 1 HETATM 19 C CMB BLA . . . D 2 -24.849 62.494 57.238 1 135.87 ? CMB BLA 900 B 1 HETATM 20 O OB BLA . . . D 2 -23.586 67.167 57.125 1 124.35 ? OB BLA 900 B 1 HETATM 21 C CAB BLA . . . D 2 -22.51 64.333 56.846 1 131.33 ? CAB BLA 900 B 1 HETATM 22 C CBB BLA . . . D 2 -21.433 65.19 56.676 1 122.66 ? CBB BLA 900 B 1 HETATM 23 N NC BLA . . . D 2 -30.641 61.934 61.515 1 171.97 ? NC BLA 900 B 1 HETATM 24 C C1C BLA . . . D 2 -29.953 61.128 62.341 1 174.41 ? C1C BLA 900 B 1 HETATM 25 C C2C BLA . . . D 2 -30.829 60.277 62.964 1 169.67 ? C2C BLA 900 B 1 HETATM 26 C C3C BLA . . . D 2 -32.1 60.56 62.511 1 169.72 ? C3C BLA 900 B 1 HETATM 27 C C4C BLA . . . D 2 -31.953 61.619 61.596 1 171.53 ? C4C BLA 900 B 1 HETATM 28 C CMC BLA . . . D 2 -30.434 59.224 63.961 1 165.97 ? CMC BLA 900 B 1 HETATM 29 O OC BLA . . . D 2 -28.731 61.118 62.543 1 175.23 ? OC BLA 900 B 1 HETATM 30 C CAC BLA . . . D 2 -33.418 59.872 62.923 1 169.59 ? CAC BLA 900 B 1 HETATM 31 C CBC BLA . . . D 2 -33.532 58.424 62.445 1 169.04 ? CBC BLA 900 B 1 HETATM 32 C CHD BLA . . . D 2 -33.173 62.231 60.844 1 145.88 ? CHD BLA 900 B 1 HETATM 33 N ND BLA . . . D 2 -32.002 63.989 59.166 1 153.64 ? ND BLA 900 B 1 HETATM 34 C C1D BLA . . . D 2 -33.025 63.346 59.774 1 157.81 ? C1D BLA 900 B 1 HETATM 35 C C2D BLA . . . D 2 -34.177 63.845 59.24 1 156.61 ? C2D BLA 900 B 1 HETATM 36 C C3D BLA . . . D 2 -33.881 64.821 58.316 1 157.18 ? C3D BLA 900 B 1 HETATM 37 C C4D BLA . . . D 2 -32.481 64.925 58.337 1 148.36 ? C4D BLA 900 B 1 HETATM 38 C CMD BLA . . . D 2 -35.559 63.364 59.618 1 159.6 ? CMD BLA 900 B 1 HETATM 39 C CAD BLA . . . D 2 -34.873 65.632 57.471 1 156.7 ? CAD BLA 900 B 1 HETATM 40 C CBD BLA . . . D 2 -35.701 66.559 58.339 1 164.13 ? CBD BLA 900 B 1 HETATM 41 C CGD BLA . . . D 2 -36.583 67.328 57.399 1 167.74 ? CGD BLA 900 B 1 HETATM 42 O O1D BLA . . . D 2 -37.752 67.629 57.726 1 174.52 ? O1D BLA 900 B 1 HETATM 43 O O2D BLA . . . D 2 -35.984 67.702 56.382 1 164.24 ? O2D BLA 900 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 47 _model_server_stats.element_count 43 #