data_4R7A # _model_server_result.job_id MdT2HfDi21MziipiP7gZoA _model_server_result.datetime_utc '2024-11-22 06:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4R7A # _exptl.entry_id 4R7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R7A _cell.length_a 50.63 _cell.length_b 87.55 _cell.length_c 95.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4R7A _atom_sites.fract_transf_matrix[1][1] 0.019751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL B 1 501 1 GOL GOL . D 4 HOH A 1 201 172 HOH HOH . D 4 HOH A 2 202 289 HOH HOH . E 4 HOH B 1 601 1 HOH HOH . E 4 HOH B 2 602 2 HOH HOH . E 4 HOH B 3 603 3 HOH HOH . E 4 HOH B 4 604 4 HOH HOH . E 4 HOH B 5 605 5 HOH HOH . E 4 HOH B 6 606 6 HOH HOH . E 4 HOH B 7 607 7 HOH HOH . E 4 HOH B 8 608 8 HOH HOH . E 4 HOH B 9 609 9 HOH HOH . E 4 HOH B 10 610 10 HOH HOH . E 4 HOH B 11 611 11 HOH HOH . E 4 HOH B 12 612 12 HOH HOH . E 4 HOH B 13 613 13 HOH HOH . E 4 HOH B 14 614 14 HOH HOH . E 4 HOH B 15 615 15 HOH HOH . E 4 HOH B 16 616 16 HOH HOH . E 4 HOH B 17 617 17 HOH HOH . E 4 HOH B 18 618 18 HOH HOH . E 4 HOH B 19 619 19 HOH HOH . E 4 HOH B 20 620 20 HOH HOH . E 4 HOH B 21 621 21 HOH HOH . E 4 HOH B 22 622 22 HOH HOH . E 4 HOH B 23 623 24 HOH HOH . E 4 HOH B 24 624 25 HOH HOH . E 4 HOH B 25 625 26 HOH HOH . E 4 HOH B 26 626 27 HOH HOH . E 4 HOH B 27 627 28 HOH HOH . E 4 HOH B 28 628 29 HOH HOH . E 4 HOH B 29 629 30 HOH HOH . E 4 HOH B 30 630 31 HOH HOH . E 4 HOH B 31 631 32 HOH HOH . E 4 HOH B 32 632 33 HOH HOH . E 4 HOH B 33 633 34 HOH HOH . E 4 HOH B 34 634 35 HOH HOH . E 4 HOH B 35 635 36 HOH HOH . E 4 HOH B 36 636 37 HOH HOH . E 4 HOH B 37 637 39 HOH HOH . E 4 HOH B 38 638 40 HOH HOH . E 4 HOH B 39 639 41 HOH HOH . E 4 HOH B 40 640 42 HOH HOH . E 4 HOH B 41 641 43 HOH HOH . E 4 HOH B 42 642 44 HOH HOH . E 4 HOH B 43 643 45 HOH HOH . E 4 HOH B 44 644 46 HOH HOH . E 4 HOH B 45 645 47 HOH HOH . E 4 HOH B 46 646 48 HOH HOH . E 4 HOH B 47 647 49 HOH HOH . E 4 HOH B 48 648 50 HOH HOH . E 4 HOH B 49 649 51 HOH HOH . E 4 HOH B 50 650 52 HOH HOH . E 4 HOH B 51 651 53 HOH HOH . E 4 HOH B 52 652 54 HOH HOH . E 4 HOH B 53 653 55 HOH HOH . E 4 HOH B 54 654 56 HOH HOH . E 4 HOH B 55 655 57 HOH HOH . E 4 HOH B 56 656 58 HOH HOH . E 4 HOH B 57 657 60 HOH HOH . E 4 HOH B 58 658 61 HOH HOH . E 4 HOH B 59 659 62 HOH HOH . E 4 HOH B 60 660 63 HOH HOH . E 4 HOH B 61 661 64 HOH HOH . E 4 HOH B 62 662 65 HOH HOH . E 4 HOH B 63 663 66 HOH HOH . E 4 HOH B 64 664 67 HOH HOH . E 4 HOH B 65 665 68 HOH HOH . E 4 HOH B 66 666 69 HOH HOH . E 4 HOH B 67 667 70 HOH HOH . E 4 HOH B 68 668 71 HOH HOH . E 4 HOH B 69 669 72 HOH HOH . E 4 HOH B 70 670 73 HOH HOH . E 4 HOH B 71 671 74 HOH HOH . E 4 HOH B 72 672 75 HOH HOH . E 4 HOH B 73 673 76 HOH HOH . E 4 HOH B 74 674 77 HOH HOH . E 4 HOH B 75 675 78 HOH HOH . E 4 HOH B 76 676 79 HOH HOH . E 4 HOH B 77 677 80 HOH HOH . E 4 HOH B 78 678 81 HOH HOH . E 4 HOH B 79 679 82 HOH HOH . E 4 HOH B 80 680 83 HOH HOH . E 4 HOH B 81 681 85 HOH HOH . E 4 HOH B 82 682 86 HOH HOH . E 4 HOH B 83 683 87 HOH HOH . E 4 HOH B 84 684 88 HOH HOH . E 4 HOH B 85 685 89 HOH HOH . E 4 HOH B 86 686 90 HOH HOH . E 4 HOH B 87 687 92 HOH HOH . E 4 HOH B 88 688 94 HOH HOH . E 4 HOH B 89 689 95 HOH HOH . E 4 HOH B 90 690 96 HOH HOH . E 4 HOH B 91 691 97 HOH HOH . E 4 HOH B 92 692 98 HOH HOH . E 4 HOH B 93 693 99 HOH HOH . E 4 HOH B 94 694 100 HOH HOH . E 4 HOH B 95 695 101 HOH HOH . E 4 HOH B 96 696 102 HOH HOH . E 4 HOH B 97 697 103 HOH HOH . E 4 HOH B 98 698 104 HOH HOH . E 4 HOH B 99 699 105 HOH HOH . E 4 HOH B 100 700 106 HOH HOH . E 4 HOH B 101 701 108 HOH HOH . E 4 HOH B 102 702 109 HOH HOH . E 4 HOH B 103 703 110 HOH HOH . E 4 HOH B 104 704 111 HOH HOH . E 4 HOH B 105 705 112 HOH HOH . E 4 HOH B 106 706 113 HOH HOH . E 4 HOH B 107 707 114 HOH HOH . E 4 HOH B 108 708 115 HOH HOH . E 4 HOH B 109 709 116 HOH HOH . E 4 HOH B 110 710 117 HOH HOH . E 4 HOH B 111 711 118 HOH HOH . E 4 HOH B 112 712 119 HOH HOH . E 4 HOH B 113 713 120 HOH HOH . E 4 HOH B 114 714 121 HOH HOH . E 4 HOH B 115 715 122 HOH HOH . E 4 HOH B 116 716 123 HOH HOH . E 4 HOH B 117 717 124 HOH HOH . E 4 HOH B 118 718 125 HOH HOH . E 4 HOH B 119 719 126 HOH HOH . E 4 HOH B 120 720 127 HOH HOH . E 4 HOH B 121 721 128 HOH HOH . E 4 HOH B 122 722 129 HOH HOH . E 4 HOH B 123 723 130 HOH HOH . E 4 HOH B 124 724 131 HOH HOH . E 4 HOH B 125 725 132 HOH HOH . E 4 HOH B 126 726 133 HOH HOH . E 4 HOH B 127 727 134 HOH HOH . E 4 HOH B 128 728 135 HOH HOH . E 4 HOH B 129 729 136 HOH HOH . E 4 HOH B 130 730 137 HOH HOH . E 4 HOH B 131 731 138 HOH HOH . E 4 HOH B 132 732 139 HOH HOH . E 4 HOH B 133 733 140 HOH HOH . E 4 HOH B 134 734 141 HOH HOH . E 4 HOH B 135 735 142 HOH HOH . E 4 HOH B 136 736 143 HOH HOH . E 4 HOH B 137 737 144 HOH HOH . E 4 HOH B 138 738 145 HOH HOH . E 4 HOH B 139 739 147 HOH HOH . E 4 HOH B 140 740 148 HOH HOH . E 4 HOH B 141 741 149 HOH HOH . E 4 HOH B 142 742 150 HOH HOH . E 4 HOH B 143 743 151 HOH HOH . E 4 HOH B 144 744 152 HOH HOH . E 4 HOH B 145 745 153 HOH HOH . E 4 HOH B 146 746 154 HOH HOH . E 4 HOH B 147 747 155 HOH HOH . E 4 HOH B 148 748 156 HOH HOH . E 4 HOH B 149 749 157 HOH HOH . E 4 HOH B 150 750 158 HOH HOH . E 4 HOH B 151 751 159 HOH HOH . E 4 HOH B 152 752 160 HOH HOH . E 4 HOH B 153 753 162 HOH HOH . E 4 HOH B 154 754 163 HOH HOH . E 4 HOH B 155 755 164 HOH HOH . E 4 HOH B 156 756 166 HOH HOH . E 4 HOH B 157 757 167 HOH HOH . E 4 HOH B 158 758 168 HOH HOH . E 4 HOH B 159 759 169 HOH HOH . E 4 HOH B 160 760 171 HOH HOH . E 4 HOH B 161 761 173 HOH HOH . E 4 HOH B 162 762 174 HOH HOH . E 4 HOH B 163 763 175 HOH HOH . E 4 HOH B 164 764 176 HOH HOH . E 4 HOH B 165 765 177 HOH HOH . E 4 HOH B 166 766 178 HOH HOH . E 4 HOH B 167 767 179 HOH HOH . E 4 HOH B 168 768 180 HOH HOH . E 4 HOH B 169 769 181 HOH HOH . E 4 HOH B 170 770 183 HOH HOH . E 4 HOH B 171 771 185 HOH HOH . E 4 HOH B 172 772 186 HOH HOH . E 4 HOH B 173 773 187 HOH HOH . E 4 HOH B 174 774 188 HOH HOH . E 4 HOH B 175 775 189 HOH HOH . E 4 HOH B 176 776 190 HOH HOH . E 4 HOH B 177 777 192 HOH HOH . E 4 HOH B 178 778 193 HOH HOH . E 4 HOH B 179 779 194 HOH HOH . E 4 HOH B 180 780 195 HOH HOH . E 4 HOH B 181 781 196 HOH HOH . E 4 HOH B 182 782 197 HOH HOH . E 4 HOH B 183 783 198 HOH HOH . E 4 HOH B 184 784 199 HOH HOH . E 4 HOH B 185 785 201 HOH HOH . E 4 HOH B 186 786 202 HOH HOH . E 4 HOH B 187 787 203 HOH HOH . E 4 HOH B 188 788 204 HOH HOH . E 4 HOH B 189 789 205 HOH HOH . E 4 HOH B 190 790 206 HOH HOH . E 4 HOH B 191 791 207 HOH HOH . E 4 HOH B 192 792 208 HOH HOH . E 4 HOH B 193 793 209 HOH HOH . E 4 HOH B 194 794 211 HOH HOH . E 4 HOH B 195 795 212 HOH HOH . E 4 HOH B 196 796 214 HOH HOH . E 4 HOH B 197 797 215 HOH HOH . E 4 HOH B 198 798 216 HOH HOH . E 4 HOH B 199 799 217 HOH HOH . E 4 HOH B 200 800 218 HOH HOH . E 4 HOH B 201 801 220 HOH HOH . E 4 HOH B 202 802 221 HOH HOH . E 4 HOH B 203 803 222 HOH HOH . E 4 HOH B 204 804 223 HOH HOH . E 4 HOH B 205 805 224 HOH HOH . E 4 HOH B 206 806 226 HOH HOH . E 4 HOH B 207 807 227 HOH HOH . E 4 HOH B 208 808 228 HOH HOH . E 4 HOH B 209 809 229 HOH HOH . E 4 HOH B 210 810 230 HOH HOH . E 4 HOH B 211 811 231 HOH HOH . E 4 HOH B 212 812 232 HOH HOH . E 4 HOH B 213 813 234 HOH HOH . E 4 HOH B 214 814 235 HOH HOH . E 4 HOH B 215 815 237 HOH HOH . E 4 HOH B 216 816 238 HOH HOH . E 4 HOH B 217 817 239 HOH HOH . E 4 HOH B 218 818 240 HOH HOH . E 4 HOH B 219 819 241 HOH HOH . E 4 HOH B 220 820 242 HOH HOH . E 4 HOH B 221 821 243 HOH HOH . E 4 HOH B 222 822 244 HOH HOH . E 4 HOH B 223 823 245 HOH HOH . E 4 HOH B 224 824 246 HOH HOH . E 4 HOH B 225 825 248 HOH HOH . E 4 HOH B 226 826 249 HOH HOH . E 4 HOH B 227 827 250 HOH HOH . E 4 HOH B 228 828 251 HOH HOH . E 4 HOH B 229 829 252 HOH HOH . E 4 HOH B 230 830 253 HOH HOH . E 4 HOH B 231 831 254 HOH HOH . E 4 HOH B 232 832 255 HOH HOH . E 4 HOH B 233 833 256 HOH HOH . E 4 HOH B 234 834 257 HOH HOH . E 4 HOH B 235 835 258 HOH HOH . E 4 HOH B 236 836 259 HOH HOH . E 4 HOH B 237 837 260 HOH HOH . E 4 HOH B 238 838 261 HOH HOH . E 4 HOH B 239 839 262 HOH HOH . E 4 HOH B 240 840 263 HOH HOH . E 4 HOH B 241 841 264 HOH HOH . E 4 HOH B 242 842 265 HOH HOH . E 4 HOH B 243 843 266 HOH HOH . E 4 HOH B 244 844 267 HOH HOH . E 4 HOH B 245 845 268 HOH HOH . E 4 HOH B 246 846 269 HOH HOH . E 4 HOH B 247 847 270 HOH HOH . E 4 HOH B 248 848 271 HOH HOH . E 4 HOH B 249 849 272 HOH HOH . E 4 HOH B 250 850 273 HOH HOH . E 4 HOH B 251 851 274 HOH HOH . E 4 HOH B 252 852 275 HOH HOH . E 4 HOH B 253 853 276 HOH HOH . E 4 HOH B 254 854 277 HOH HOH . E 4 HOH B 255 855 278 HOH HOH . E 4 HOH B 256 856 279 HOH HOH . E 4 HOH B 257 857 281 HOH HOH . E 4 HOH B 258 858 282 HOH HOH . E 4 HOH B 259 859 283 HOH HOH . E 4 HOH B 260 860 284 HOH HOH . E 4 HOH B 261 861 285 HOH HOH . E 4 HOH B 262 862 286 HOH HOH . E 4 HOH B 263 863 287 HOH HOH . E 4 HOH B 264 864 288 HOH HOH . E 4 HOH B 265 865 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -14.686 -45.169 18.417 1 26.86 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . C 3 -13.937 -46.298 18.867 1 27.33 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . C 3 -14.079 -44.647 17.126 1 25.88 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . C 3 -14.817 -43.501 16.686 1 25.06 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . C 3 -12.584 -44.37 17.33 1 24.44 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . C 3 -12.106 -43.222 16.625 1 22.47 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 1100 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #